Path: utzoo!utgpu!watserv1!watmath!uunet!bionet!life!jeh From: jeh@life (Jamie Hayden) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003162318.AA01933@life.LANL.GOV> Date: 16 Mar 90 23:18:40 GMT Sender: daemon@genbank.BIO.NET Lines: 664 LOCUS BO1TR3 205 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage bo1 3'-terminal region rna. ACCESSION J02445 KEYWORDS . SOURCE bo1 rna from e.coli a/lambda. ORGANISM Bacteriophage Bo1 Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 205) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 39 a 58 c 68 g 40 t ORIGIN 1 ttccctcagg agtgttggcc agcgagctct cctcggtagc tgaccgaggt accgtaaacg 61 gggtgggtgt gctcgaaaga gcacgggtcg cgaaagcggt ggctccaccg aaaggtgggc 121 ggcttcggcc cagggacctc cccctgaaga gaggacccgg gattttcccg atttggtaac 181 tagctgcttg gctagttacc accca // LOCUS BZ3TR3 218 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage bz13 3'-terminal region rna. ACCESSION J02446 KEYWORDS . SOURCE bz13 rna from e.coli a/lambda. ORGANISM Bacteriophage Bz13 Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 218) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 48 a 59 c 58 g 53 t ORIGIN 1 tgaaacccta tcttccgcca ggtttaggtg caaacctaac tcggaatgga gaacccagat 61 ccctctattt cctcaggaag tagaggcctg cgttctctcc tgatagtatc aggacctccc 121 cggatggggt gggtgggacc gaaaggttcc tatggaggtg aatcctcccg cccgtgaagg 181 cggtttaatg actagtttgc ttggctagtc accaccca // LOCUS D18AAA 284 bp ss-RNA PHG 01-SEP-1983 DEFINITION bacteriophage d108 gene a 5' end. ACCESSION J02447 KEYWORDS . SOURCE d108 (bacteriophage d108). ORGANISM Bacteriophage D108 Viridae; ds-DNA nonenveloped viruses; Myoviridae. REFERENCE 1 (bases 1 to 284) AUTHORS Toussaint,A., Faelen,M., Desmet,L. and Allet,B. TITLE the products of gene a of the related phages mu and d108 differ in their specificities JOURNAL Mol. Gen. Genet. 190, 70-79 (1983) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description CDS <1 18 reading frame ner CDS 29 >284 reading frame A (284 is 1st base in codon) BASE COUNT 89 a 57 c 73 g 65 t ORIGIN 1 atttggccgt ctcgatacta ggtgcgctat gaaagaatgg tatacagcaa aaagaagaga 61 gttgctcggt ttggcaggtt accaaagcaa gccactaaca ttacacgtaa ggcacaaaga 121 gaaggctggg agtttcaggc aggttgcagg gactaaaggt gtatcatttg aattcaatat 181 caaatcattc cctgtcgcat tacgtgctga aaatctgttg caacaaggga gaattgaaac 241 aagtcagggg tattttgaaa tcgcccgccc cacgctggaa gccc // LOCUS FR1TR3 205 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage fr1 3'-terminal region rna. ACCESSION J02453 KEYWORDS . SOURCE fr1 rna from e.coli a/lambda. ORGANISM Bacteriophage fr1 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 1 to 205) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 40 a 59 c 66 g 40 t ORIGIN 1 ttccctcagg agtgttggcc agcgagctct cctcggtagc tgaccgaggt accgtaaacg 61 gggtgggtgt gctcgaaaga gcacgggtcg cgaaagcggt ggctccaccg aaaggttggc 121 ggcttcggcc cagggacctc cccctaaaga gaggacccgg gattctcccg atttggtaac 181 tagctgcttg gctagttacc accca // LOCUS JP3TR3 220 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage jp34 3'-terminal region rna. ACCESSION J02456 KEYWORDS . SOURCE jp34 rna from e.coli a/lambda. ORGANISM Bacteriophage JP34 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 1 to 220) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 50 a 62 c 57 g 51 t ORIGIN 1 tgagacccta tcctccgcca ggtttaggtg caaacctaac tcggaatgga gaacccagat 61 ccctctattt cctcaggaat tagaggcctg cgttctctcc tgatagtatc aggacctccc 121 cggatggggt gggtgtgacc gaaaggccac tatggaggtg aatcctcccg caccaaaagg 181 cggttatcgg tgactagttt gcttggctag tcaccaccca // LOCUS JP5TR3 205 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage jp501 3'-terminal region rna. ACCESSION J02457 KEYWORDS . SOURCE jp501 rna from e.coli a/lambda. ORGANISM Bacteriophage Jp501 Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 205) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 41 a 58 c 68 g 38 t ORIGIN 1 ttccctcagg agtatgggcc agcgagctct cctcggtagc tgaccgaggg accgtaaacg 61 gggtgggtgt gctcgaaaga gcacgggtcg cgaaagcggt ggctccaccg aaaggtgggc 121 ggcttcggcc cagggacctc cccctaaaga gaggacccgg gattttcccg atttggtaac 181 tagctgcttg gctagttacc accca // LOCUS KU1TR3 220 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage ku1 3'-terminal region rna. ACCESSION J02458 KEYWORDS . SOURCE ku1 rna from e.coli a/lambda. ORGANISM Bacteriophage Ku1 Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 220) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 49 a 56 c 58 g 57 t ORIGIN 1 cgaaactata tcttccgcca ggtttagtgg caaacctaac tcggaatgga gaatacagat 61 ccctctattt cctcaggaag tagaggcctg cgttctctcc tgatagtatc aggacctccc 121 cggatggggt gggtgggacc gaaaggttcc tatggaggtg aaccctcccg cctttattgg 181 cggtttaagg tgactagttt gcttggctag tcaccaccca // LOCUS LAMIMM434 1287 bp ds-DNA PHG 01-DEC-1982 DEFINITION bacteriophage lambda imm434 ecori-g fragment. ACCESSION J02460 KEYWORDS repressor. SOURCE lambda from e.coli. ORGANISM Bacteriophage lambda Viridae; ds-DNA nonenveloped viruses; Siphoviridae. REFERENCE 1 (bases 1 to 1287) AUTHORS Ovchinnikov,Y.A., Guryev,S.O., Krayev,A.S., Monastyrskaya,G.S., Skryabin,K.G., Sverdlov,V.M., Zakharyev,V.M. and Bayev,A.A. TITLE primary structure of an ecori fragment of lambda imm 434 dna containing regions ci-cro of phage 434 and cii-o of phage lambda JOURNAL Gene 6, 235-249 (1979) STANDARD full staff_review REFERENCE 2 (bases 1 to 149) AUTHORS Lauer,G., Pastrana,R., Sherley,J. and Ptashne,M. TITLE construction of overproducers of the bacteriophage 434 repressor and cro proteins JOURNAL J. Mol. Appl. Genet. 1, 139-147 (1981) STANDARD full staff_review REFERENCE 3 (bases 1 to 217) AUTHORS Pirrotta,V. TITLE operators and promoters in the or region of phage 434 JOURNAL Nucleic Acids Res. 6, 1495-1508 (1979) STANDARD full staff_review COMMENT phage lambda imm434 is a hybrid phage in which the immunity region of lambda is replaced by that of closely related phage 434. lambda imm434 contains the ci gene, the cro gene and the two operators and promoters of 434 and therefore responds to the control by the 434 repressor but is insensitive to the lambda repressor. the boundary of 434 is at base position 361. FEATURES from to/span description pept 140 355 cro pept 475 768 cii pept 801 > 1287 o signal 41 46 sd sequence for ci signal 68 81 or3 operator signal 91 104 or2 operator conflict 107 108 ga in [1]; g in [3] signal 113 126 or1 operator signal 131 135 sd sequence for cro signal 458 463 sd sequence for cii signal 791 795 sd sequence for o BASE COUNT 422 a 271 c 288 g 306 t ORIGIN 5' end of the ecori-g fragment, polarity of l strand 1 aattcttttg ctttttaccc tggaagaaat actcataagc cacctctgtt atttaccccc 61 aatcttcaca agaaaaactg tatttgacaa acaagataca ttgtatgaaa atacaagaaa 121 gtttgttgat ggaggcgata tgcaaactct ttctgaacgc ctcaagaaga ggcgaattgc 181 gttaaaaatg acgcaaaccg aactggcaac caaagccggt gttaaacagc aatcaattca 241 actgattgaa gctggagtaa ccaagcgacc gcgcttcttg tttgagattg ctatggcgct 301 taactgtgat ccggtttggt tacagtacgg aactaaacgc ggtaaagccg cttaagacat 361 tcccgctctt acacattcca gccctgaaaa agggcatcaa attaaaccac acctatggtg 421 tatgcattta tttgcataca ttcaatcaat tgttatctaa ggaaatactt acatatggtt 481 cgtgcaaaca aacgcaacga ggctctacga atcgagagtg cgttgcttaa caaaatcgca 541 atgcttggaa ctgagaagac agcggaagct gtgggcgttg ataagtcgca gatcagcagg 601 tggaagaggg actggattcc aaagttctca atgctgcttg ctgttcttga atggggggtc 661 gttgacgacg acatggctcg attggcgcga caagttgctg cgattctcac caataaaaaa 721 cgcccggcgg caaccgagcg ttctgaacaa atccagatgg agttctgagg tcattactgg 781 atctatcaac aggagtcatt atgacaaata cagcaaaaat actcaacttc ggcagaggta 841 actttgccgg acaggagcgt aatgtggcag atctcgatga tggttacgcc agactatcaa 901 atatgctgct tgaggcttat tcgggcgcag atctgaccaa gcgacagttt aaagtgctgc 961 ttgccattct gcgtaaaacc tatgggtgga ataaaccaat ggacagaatc accgattctc 1021 aacttagcga gattacaaag ttacctgtca aacggtgcaa tgaagccaag ttagaactcg 1081 tcagaatgaa tattatcaag cagcaaggcg gcatgtttgg accaaataaa aacatctcag 1141 aatggtgcat ccctcaaaac gagggaaaat cccctaaaac gagggataaa acatccctca 1201 aattggggga ttgctatccc tcaaaacagg gggacacaaa agacactatt acaaaagaaa 1261 aaagaaaaga ttattcgtca gagaatt // LOCUS M13VII 333 bp ss-DNA PHG 06-JAN-1983 DEFINITION bacteriophage m13, gene vii and flanks. ACCESSION J02466 KEYWORDS unidentified reading frame. SOURCE m13 from e.coli. ORGANISM Bacteriophage M13 Viridae; ss-DNA nonenveloped viruses; Inoviridae. REFERENCE 1 (bases 1 to 333) AUTHORS Hulsebos,T. and Schoenmakers,J.G.G. TITLE nucleotide sequence of gene vii and of a hypothetical gene (ix) in bacteriophage m13 JOURNAL Nucleic Acids Res. 5, 4677-4698 (1978) STANDARD simple staff_review COMMENT compared with grantham's data. published 1978. BASE COUNT 65 a 78 c 80 g 110 t ORIGIN 1 tcccttatga ttgaccgtct gcgcctcgtt ccggctaagt aacatggagc aggtcgcgga 61 tttcgacaca atttatcagg cgatgataca aatctccgtt gtactttgtt tcgcgcttgg 121 tataatcgct gggggtcaaa gatgagtgtt ttagtgtatt ctttcgcctc tttcgtttta 181 ggttggtgcc ttcgtagtgg cattacgtat tttacccgtt taatggaaac ttcctcatga 241 aaaagtcttt agtcctcaaa gcctctgtag ccgttgctac cctcgttccg atgctgtctt 301 tcgctgctga gggtgacgat cccgcaaaag cgg // LOCUS MS2TR3 205 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage ms2 3'-terminal region rna. ACCESSION J02468 KEYWORDS . SOURCE ms2 rna from e.coli a/lambda. ORGANISM Bacteriophage MS2 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 1 to 205) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 40 a 59 c 69 g 37 t ORIGIN 1 ttccctcagg agtgtgggcc agcgagctct cctcggtagc tgaccgaggg accgtaaacg 61 gggtgggtgt gctcgaaaga gcacgggtcg cgaaagcggt ggctccaccg aaaggtgggc 121 ggcttcggcc cagggacctc cccctaaaga gaggacccgg gattctcccg atttggtaac 181 tagctgcttg gctagttacc accca // LOCUS P22OR 84 bp ds-DNA PHG 06-JAN-1983 DEFINITION bacteriophage p22, or operator. ACCESSION J02472 KEYWORDS repressor. SOURCE p22 from salmonella. ORGANISM Bacteriophage P22 Viridae; ds-DNA nonenveloped viruses; Podoviridae. REFERENCE 1 (bases 1 to 84) AUTHORS Poteete,A.R. and Roberts,T.M. TITLE construction of plasmids that produce phage p22 repressor JOURNAL Gene 13, 153-161 (1981) STANDARD simple staff_review COMMENT compared with grantham's data. published 1981. BASE COUNT 27 a 10 c 13 g 34 t ORIGIN 1 tgtattcata gttaagtcat cttaaataaa cttgactaaa gattccttta gtagataatt 61 taagtgttct ttaatttcgg agcg // LOCUS P29P6 763 bp ds-DNA PHG 01-MAR-1983 DEFINITION bacteriophage phi29 early gene 6 (for 13.9kd prot.), partial. ACCESSION J02480 KEYWORDS . SOURCE phi29 dna from bacillus subtilis. ORGANISM Bacteriophage phi-29 Viridae; ds-DNA nonenveloped viruses; Podoviridae. REFERENCE 1 (bases 1 to 763) AUTHORS Murray,C.L. and Rabinowitz,J.C. TITLE nucleotide sequences of transcription and translation initiation regions in bacillus phage phi29 early genes JOURNAL J. Biol. Chem. 257, 1053-1062 (1982) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description PRM 162 163 promoter PRM 260 265 promoter PRM 283 288 promoter RBS 327 336 ribosomal binding site RBS 641 648 ribosomal binding site CDS 345 656 13.9 kd protein CDS 659 >763 unknown reading frame BASE COUNT 282 a 120 c 162 g 199 t ORIGIN 1 agcttattca aaatatcttc gtgttcttct ggttttaatg gcatatgttt cacctctttc 61 tataatctat tagtactact taattatacc acgtgaaccc ttgatacata aggatttgtg 121 ggcgttcttg tcgaaaaacg tcaacatttt ataaaaaagt cttgcaaaaa gttatacagg 181 tgtggttaaa tagagaacgt agacaacaac cttttattaa aaccttgtaa aactttgtcg 241 aactttttat agaaaagtgt tgaaaattgt cgaacagggt gatataataa aagagtagaa 301 gagatacaga gtctacaaat ataaatagaa agtgggacga agaaatggca aaaatgatgc 361 agagagaaat cacaaagaca accgtcaacg ttgccaaaat ggtgatggtg gacggagagg 421 ttcaggtaga gcaactacca tctgaaacat ttgtgggtaa tctgacaatg gaacaggctc 481 aatggagaat gaagcgcaaa tataaaggcg aacctgttca agtggtaagc gttgaaccta 541 acacagaggt ttatgagcta cctgtagaaa aattccttga agttgctacc gttcgggtag 601 agaaagacga agatcaagag gaacaaacag aagctccaga agaacaggtt gctgaatgat 661 ggaaacacaa gagaaggttc tagtattagt tggagcgcta ttcataaaca ccttcaatct 721 taattataaa agcattgtcc taacacacga ttcagaacaa gct // LOCUS PFITR3 78 bp ss-DNA PHG 01-MAR-1983 DEFINITION bacteriophage fi 3'-terminal region rna. ACCESSION J02452 KEYWORDS . SOURCE fi rna from e.coli a/lambda. ORGANISM Bacteriophage Fi Viridae; ss-DNA nonenveloped viruses; Inoviridae. REFERENCE 1 (bases 1 to 78) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 18 a 27 c 17 g 16 t ORIGIN 1 ttgagccccg agagagagaa agaaagaaaa ctccctcttt gagaggtggc tctgctttgc 61 cccccccctc tcctccca // LOCUS PGATR3 220 bp ss-DNA PHG 01-MAR-1983 DEFINITION bacteriophage ga 3'-terminal region rna. ACCESSION J02455 KEYWORDS . SOURCE ga rna from e.coli a/lambda. ORGANISM Bacteriophage GA Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 1 to 220) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 49 a 64 c 57 g 50 t ORIGIN 1 tgagacccta tcctccgcca ggtttaggtg caaacctaac tcggaatgga gaacccagat 61 ccctctattt cctcaggaat tagaggcctg cgttctctcc tgatagtatc aggacctccc 121 cggatggggt gggtgtgacc gaaaggccac tatggaggtg aaccctcccg caccaaaagg 181 cggttctcgg tgactagttt gcttggctag tcaccaccca // LOCUS PMUIMM 1592 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage mu immunity region (left end of genome). ACCESSION J02469 KEYWORDS . SOURCE mu from e.coli. ORGANISM Bacteriophage mu Viridae; ds-DNA nonenveloped viruses; Myoviridae. REFERENCE 1 (bases 1 to 1592) AUTHORS Priess,H., Kamp,D., Kahmann,R., Braeuer,B. and Delius,H. TITLE nucleotide sequence of the immunity region of bacteriophage mu JOURNAL Mol. Gen. Genet. 186, 315-321 (1982) STANDARD full staff_review COMMENT this region encodes the ci repressor, the cii or ner function and the beginning of gene a. between bases 863 and 1099 putative promotor sequences for leftward and rightward transcription and operator-like structures were recognized. FEATURES from to/span description pept 863 339 (c) ci protein pept 1099 1326 cii protein (ner) pept 1328 > 1592 gene a (partial) BASE COUNT 468 a 321 c 317 g 486 t ORIGIN left end of the genome 1 tgtattgatt cacttgaagt acgaaaaaaa ccgggaggac attggattat tcgggatctg 61 atgggattag atttggtggg gcttgcaagc ctgtagtgca aattttagtc gttaatcaat 121 gaaacgcgaa agatagtaaa aaattgcttt tgtttcattg aaaatacgaa aaacaaaaac 181 actgcaaatc atttcaataa cagcttcaaa aaacgttcaa aaccgataac aaccaagctg 241 tcaccaaatg actcatatca caaatcagct tatgccgttt aggtatgtta catgtgtgat 301 tatgtgaggt gaagtatgtt ttagctggtt catggttgtt atacggcttt ttttacctcc 361 tgtggttcct gtgaaggtac tacaacactt tcctgttcat gaatcccata ctttgacaaa 421 atctctttgc gtttttcttc aggtaatgca tctagcatca tcaacgtctg aatactttgc 481 tgtgaaaatc ctataaagct gtaaagtttc tgttcattaa atacaagagg cattaacgcc 541 aacaaccccc ctttacttaa aagtttcagt gccttgcgtg cttcatctgg ttccagctct 601 tcaatcatat tgattaaggt tgtggttaat ttgtttatca gttccgaaga atcctgtttc 661 tcattggctt gagcaccagt atccggtgtg gataacccca agtgcgcaat aacttgctct 721 cgttctttgg tgggcatcga catcacatcg tattcaacag ctttcccccc cttgacacct 781 tccttttttt gcttcgtcca gccttgaaca tttgctcgat agtgaacacc agcaacagat 841 ccaggcatac catcagcagc cataatttct tgcggcgaac accaaattga cttttcagta 901 ttattctttt ctataaagtt acttttcaaa atttaaactc cttatttatc aacgcgttaa 961 tcagtaatca aaggaattta ccaaaaagca gctttacatt aagcttttca gtaattatct 1021 ttttagtaag ctagctaagt ttttacactt agttaaattg ctaactttat agattacaaa 1081 acttaggagg gtttttaaat gtgttccaac gaaaaggccc gtgattggca tcgtgcggat 1141 gtgattgcgg gacttaagaa aagaaagctc tctttatcag ctctttcccg gcagtttggt 1201 tatgcgccaa ctacattagc taatgcgcta gaacgacact ggccaaaggg tgagcagatt 1261 attgctaacg ccttagaaac taaaccggaa gtaatctggc ctagccgata tcaagcaggt 1321 gaataacatg gaactttggg tatcaccgaa agagtgtgcg aatcttcctg gtttgccgaa 1381 aacatcggct ggtgtgattt atgttgctaa aaagcaagga tggcaaaacc gcactagagc 1441 aggtgtcaaa ggtggtaaag caattgaata caatgcgaac tctttacctg ttgaagcgaa 1501 agcggcgtta ttgctgagac aaggagagat tgaaacaagc ctggggtatt ttgaaatcgc 1561 ccgccccacg ctggaagccc atgattatga tc // LOCUS PQBTR3 246 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage qbetatr3 3'-terminal region rna. ACCESSION J02485 KEYWORDS . SOURCE qbetatr3 rna from e.coli a/lambda. ORGANISM Bacteriophage Q-beta Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 1 to 246) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 59 a 64 c 60 g 63 t ORIGIN 1 ccatcgatca gcttatctgt aggagtaatc ctaccaagat aagcaggtct accggcaaat 61 tcgatataca gtatatcgcc tgcagtagcc gtgttctggc acctacgggg tcttccaggg 121 cacgaaggtt gcgtctctac acgaggcgta acctgggacg cggcattatg gcgcctaatt 181 gtgaataaat tatcacaatt actcttacga gtgagagggg gatctgcttt gccctctctc 241 ctccca // LOCUS PSPTR3 266 bp ds-DNA PHG 01-MAR-1983 DEFINITION bacteriophage sp 3'-terminal region rna. ACCESSION J02500 KEYWORDS . SOURCE sp rna from e.coli a/lambda. ORGANISM Bacteriophage Sp Viridae; ds-DNA nonenveloped viruses; Myoviridae. REFERENCE 1 (bases 1 to 266) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 56 a 76 c 76 g 58 t ORIGIN 1 cgcgtgacgc agataggact tgttttgatg aagcgccgct agctactagc cttcgtcgca 61 agacaggtcg gtacaaagtg gcctggattc aggacagtgc ttcatccggc ccccgtattt 121 tattacggga attcccgagg tgaagcttgc aagctaggca cctagcttgt gatgggaagg 181 gtcggtctct gaccgcccga gaggagaaag aaagaaaacc tcccccctcc gcgagggtgg 241 gctctgcttt gccccctctc ctccca // LOCUS PSTTR3 246 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage st 3'-terminal region rna. ACCESSION J02502 KEYWORDS . SOURCE st rna from e.coli a/lambda. ORGANISM Bacteriophage ST Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 246) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 58 a 64 c 61 g 63 t ORIGIN 1 ccatcgatca gcttatctgt aggagtaatc ctaccaagat aagcaggtct accggcaaat 61 tcgatgtaca gtatatcgcc tgcagtagcc gtgttctggc acctacgggg tcttccaggg 121 cacgaaggtt gcgtctctac acgaggcgta acctgggacg cggcattatg gcgcctaatt 181 gtgaataaat tatcacaatt actcttacga gtgagagggg gatctgcttt gccctctctc 241 ctccca // LOCUS PVKTR3 246 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage vk 3'-terminal region rna. ACCESSION J02522 KEYWORDS . SOURCE vk rna from e.coli a/lambda. ORGANISM Bacteriophage VK Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 246) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 61 a 58 c 59 g 68 t ORIGIN 1 ctatcgatca gcttatttgt aagagtaatc ctacaaaaat aagcagatct actggtaagt 61 tcgatataca gtatatcgcc tgcagtagcc gtgttctggc acctacgggg ttttccaggg 121 cacgaaggtt gcgtctctac acgaggcgta acctgggagg cgctattatg gcgcctggtt 181 gtgaataaat tatcacaact actcttacga gtgagagagg gatctgcttt gccctctctc 241 ctccca // LOCUS PX1DE 521 bp ss-DNA PHG 01-MAR-1983 DEFINITION bacteriophage phix174 d and e genes. ACCESSION J02483 KEYWORDS . SOURCE phix174. ORGANISM Bacteriophage phi-X174 Viridae; ss-DNA nonenveloped viruses; Microviridae. REFERENCE 1 (bases 1 to 521) AUTHORS Barrell,B.G., Air,G.M. and Hutchison,C.A.III. TITLE overlapping genes in bacteriophage phix174 JOURNAL Nature 264, 34-41 (1976) STANDARD simple staff_review BASE COUNT 125 a 115 c 124 g 157 t ORIGIN 1 gagtccgatg ctgttcaacc actaataggt aagaaatcat gagtcaagtt actgaacaat 61 ccgtacgttt ccagaccgct ttggcctcta ttaagctcat tcaggcttct gccgttttgg 121 atttaaccga agatgatttc gattttctga cgagtaacaa agtttggatt gctactgacc 181 gctctcgtgc tcgtcgctgc gttgaggctt gcgtttatgg tacgctggac tttgtgggat 241 accctcgctt tcctgctcct gttgagttta ttgctgccgt cattgcttat tatgttcatc 301 ccgtcaacat tcaaacggcc tgtctcatca tggaaggcgc tgaatttacg gaaaacatta 361 ttaatggcgt cgagcgtccg gttaaagccg ctgaattgtt cgcgtttacc ttgcgtgtac 421 gcgcaggaaa cactgacgtt cttactgacg cagaagaaaa cgtgcgtcaa aaattacgtg 481 cggaaggagt gatgtaatgt ctaaaggtaa aaaacgttct g // LOCUS R17APROT 33 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage r17 a protein initiation site. ACCESSION J02486 KEYWORDS . SOURCE r17 rna. ORGANISM Bacteriophage R17 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 1 to 33) AUTHORS Steitz,J.A. TITLE polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage r17 rna JOURNAL Nature 224, 957-964 (1969) STANDARD full staff_review COMMENT [1] also shows coat protein (see r17coatp) and rna synthetase (see r17rnasyn) initiation sites. FEATURES from to/span description pept 18 > 33 a (partial) BASE COUNT 6 a 6 c 10 g 11 t ORIGIN t-1 and pancreatic ribonuclease cleavage site 1 cctaggaggt ttgacctatg cgagctttta gtg // LOCUS R17COATP 38 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage r17 coat protein initiation site. ACCESSION J02487 KEYWORDS coat protein. SOURCE r17 rna. ORGANISM Bacteriophage R17 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 1 to 38) AUTHORS Steitz,J.A. TITLE polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage r17 rna JOURNAL Nature 224, 957-964 (1969) STANDARD full staff_review COMMENT [1] also shows rna synthetase (see r17rnasyn) and a protein (see r17aprot) initiation sites. FEATURES from to/span description pept 24 > 38 coat protein (amino end) BASE COUNT 9 a 8 c 10 g 11 t ORIGIN pancreatic ribonuclease cleavage site 1 agagcctaac cggggtttga agcatggctt ctaacttt // LOCUS R17RNASYN 72 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage r17 rna synthetase initiation site. ACCESSION J02488 KEYWORDS RNA synthetase; synthetase. SOURCE r17. ORGANISM Bacteriophage R17 Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Leviviridae. REFERENCE 1 (bases 38 to 72) AUTHORS Steitz,J.A. TITLE polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage r17 rna JOURNAL Nature 224, 957-964 (1969) STANDARD full staff_review REFERENCE 2 (bases 1 to 60) AUTHORS Bernardi,A. and Spahr,P.-F. TITLE nucleotide sequence at the binding site for coat protein on rna of bacteriophage r17 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 69, 3033-3037 (1972) STANDARD full staff_review REFERENCE 3 (bases 2 to 60) AUTHORS Gralla,J., Steitz,J.A. and Crothers,D.M. TITLE direct physical evidence for secondary structure in an isolated fragment of r17 bacteriophage mrna JOURNAL Nature 248, 204-208 (1974) STANDARD full staff_review COMMENT [2] presents evidence that the coat protein binding to the initiation site of the rna synthetase cistron directly prevents ribosomes from translating that cistron. [2] also shows that when the complex is formed in vitro and then incubated with t1rnase, a 59 bp rna fragment is protected from nucleolytic degradation (bases 2 through 60). [3] demonstrates that the region of r17 rna protected from rnase digestion by coat protein assumes a stable, predictable secondary structure. [3] shows coat protein (see r17coatp) and a protein (see r17aprot) initiation sites. FEATURES from to/span description pept < 1 21 coat protein (carboxyl end) pept 55 > 72 synthetase (partial) unsure 1 1 [2] uncertainty conflict 12 12 c in [2]; t in [3] BASE COUNT 26 a 19 c 14 g 13 t ORIGIN unreported 1 gcaaactccg gcatctacta atagatgccg gccattcaaa catgaggatt acccatgtcg 61 aagacaacaa ag // LOCUS TH1TR3 220 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage th1 3'-terminal region rna. ACCESSION J02519 KEYWORDS . SOURCE th1 rna from e.coli a/lambda. ORGANISM Bacteriophage TH1 Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 220) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 49 a 62 c 56 g 53 t ORIGIN 1 tgagacccta tcttccgcca ggtttaggtg caaacctaac tcggaatgga gaactcagat 61 ccctctattt cctcaggaac tagaggcctg cgttctctcc tgatagtatc aggacctccc 121 cggatggggt gggtgtgacc gtaaggccac tatggaggtg aatcctccac gcccaaaagg 181 cagttctcgg tgactagttt gcttggctag tcaccaccca // LOCUS TW1TR3 76 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage tw19 3'-terminal region rna. ACCESSION J02520 KEYWORDS . SOURCE tw19 rna from e.coli a/lambda. ORGANISM Bacteriophage TW19 Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 76) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 16 a 24 c 20 g 16 t ORIGIN 1 atttgggccc cggaaggaga aagaaagaaa actccctcct gtgagggtgg gctctgcttt 61 gccccctctc ctccca // LOCUS TW2TR3 260 bp ss-RNA PHG 01-MAR-1983 DEFINITION bacteriophage tw28 3'-terminal region rna. ACCESSION J02521 KEYWORDS . SOURCE tw28 rna from e.coli a/lambda. ORGANISM Bacteriophage TW28 Viridae; Nonclassified viruses. REFERENCE 1 (bases 1 to 260) AUTHORS Inokuchi,Y., Hirashima,A. and Watanabe,I. TITLE comparison of the nucleotide sequences at the 3'-terminal region of rnas from rna coliphages JOURNAL J. Mol. Biol. 158, 711-730 (1982) STANDARD simple staff_review BASE COUNT 56 a 69 c 77 g 58 t ORIGIN 1 cgcgtgtcgc agatgggact gggtttgatg aagcgccgct agctactagc cttcgtcgca 61 agacaggtcg gtacaaagtg gcctggattc aggacagtgc cttcatccgg cccccgtatt 121 ttattacggg acttcccgag gtgaagcttg caagctagac actagcttgt gatgggaagg 181 ggtccatttg agccccggaa ggagaaagaa agaaaactcc tcctgcgagg gtgggctctg 241 ctttgcccac tctcctccca //