Path: utzoo!attcan!uunet!snorkelwacker!apple!bionet!life!mia From: mia@life (Mia McLeod) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003192359.AA00308@life.LANL.GOV> Date: 19 Mar 90 23:59:21 GMT Sender: daemon@genbank.BIO.NET Lines: 577 Approved: lear@genbank.bio.net LOCUS COBHEMA 1307 bp ss-mRNA VRL 03-JAN-1990 DEFINITION Bovine coronavirus hemagglutinin-esterase mRNA, complete cds. ACCESSION M31052 KEYWORDS hemagglutinin-esterase. SOURCE Bovine coronavirus (strain Mebus), cDNA to viral RNA. ORGANISM Bovine coronavirus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Coronaviridae. REFERENCE 1 (bases 1 to 1307) AUTHORS Kienzle,T.E., Abraham,S., Hogue,B.G. and Brian,D.A. TITLE Structure and orientation of expressed bovine coronavirus hemagglutinin-esterase protein JOURNAL Unpublished (1990) University of Tennessee, Dept. of Microbiology, Knoxville, TN 37996-0845 STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by D.A.Brian, 02-JAN-1990. FEATURES from to/span description pept 16 1290 hemagglutinin-esterase precursor sigp 16 69 hemagglutinin-esterase signal peptide matp 70 1287 hemagglutinin-esterase ORF 107 517 ORF 1 ORF 977 1228 ORF 2 BASE COUNT 331 a 220 c 250 g 506 t ORIGIN 1 ctaaactcag tgaaaatgtt tttgcttctt agatttgttc tagttagctg cataattggt 61 agcctaggtt ttgataaccc tcctaccaat gttgtttcgc atttaaatgg agattggttt 121 ttatttggtg acagtcgttc agattgtaat catgttgtta ataccaaccc ccgtaattat 181 tcttatatgg accttaatcc tgccctgtgt gattctggta aaatatcatc taaagctggc 241 aactccattt ttaggagttt tcactttacc gatttttata attacacagg cgaaggtcaa 301 caaattattt tttatgaggg tgttaatttt acgccttatc atgcctttaa atgcaccact 361 tctggtagta atgatatttg gatgcagaat aaaggcttgt tttacactca ggtttataag 421 aatatggctg tgtatcgcag ccttactttt gttaatgtac catatgttta taatggctct 481 gcacaatcta cagctctttg taaatctggt agtttagttc ttaataaccc tgcatatata 541 gctcgtgaag ctaattttgg ggattattat tataaggttg aagctgactt ttatttgtca 601 ggttgtgacg agtatatcgt accactttgt atttttaacg gcaagttttt gtcgaataca 661 aagtattatg atgatagtca atattatttt aataaagaca ctggtgttat ttatggtctc 721 aattctactg aaaccattac cactggtttt gattttaatt gtcattattt agttttaccc 781 tctggtaatt atttagccat ttcaaatgag ctattgttaa ctgttcctac gaaagcaatc 841 tgtcttaaca agcgtaagga ttttacgcct gtacaggttg ttgattcacg gtggaacaat 901 gccaggcagt ctgataacat gacggcggtt gcttgtcaac ccccgtactg ttattttcgt 961 aattctacta ccaactatgt tggtgtttat gatatcaatc atggggatgc tggttttact 1021 agcatactca gtggtttgtt atatgattca ccttgttttt cgcagcaagg tgtttttagg 1081 tatgataatg ttagcagtgt ctggcctctc tattcctatg gcagatgccc tactgctgct 1141 gatattaata cccctgatgt acctatttgt gtgtatgatc cgctaccact tattttgctt 1201 ggcatccttt tgggtgttgc ggtcataatt attgtagttt tgttgttata ttttatggtg 1261 gataatggta ctaggctgca tgatgcttag accataatct aaacatg // LOCUS COBSPIKA 4109 bp ss-RNA VRL 03-JAN-1990 DEFINITION Bovine coronavirus spike protein mRNA, complete cds,4.9 kDa protein mRNA, 5' end and hemagglutinin-esterase, 3' end. ACCESSION M31053 KEYWORDS hemagglutinin-esterase; spike protein. SOURCE Bovine coronavirus (strain Mebus), cDNA to viral RNA. ORGANISM Bovine coronavirus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Coronaviridae. REFERENCE 1 (bases 1 to 4109) AUTHORS Abraham,S., Kienzle,T.E., Lapps,W. and Brian,D.A. TITLE Deduced amino acid sequence of bovine coronavirus spike protein and identification of the internal proteolytic cleavage site JOURNAL Unpublished (1990) Univ. of Tennessee, Knoxville, TN 37996-0845 STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by D.A.Brian, 02-JAN-1990. FEATURES from to/span description pept < 1 3 hemagglutinin-esterase pept 18 4109 spike protein precursor sigp 18 68 spike protein signal peptide matp 69 4106 spike protein ORF 4099 > 4109 4.9 kDA open reading frame site 12 17 transcriptional start consensus spike protein site 3776 3781 transcriptional start consensus 4.9 kDa protein BASE COUNT 1150 a 656 c 806 g 1497 t ORIGIN 1 tagaccataa tctaaacatg tttttgatac ttttaatttc cttaccaatg gcttttgctg 61 ttataggaga tttaaagtgt actacggttt ccattaatga tgttgacacc ggtgctcctt 121 ctattagcac tgatattgtc gatgttacta atggtttagg tacttattat gttttagatc 181 gtgtgtattt aaatactacg ttgttgctta atggttacta ccctacttca ggttctacat 241 atcgtaatat ggcactgaag ggaactttac tattgagcag actatggttt aaaccacctt 301 ttctttctga ttttattaat ggtatttttg ctaaggtcaa aaataccaag gttattaaaa 361 agggtgtaat gtatagtgag tttcctgcta taactatagg tagtactttt gtaaatacat 421 cctatagtgt ggtagtacaa ccacatacta ccaatttgga taataaatta caaggtctct 481 tagagatctc tgtttgccag tatactatgt gcgagtaccc acatacgatt tgtcatccta 541 atctgggtaa taaacgcgta gaactatggc attgggatac aggtgttgtt tcctgtttat 601 ataagcgtaa tttcacatat gatgtgaatg ctgattactt gtatttccat ttttatcaag 661 aaggtggtac tttttatgca tattttacag acactggtgt tgttactaag tttctgttta 721 atgtttattt aggcacggtg ctttcacatt attatgtcct gcctttgact tgttctagtg 781 ctatgacttt agaatattgg gttacacctc tcacttctaa acaatattta ctagctttca 841 atcaagatgg tgttattttt aatgctgttg attgtaagag tgattttatg agtgagatta 901 agtgtaaaac actatctata gcaccatcta ctggtgttta tgaattaaac ggttacactg 961 ttcagccaat tgcagatgtt taccgacgta tacctaatct tcccgattgt aatatagagg 1021 cttggcttaa tgataagtcg gtgccctctc cattaaattg ggaacgtaag accttttcaa 1081 attgtaattt taatatgagc agcctgatgt cttttattca ggcagactca tttacttgta 1141 ataatattga tgctgctaag atatatggta tgtgtttttc cagcataact atagataagt 1201 ttgctatacc caatggtagg aaggttgacc tacaattggg caatttgggc tatttgcagt 1261 cttttaacta tagaattgat actactgcta caagttgtca gttgtattat aatttacctg 1321 ctgctaatgt ttctgttagc aggtttaatc cttctacttg gaataggaga tttggtttta 1381 cagaacaatt tgtttttaag cctcaacctg taggtgtttt tactcatcat gatgttgttt 1441 atgcacaaca ttgttttaaa gctccctcaa atttctgtcc gtgtaaattg gatgggtctt 1501 tgtgtgtagg taatggtcct ggtatagatg ctggttataa aaatagtggt ataggcactt 1561 gtcctgcagg tactaattat ttaacttgcc ataatgctgc ccaatgtaat tgtttgtgca 1621 ctcccgaccc cattacatct aaatctacag ggccttacaa gtgcccccaa actaaatact 1681 tagttggcat aggtgagcac tgttcgggtc ttgctattaa aagtgattat tgtggaggta 1741 atccttgtac ttgccaacca caagcatttt tgggctggtc tgttgactct tgtttacaag 1801 gggataggtg taatattttt gctaatttta ttttgcatga tgttaatagt ggtactactt 1861 gttctactga tttacaaaaa tcaaacacag acataattct tggtgtttgt gttaattatg 1921 atctttatgg tattacaggc caaggtattt ttgttgaggt taatgcgact tattataata 1981 gttggcagaa ccttttatat gattctaatg gtaatctcta tggttttaga gactacttaa 2041 caaacagaac ttttatgatt cgtagttgct atagcggtcg tgtttcagcg gcctttcatg 2101 ctaactcttc cgaaccagca ttgctatttc ggaatattaa atgcaattac gtttttaata 2161 atactctttc acgacagctg caacctatta actattttga tagttatctt ggttgtgttg 2221 tcaatgctga taatagtact tctagtgttg ttcaaacatg tgatctcaca gtaggtagtg 2281 gttactgtgt ggattactct acaaaaagac gaagtcgtag agcgattacc actggttatc 2341 ggtttactac ttttgagcca tttactgtta attcagtaaa tgatagttta gaacctgtag 2401 gtggtttgta tgaaattcaa ataccttcag agtttactat aggtaatatg gaggagttta 2461 ttcaaacaag ctctcctaaa gttactattg attgttctgc ttttgtctgt ggtgattatg 2521 cagcatgtaa atcacagttg gttgaatatg gtagcttctg tgacaatatt aatgctatac 2581 tcacagaagt aaatgaacta cttgacacta cacagttgca agtagctaat agtttaatga 2641 atggtgtcac tcttagcact aagcttaaag atggcgttaa tttcaatgta gacgacatca 2701 atttttcccc tgtattaggt tgtttaggaa gcgattgtaa taaagtttcc agcagatctg 2761 ctatagagga tttacttttt tctaaagtaa agttatctga tgtcggtttc gttgaggctt 2821 ataataattg tactggaggt gccgaaatta gggacctcat ttgtgtgcaa agttataatg 2881 gtatcaaagt gttgcctcca ctgctctcag taaatcagat cagtggatac actttggctg 2941 ccacctctgc tagtctgttt cctcctttgt cagcagcagt aggtgtacca ttttatttaa 3001 atgttcagta tcgtattaat gggattggtg ttaccatgga tgtgttaagt caaaatcaaa 3061 agcttattgc taatgcattt aacaatgctc ttgatgctat tcaggaaggg tttgatgcta 3121 ccaattctgc tttagttaaa attcaagctg ttgttaatgc aaatgctgaa gctcttaata 3181 acttattgca acaactctct aatagatttg gtgctataag ttcttcttta caagaaattc 3241 tatctagact ggatgctctt gaagcgcaag ctcagataga cagacttatt aatgggcgtc 3301 ttaccgctct taatgtttat gtttctcaac agcttagtga ttctacacta gtaaaattta 3361 gtgcagcaca agctatggag aaggttaatg aatgtgtcaa aagccaatca tctaggataa 3421 atttttgtgg taatggtaat catattatat cattagtgca gaatgctcca tatggtttgt 3481 attttatcca ctttagctat gtccctacta agtatgtcac tgcgaaggtt agtcccggtc 3541 tgtgcattgc tggtgataga ggtatagccc ctaagagtgg ttattttgtt aatgtaaata 3601 atacttggat gttcactggt agtggttatt actaccctga acccataact ggaaataatg 3661 ttgttgttat gagtacctgt gctgttaact atactaaagc gccggatgta atgctgaaca 3721 tttcaacacc caacctccat gattttaagg aagagttgga tcaatggttt aaaaaccaaa 3781 catcagtggc accagatttg tcacttgatt atataaatgt tacattcttg gacctacaag 3841 atgaaatgaa taggttacag gaggcaataa aagttttaaa tcagagctac atcaatctca 3901 aggacattgg tacatatgag tattatgtaa aatggccttg gtatgtatgg cttttaattg 3961 gctttgctgg tgtagctatg cttgttttac tattcttcat atgctgttgt acaggatgtg 4021 ggactagttg ttttaagata tgtggtggtt gttgtgatga ttatactgga caccaggagt 4081 tagtaattaa aacatcacat gacgactaa // LOCUS COBSPIKB 1299 bp ss-RNA VRL 03-JAN-1990 DEFINITION Bovine coronavirus 4.9, 4.8, 12.7 and 9.5 kD nonstructural, and integral membrane protein, (5' end), and spike protein (3' end) mRNAs. ACCESSION M31054 KEYWORDS integral membrane protein; spike protein: nonstructural protein. SOURCE Bovine coronavirus (strain Mebus), cDNA to viral RNA. ORGANISM Bovine coronavirus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Coronaviridae. REFERENCE 1 (bases 1 to 1299) AUTHORS Abraham,S., Kienzle,T.E., Lapps,W. and Brian,D.A. TITLE Sequence and expression analysis of potential nonstructural proteins of 4.9, 4.8, 12.7 and 9.5 kilodaltons encoded between the spike and integral membrane protein genes of the bovine coronavirus JOURNAL Unpublished (1990) Univ. of Tennessee, Knoxville, TN 37996-0845 STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by D.A.Brian, 02-JAN-1990. FEATURES from to/span description pept < 1 334 spike protein pept 324 455 nonstructural 4.9 kDa protein (put.) pept 491 628 nonstructural 4.8 kDa protein (put.) pept 712 1041 nonstructural 12.7 kDa protein (put.) pept 1028 1282 nonstructural 9.7 kDa protein (put.) pept 1297 > 1299 integral membrane protein site 1 6 transcription start consensus 4.9 and 4.8 kD proteins site 631 636 transcription start consensus 12.7 kD protein site 899 904 transcription start consensus 9.5 kD protein BASE COUNT 371 a 202 c 257 g 469 t ORIGIN 1 ccaaacatca gtggcaccag atttgtcact tgattatata aatgttacat tcttggacct 61 acaagatgaa atgaataggt tacaggaggc aataaaagtt ttaaatcaga gctacatcaa 121 tctcaaggac attggtacat atgagtatta tgtaaaatgg ccttggtatg tatggctttt 181 aattggcttt gctggtgtag ctatgcttgt tttactattc ttcatatgct gttgtacagg 241 atgtgggact agttgtttta agatatgtgg tggttgttgt gatgattata ctggacacca 301 ggagttagta attaaaacat cacatgacga ctaagttcgt ctttgattta ttggctcctg 361 acgatatatt acatcccttc aatcatgtga agctaattat aagacccatt gaggtcgagc 421 atattataat agctaccaca atgcctgctg tttagtgggt actgtgtctt atataactag 481 taaacctgta atgccaatgg ctacaaccat tgacggtaca gattatacta atattatgcc 541 tagtactgtt tctacaacag tttatttagg ctgttctata ggtattgaca ctagcaccac 601 tggttttacc tgtttttcac ggtactagtt ccaaaccata ttataattta ggtagacctt 661 ataactttaa gcattattaa ttgccaaagt ttctaaggtc acgccctagt aatggacatc 721 tggagacctg agattaaata tctccgttat actaacggtt ttaatgtctc agaattagaa 781 gatgcttgtt ttaaatttaa ctataaattt cctaaagtag gatattgtag agttcctagt 841 catgcttggt gccgtaatca aggtagcttt tgtgctacac tcactcttta tggcaaatcc 901 aaacattatg ataaatattt tggagtaata actggtttta cagcattcgc taatactgta 961 gaggaggctg ttaacaaact ggttttctta gctgttgact ttattacttg gcggagacag 1021 gagttaaatg tttatggctg atgcttattt tgcagacact gtgtggtatg tggggcaaat 1081 aatttttata gttgccattt gtttattggt tataatagtt gtagtggcat ttttggcaac 1141 ttttaaattg tgtattcaac tttgcggtat gtgtaatacc ttaggactgt ccccttctat 1201 ttatgtgttt aatagaggta ggcagtttta tgagttttac aacgatgtaa aaccaccagt 1261 tcttgatgtg gatgacgttt agttaatcca aacattatg // LOCUS ECOCLPAA 3380 bp ds-DNA BCT 03-JAN-1990 DEFINITION E.coli ATP-dependent C1p protease (clpA) gene, complete cds. ACCESSION M31045 KEYWORDS C1p protease; clpA gene. SOURCE E.coli (strain K12) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 3380) AUTHORS Gottesman,S., Clark,W.P. and Maurizi,M.R. TITLE The ATP-dependent Clp protease of Escherichia coli sequence of ClpA and identification of a Clp-specific substrate JOURNAL J. Biol. Chem. (1990) In press STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by S.Gottesman, 03-JAN-1990. FEATURES from to/span description pept 1000 3276 ClpA protein signal 779 784 -35 region signal 805 810 -10 region binding 990 994 ribosome binding site binding 214 221 ATP binding site binding 495 502 ATP binding site BASE COUNT 877 a 759 c 943 g 801 t ORIGIN 1 bp upstream of BamHI site; 19 min. on K12 map. 1 ggatccagta gatgctctgg cacgagagta atttttgaga taaaaatcga gccgatcggg 61 cggcattttg cctttaggat gtacacaatg agacagaaga gctatgcgac tgccgcttct 121 acttcgacgg gcacaataac actggcgtga ttgccttttg gcccctggtg gacatcaaac 181 tgaacggatt gtccagcttt tagcgttctg taaccatcca tctgaatggt ggaataatga 241 gcgaaaatat cttcgccgcc gccttcaggg cagatgaaac caaacccttt ggcattgttg 301 aaccacttaa cagtaccctt ttccatgctt cgacatcctt cgcaaatctt atacaagtaa 361 gatggaataa accggggtca gagagggggc tgttcaaaac ctcgccaact ctagaaatac 421 aatttagaga attagggcga gccgtcaagc atttgacagg ggacaagggg caggtatgaa 481 tcaaaaattt gaagcagtta acgctattga caggaatgtg acagatgtcg ctgatgccaa 541 cgatagatga tagttatcta tcatgtggag tagattggtc aggcaaataa gctcttgtca 601 gcggcagggc gttctgccga taaccgtaac cgaagatgat aactgacaat gggtaaaacg 661 aacgactggc tggactttga tcaactggcg gaagaaaaag ttcgcgacgc gctaaaaccg 721 ccatctatgt ataaagtgat attagtcaat gatgattaca ctccgatgga gtttgttatt 781 gacgtgttac aaaaattctt ttcttatgat gtagaacgtg caacgcaatt gatgctcgct 841 gttcactacc aggggaaggc catttgcgga gtctttaccg ccgaggttgc agaaaccaaa 901 gtggcgatgg tgaacaagta cgcgagggag aatgagcatc cattgctgtg tacgctagaa 961 aaagcctgaa tgcaggcata aaaattgggg gaggtgccta tgctcaatca agaactggaa 1021 ctcagtttaa atatggcttt cgccagagcg cgcgagcacc gtcatgagtt tatgaccgtc 1081 gagcacttgt tactggcgct gctcagtaac ccatctgccc gggaggcgct ggaagcgtgt 1141 tctgtggatt tggttgcgct ccgtcaggaa ctggaagcct ttattgaaca aaccacaccc 1201 gttctgcctg ccagtgaaga ggagcgcgac acacagccga cgctgagttt tcagcgtgta 1261 ctgcaacgtg cggtcttcca tgtccagtcc tccggtcgca atgaggttac cggtgcaaac 1321 gttctggtcg ctatctttag cgaacaggag tcgcaggcgg catatctgtt gcgtaaacac 1381 gaagtcagcc gtctcgatgt ggtgaacttt atctctcatg gcacgcgtaa agacgagccg 1441 acacagtctt ctgatcctgg cagccagcca aacagcgaag aacaagctgg tggggaggaa 1501 cgtatggaga atttcacgac gaacctgaat cagcttgcgc gcgtgggcgg aatcgaccca 1561 ctgattggtc gtgagaagga gctggagcgt gctattcagg ttctctgccg tcgccgtaaa 1621 aacaacccgc tgctggtggg ggaatctggt gtcggtaaaa ccgcgattgc ggaaggtctt 1681 gcctggcgaa ttgttcaggg cgatgtgccg gaagtgatgg ctgactgtac gatttactct 1741 ctcgatatcg gttctctgtt agcgggcaca aaatatcgcg gcgactttga aaaacgtttt 1801 aaagcgttgc tcaagcagct ggagcaggac actaacagca tcctgtttat tgatgagatc 1861 cacaccatta tcggtgcggg tgcagcgtct ggtggtcagg tcgatgcggc taacctaatc 1921 aaaccgttgc tctccagcgg taaaattcgt gtaattggtt cgacaaccta tcaggagttc 1981 agcaacattt tcgagaaaga ccgtgctctg gcgcgtcgct tccagaaaat tgatattact 2041 gaaccgtcga tcgaagaaac tgttcaaatc atcaatggcc tgaaaccgaa gtatgaaggc 2101 caccacgacg tgcgttatac cgcaaaagcg gtgcgtgcgg cggtagagct ggcggtgaaa 2161 tacattaacg atcgtcatct gccggataaa gccattgatg ttatcgacga agcgggcgct 2221 cgcgcacgcg tgatgccggt aagcaaacgc aagaaaaccg ttaatgtggc ggatattgag 2281 tccgtggtgg cccgtattgc acgcattcca gagaagagtg tttctcagag tgatcgtgat 2341 accctgaaaa acctcggcga tcgcttgaaa atgctggtct tcggtcagga taaagccatt 2401 gaggcgctga ctgaagccat taagatggcg cgtgcaggtt taggtcacga acataaaccg 2461 gttggttcgt tcctgtttgc cggccctacc ggggtcggga aaacagaggt gacggtacag 2521 ctttcgaaag ctttgggcat tgagcttctg cgctttgata tgtccgagta tatggaacgc 2581 cataccgtca gccgtgttat tggtgcgcct ccgggatacg ttggttttga tcagggcggt 2641 ttgctgactg atgcggtcat caagcatcca catgcggtgc tgctgctgga cgaaatcgag 2701 aaagcgcacc cggacgtgtt caatattctg ttgcaggtga tggataacgg tacgctgacc 2761 gataacaacg gacgcaaagc agacttccgt aacgtggtgc tggtgatgac caccaacgcc 2821 ggggtacggg aaactgagcg caaatccatt ggtcttatcc accaggataa cagcaccgat 2881 gcgatggaag agatcaagaa gatctttaca ccggaattcc gtaaccgtct cgacaacatt 2941 atctggtttg atcatctgtc aaccgacgtg atccatcagg tggtggataa attcatcgtc 3001 gagttgcagg ttcagctgga tcagaaaggt gtttctctgg aagtgagcca ggaagcgcgt 3061 aactggctgg ccgagaaagg ttacgaccgg gcaatgggcg ctcgtccgat ggcgcgtgtc 3121 atccaggaca acctgaaaaa accgctcgcc aacgaactgc tgtttggttc gctggtggac 3181 ggcggtcagg tcaccgtcgc gctggataaa gagaaaaatg agctgactta cggattccag 3241 agtgcacaaa agcacaaggc ggaagcagcg cattaatctg attgttaggt aggttggtca 3301 agtccgtaat ctcgaaagag gttacggact ttttgtttat ggggtggagg agttcagacc 3361 ctttttttat gatgatggta // LOCUS HUMCINHA 5003 bp ds-DNA PRI 20-DEC-1989 DEFINITION Human C1 inhibitor gene, exons 3 and 4. ACCESSION M30688 KEYWORDS Alu repeat; C1 inhibitor. SOURCE Human DNA, clone 6d. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 5003) AUTHORS Stoppa-Lyonnet,D., Carter,P.E., Meo,T. and Tosi,M. TITLE Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus to deleterious rearrangements JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1989) In press STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by M.Tosi, 13-DEC-1989. FEATURES from to/span description pept / 1 + 334 C1 inhibitor, exon 3 (AA at 2) /nomgen="APY" /map="11q12" /hgml_locus_uid="LV0168A" + 2111 / 2246 C1 inhibitor, exon 4 pre-msg < 1 > 5003 C1 inhibitor mRNA and introns IVS 335 2110 C1 inhibitor intron A (no splice consensus) IVS 2247 > 5003 C1 inhibitor intron B BASE COUNT 1484 a 1169 c 1268 g 1082 t ORIGIN 1 bp upstream of BamHI site. 1 ggatccagag agtttgcaag acagaggcga agggaaggtc gcaacaacag ttatctccaa 61 gatgctattc gttgaaccca tcctggaggt ttccagcttg ccgacaacca actcaacaac 121 caattcagcc accaaaataa cagctaatac cactgatgaa cccaccacac aacccaccac 181 agagcccacc acccaaccca ccatccaacc cacccaacca actacccagc tcccaacaga 241 ttctcctacc cagcccacta ctgggtcctt ctgcccagga cctgttactc tctgctctga 301 cttggagagt cattcaacag aggccgtgtt gggggatgct ttggtagatt tctccctgaa 361 gctctaccac gccttctcag caatgaagaa ggtggagacc aacatggcct tttccccatt 421 cagcatcgcc agcctcctta cccaggtcct gctcggtaag accctgcttg aattctctcc 481 aggtcatttg ttggacactc ccataagagt caccaatcca gacacttaca aagccatgcc 541 tctgggaaga agctgtaaaa atgggctatt atatattggg ggtggggtag agggatgtat 601 cttttcattc ttgaacattc catcatttca cagtgatgta ataggcacga ttgcttgtaa 661 aactctgtga ctatacaaga acatataaaa taaggtcgca gccactaacc atgtttcatg 721 gcaaggagag gtgataagaa agatgaaatt aggcgcagtg gctcacgcct gtaatcccag 781 cactttggga ggccaaggcg ggtggatcac ctgaggtcag gagttcaaga ccagcctggc 841 caacatggtg aaaccctgtc tctactaaaa atacaaaaat tatcagggag tggtggtgca 901 tgcctgtaat cccagctact tgggcagctg aggcaggaga atcgcttgaa cccaggaggt 961 ggaggttgca gtgagccgag accgcaccat tgcactacag tctgggtgac agagcgagac 1021 tctgtctcaa aaaaaaaaaa aattatcaga gatagaccta gagtagatgt ggttagtact 1081 gccttctagc tctgtgacct tgggcagatc actttaacct ctctgagcct tgagtcctct 1141 tgtgtaaaat agtgatgatg ctatctacct caaaagatta agaagcagaa agccaggccg 1201 ggtgcggtgg ttcacacctg taatcccagc attttaggag gccgaggagg gcagatcacg 1261 aggtcaggag ttcgagacca gcctgactaa catggtgaaa ccccgtctct actaaaaata 1321 aaaagaaatt agctaggcat ggtggtgcac acctgtaacc ccagctactc aggaggctga 1381 ggcaggagaa tcacttgaac acgggaggca gaggttgcag tgagccgaaa tcatgccact 1441 gcactccagc ctgggaagac tgagcaagac tctgtctcaa aaaaaaaaaa aagaagcagc 1501 ctagtgtctg acttagtggg aggtcaaaaa aatgtaaatc ctctgccatc ttgagggatt 1561 actgtcaagt cccatttggt aattacccta ggaatggcac aaacaaatta ctacaagcag 1621 tggggacaga gctattactc cccagagaga attctaaaaa ggctacagaa tctttcttgg 1681 ctgggcacgg tgactcacac ctataatcct ggcactttgg gaggccaagg caggagttca 1741 agaccagcct ggccaacatg ttgaaacccc atctctacta aaaatgcaaa aattagccag 1801 gcatagtgat gcatgcttat tgtcccagct acttgggagg cagaggtggg aggattgctt 1861 gaacctggag attcaagtga gctgagattg caccactgca ttccagcctg ggccaacaaa 1921 gcaagactct gtctcaaaaa aaaaaaaaaa aaaaaaagag agagattgag agaacattcc 1981 agctcagatg atctgtgatc ccctccaaag cagggaatac cctccattcc agcctggtcc 2041 ccaaccctca ttcccaagga aggcccccga ctcatcctgc aagtatcttt catctctgcc 2101 ctttgttgca ggggctgggg agaacaccaa aacaaacctg gagagcatcc tctcttaccc 2161 caaggacttc acctgtgtcc accaggccct gaagggcttc acgaccaaag gtgtcacctc 2221 agtctctcag atcttccaca gcccaggtga gtgcccagga atgggcagtg tctgcagagg 2281 agggtcctga gaggactctg aagggggacc cagcgctggg gaaagaaagg acagagggaa 2341 tgttggagct acagtatcag ggatggactg cagagcaggt gaagaccttg gcaggagcat 2401 taggtcactc caggaactag actgttcttc taatgagacc ttagacaagt ctctggcatt 2461 catcaactgc tttagaataa aaataaccgg gcaggtacag taaaatagtg atgatgctat 2521 ctacctcaaa agattaagaa gcagaaagcc aggctgggcg tggtggctca cacctgtaat 2581 cccagcactt tgggaggccg aggcaggtgg atcacgaggt caggggttcg agaccagcct 2641 gaccaacatg gtgaaaccct gtctctacta aaaatacaaa aattagctgg gcatggtggc 2701 gggcacctgt aatcccagct attcaggagg ctgaggcagg agaattgctt gaacctggga 2761 ggcggaggtt gcagtgagcc gagatgacgc cactgcactc cagcctgggc gacagagcaa 2821 gactccgtct caaaaaaaaa aacaaaaaca aaacaaaaac aaaaaaaaaa aacaaagaag 2881 gagaaagccg ggccgggcat ggtggttctc atctgtaagt tcaaggagtt gaaggtatgc 2941 taggactttt gggaggccaa ggcttcaaga ccagcctggg cagcatggcg aaacctgtct 3001 ccattaaaaa aaaaaaagtt gggggtacgg ctgggcatgg tggctcacac ctgtaatccc 3061 agcacttttg ggaggctgag gtgggtggaa cacctgaggt caggagttca agaccagcct 3121 ggccaacatg gcaaaaccct gtctctatta aaaacacaaa aattagcctg gcatggtggc 3181 aggcgcctat aatcccaact actcaggagg ctgaggcagg agaatcgctt gaacccaaga 3241 gagtgaaggt tgcagtgagc tgagatcatg ccacttcact ccagcctgag tgaaacagca 3301 aaactctgtc tcaaaaaaaa aaaaaggaag aaagaaaaaa ggccaggcgc ggtgactcac 3361 gcctgtaatc gcaacacttt ggcaggccga ggcaggcgat tcacaaggtc aggagttcga 3421 gaccagtctg gctaactaac atagtgaaac tccgtctcta ctgaaaatac aagaaattac 3481 cctggcatgg tggtgtgcac ctgtaatccc agctactcag gaggctgagg caggagaatc 3541 gcttgaacct gggaggcaga ggctgcagtg agccgagatc gcgccactgc actccagcct 3601 ggatgacaga gcaagactct gtctcaaaaa aaaaaggccg ggcgcggtgg ctcatgctgt 3661 aatcccagca ctttgggagg ctgaggcggg cggaccacga ggtcagaaga tcaagaccat 3721 cctggctaac aagatgaaac cctgtctctg ccaaaaaaat acaaaactta gccgggcatg 3781 gtggcaggcg cctgtggtcc caactacttg ggaggctgag gcaggagaat ggcatgaacc 3841 cgggaggcgg agcttgcagt gagccgagat tgcgccactg cactccagcc tgggcaacag 3901 agcgagacac catctcaaaa aaaaaaaaaa aaaatggggc gggcgggcca ggcgcggtgt 3961 ctcacacctg taatcccagc actttgggag gctgaggtgg gcggatcact tgaggtcagg 4021 agttcaagac cagcctggcc aacaccagga aaccctgtct ctgttaaaaa tacaaaaatt 4081 agccaggtgt ggtggcacgc gcctgtagtc ccagcaggag aataacttca acctgggaga 4141 cagaggttgc agtcagctga gatcgcacca ctgcattcca gcctgggtga cagaccgaga 4201 ctctgtctca aaaaaaaaaa aaaagaagaa tacccatatg cattcattaa tatatagggc 4261 tagagggcta gagagctata gacataaaat agacaaaaaa tttttttgct catttttggg 4321 tcaaaggagt cttgggactc taattctttt aatttttgtg ttatgtgaat ttgttatcat 4381 ttacatgtat tatgttatta agtaggtaat aatgataata ctaataataa acttacaaaa 4441 cgatccaatg tagttgtttt cagactttgt tcctcggagc cctaggactt tgcaaagctg 4501 tttctggagt catggtggga gtggggtgtg gggagcctga gcagtgggga agggttcacc 4561 acttcctgtg agagggaaac ggaccagctg ggctctgagc tccccaccca gcctcagcca 4621 gggtccattt tatattgtgg gcttcagaca tgcctttgtt tgaaagcagt tctgctgctt 4681 taaaatgttt gataaccatt gaactaatct acccacctcc ctttttaaaa aaaaaaggaa 4741 aacttttttt taagctgttt tttttgtttt ttgttttttt ttaaactgta aaaacaatac 4801 ttaggtctgg ctcagtgtgc ctgtaattcc aacactgaga ggctgaggta ggaggattgc 4861 ttgaggctag aatttcgaga ctagcctctg ggcaacatag acagacctca tctctacaaa 4921 aaattttaaa aattatccgg gtgtggtacg tgtctgtagt tccagctatg aaggactgag 4981 acgggaggat tgcttgagcc aag // LOCUS RATMHCRTA 1540 bp ss-mRNA ROD 03-JAN-1990 DEFINITION Rat MHC class I non-RT1.A alpha-1-chain mRNA, complete cds. ACCESSION M31038 KEYWORDS cell surface antigen; cell surface glycoprotein; class I gene; integral membrane protein; major histocompatibility complex. SOURCE Rat (strain DA, male) spleen and lymph node Con A blast, cDNA to mRNA, clone 3.6. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 1540) AUTHORS Rada,C., Lorenzi,R., Powis,S.J., van de Bogaerde,J., Parham,P. and Howard,J.C. TITLE Concerted evolution of class I genes in the major histocompatibility complex of murine rodents JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1990) In press STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by J.C.Howard, 27-DEC-1989. FEATURES from to/span description pept 10 969 MHC non-RT1.A alpha-1-chain protein precursor sigp 10 81 MHC non-RT1.A alpha-1-chain signal peptide matp 82 966 MHC non-RT1.A alpha-1-chain protein BASE COUNT 314 a 406 c 480 g 340 t ORIGIN Chromosome 14; RT cluster 2 gene 4. 1 ggatcgcaca tgggggcgat ggcaccgcgc acgctgctcc tgctgctggc ggcggtcctg 61 gcccccaccc agacctgggc gggctcacac tcgctgcggt atttccacac cgccgtgtcc 121 cggcccggcc tcggggagcc ccggttcatt tctgtcggct acgtggacga cacgcagttc 181 gtgcgctacg acagcgacgc ggagaatccg agatacgagc cgcgggcgcg gtggatggag 241 cgggaggggc cggagtattg ggaggagcag acactggtcg ccaagggaca ggagctggat 301 taccgagtga gcctgaggaa cctgctaagc tactacaacc agagcgaggg cggctctcac 361 accatccaga ggatgtatgg ctgtgacgtg gggtccgacg ggagcctcct ccgcgggtat 421 gagcagcacg cctacgacgg ccgcgattac atcgccctga acgaagacct gaaaacatgg 481 gctgtggcag actttgcagc atggatcacc cggagcaagt ggcagcggaa tggtgctgca 541 gagagaagca gggcctatct ggagggcacg tgtgtggagt ggctcctcag atacctggag 601 cgcgggaagg agacgctgct gcgctcagat cccccagagg cacatgtgac ccttcacccc 661 agacctgaag gtgatgtgac cctgaggtgc tgggccctgg gcttctaccc tgctgacatc 721 accctgacct ggcagttgaa tggggaggac ctgacccagg acatggagct tgtggagacc 781 aggcctgcag gggatggaac cttccagaag tgggcatctg tggtggtgcc tcttgggaag 841 gagcagaatt acacatgccg tgtggagcat gaggggctgc ctgagcccct ttcccagaga 901 tgggagcctt ctccatccac cgactccaac ttacttctgt tgttcttgga gctgtggcag 961 tttttgtagt tttggccatc attggagcta tggtggttgt tgtgaggagg aggaggagaa 1021 acacaggcag gtacagctcc cagagctccg ttgtgtctct cccagattgt gaagcatgaa 1081 gacagctgcc tggagtggac tgagtgacag acgatgtgtt caggtctctc ctgtgacatc 1141 cagagccctc agttctcttt agacaccagt gtctgaagtt ccctgtgatt ctatggcttc 1201 agtgtgaaga actgtggagt ccagcctgcc ctacacacca ggaccctgtc cctgcactgc 1261 ctgtgttgcc taccacattc agccttgctg gtccagcctg ggggtggagg gtggggacat 1321 ctgcatcctg tccccctgtg ccaccctgag cttcagcccc tcactccaca ctgagaataa 1381 gaatctgagt gtgaacttga ttgttcacat ccttgacaca gtgtggatag ctttttaaat 1441 tactggatgg aatacttaga ggttttttgt tttggggttt tgctttgttt ccttttgttt 1501 ttgaaaaaat aaatggcaga tggagaagct tccagaaaaa // LOCUS STYLEUCA 1432 bp ds-DNA BCT 03-JAN-1990 DEFINITION S.typhimurium isopropylmalate synthase (leuC) gene, complete cds. ACCESSION M31047 KEYWORDS isopropylmalate synthase. SOURCE S.typhimurium (strain LT2) DNA. ORGANISM Salmonella typhimurium Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 1432) AUTHORS Rosenthal,E.R. and Calvo,J.M. TITLE The nucleotide sequence of leuC from Salmonella typhimurium JOURNAL Unpublished (1990) Dept. Biochem., Cornell Univ., Ithaca, NY 14853 STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by J.M.Calvo, 03-JAN-1990. FEATURES from to/span description pept 22 1416 isopropylmalate synthase (EC 4.2.1.3) BASE COUNT 319 a 411 c 433 g 269 t ORIGIN 1 tgccgcagaa ggggtgtaat catggccaaa acgttatacg aaaaattatt tgatgcccac 61 gtggtctttg aggcgccaaa cgaaacgccg ctgctgtaca tcgaccgcca cttggtgcat 121 gaagtcacct cccgcaggcg tttgacggtc tgcgcgcgca ccatcgccgg tacgtcagca 181 gggaaaacct tcgctacgat ggatcacaac gtctcgacgc agactaaaga cattaatgct 241 tccggtgaaa tggcgcgtat ccagatgcag gagctgatta agaactgtaa cgagttcggc 301 gtcgagctgt atgacctgaa tcacccatat cagggcatcg tccatgtgat ggggccggaa 361 cagggcgtca ccctgccggg catgaccatc gtctgcggcg actcccacac cgccacccac 421 ggcgcgtttg gtgcgctggc cttcggcatc ggcacttctg aggtagaaca tgtactggcg 481 acgcaaaccc tgaaacaggg acgcgctaaa accatgaaga ttgaagtcac gggcaacgcc 541 gcgccgggca ttaccgccaa agatatcgtg ctggcgatca tcggtaaaac cggtagcgcc 601 ggcggcaccg gacacgtggt tgaattttgc ggcgacgcta tccgcgcgct gagtatggaa 661 ggccgcatga cgctgtgcaa tatggcgatt gagatgggcg ccaaagccgg tctggtcgcc 721 ccggatgaaa ccactttcaa ctacgtaaaa gggcgtttgc acgcgccgaa gggccgcgat 781 tttgacgaag ccgtcgagta ctggaaaacg ctgaaaaccg atgacggcgc gacctttgat 841 actgtcgtcg ccctgcgagc agaagagatc gcgccgcagg tgacctgggg cacgaatccg 901 ggccaggtga tttccgtcac cgacatcatc cccgatcccg cctcctttag cgatccggtt 961 gagcgcgcca gcgccgaaaa agcgctggct tatatgggct tacagccggg cgtaccgtta 1021 acggacgttg ctatcgataa agtctttatc ggcccttgta ccaattcccg cattgaagat 1081 ttgcgcgcgc cggcggaggt cggccaaagg gccaaagttg ccgggcgtgc aggcgctggt 1141 ggtgccgggt tcaggtccgg tgaaagcgca gcggaagcgg aaggtctgga caagatcttt 1201 atcgaagcag gatttgaatg gcgcttaccg ggctgttcca tgtgcgtggc cgtgaataac 1261 gaccgcctga acccgggcga gcgctgcgcc tccaccagca accgtaactt tgaaggtcgt 1321 cagggccgcg ggggtcgcac gcatttagtc agcccggcga tggccgccgc tgccgccgtt 1381 accggccact tcgccgacat tcgcagcatc aaataaggaa actaccatgg ca // LOCUS XELHNRNPA 1298 bp ss-mRNA VRT 03-JAN-1990 DEFINITION X.laevis ribonucleoprotein A1a protein, complete cds. ACCESSION M31041 KEYWORDS RNA-binding protein; core protein; ribonucleoprotein. SOURCE X.laevis, cDNA to mRNA, clones XA1[a,b]. ORGANISM Xenopus laevis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae. REFERENCE 1 (bases 1 to 1298) AUTHORS Kay,B.K., Sawhney,R.K. and Wilson,S.H. TITLE Potential for two isoforms of the A1 ribonuclear protein in Xenopus laevis JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 1367-1371 (1990) STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by B.K.Kay, 27-DEC-1989. FEATURES from to/span description pept 10 1107 ribonucleoprotein A1a mRNA < 1 1298 ribonucleoprotein A1a mRNA BASE COUNT 349 a 231 c 382 g 336 t ORIGIN 1 ggagtcacca tgcacaagtc cgaggcaccc aacgagccag agcaacttcg caagctgttc 61 attggaggct tgagttttga aaccacagat gaaagtctcc gcgagcactt tgagcaatgg 121 ggcaccctta cagactgtgt ggttatgagg gatccaaact caaaacgttc ccgtggcttt 181 ggatttgtta catacttatc tacagatgaa gtagatgctg ccatgactgc tcgcccacat 241 aaagtggatg ggcgagtggt tgaacctaaa agggctgtct ctagagagga ttcctctagg 301 cctggtgcac acctcaccgt aaagaaaatc tttgtaggtg gtatcaagga ggacacagaa 361 gaagatcatt tacgagaata tttcgagcaa tatggcaaaa ttgaagttat agagataatg 421 actgaccgag gcagtggcaa gaaaagaggc tttgcatttg tcacatttga agatcatgat 481 tccgttgaca agattgtcat ccagaaatat cacaccgtca acaaccacaa ttctcaagtg 541 cggaaggcac tctccaaaca ggaaatggca agtgtttctg gcagtcagag agaacgtggt 601 ggctctggaa actatggaag ccgtggtggg tttggtaatg ataactttgg tggtcgtggt 661 ggcaactttg gtggcaacag aggaggaggg ggtggatttg gtaatcgagg ttatggtgga 721 gacggctaca atggtgatgg ccaattatgg tggcagccct ccctactcgg gtggaaccga 781 ggctatggtg ctggccaagg aggtggatat ggtgctggcc aaggaggtgg atatggtggt 841 ggtggccaag gaggtggata tggtggaaat ggaggatacg atggttataa tggcggaggc 901 agtggcttca gtggctctgg tggtaacttt ggtagcagtg ggggatataa cgactttggc 961 aactacaaca gtcagtcatc atccaacttt ggcccaatga aaggtggaaa ttatggtggt 1021 ggcagaaatt ctggaccata tggaggtggc tatggcggag ggtctgctag cagcagtagc 1081 ggatatggcg gtgggaggag gttttaattt ttccacaggg gaatatccat ctacatgatt 1141 aaacgaaacg tggaccttgg tttgtgaagc agtgttcaga tacaggtttt aaggttaact 1201 gatgtgacgg atctgaccaa cttcaaattt cacagctact gtgtagctct gttttgtttt 1261 tttgttcttt tccaaaataa agtttttatg attctcta // LOCUS XELHNRNPB 1225 bp ss-mRNA VRT 03-JAN-1990 DEFINITION X.laevis ribonucleoprotein A1b protein, complete cds. ACCESSION M30575 KEYWORDS RNA-binding protein; core protein; ribonucleoprotein. SOURCE X.laevis, cDNA to mRNA, clones XA1[a,b]. ORGANISM Xenopus laevis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae. REFERENCE 1 (bases 1 to 1225) AUTHORS Kay,B.K., Sawhney,R.K. and Wilson,S.H. TITLE Potential for two isoforms of the A1 ribonuclear protein in Xenopus laevis JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 1367-1371 (1990) STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by B.K.Kay, 27-DEC-1989. FEATURES from to/span description pept 10 1065 ribonucleoprotein A1b mRNA < 1 1225 ribonucleoprotein A1b mRNA BASE COUNT 335 a 220 c 353 g 317 t ORIGIN 1 ggagtcacca tgcacaagtc cgaggcaccc aacgagccag agcaacttcg caagctgttc 61 attggaggct tgagttttga aaccacagat gaaagtctcc gcgagcactt tgagcaatgg 121 ggcaccctta cagactgtgt ggttatgagg gatccaaact caaaacgttc ccgtggcttt 181 ggatttgtta catacttatc tacagatgaa gtagatgctg ccatgactgc tcgcccacat 241 aaagtggatg ggcgagtggt tgaacctaaa agggctgtct ctagagagga ttcctctagg 301 cctggtgcac acctcaccgt aaagaaaatc tttgtaggtg gtatcaagga ggacacagaa 361 gaagatcatt tacgagaata tttcgagcaa tatggcaaaa ttgaagttat agagataatg 421 actgaccgag gcagtggcaa gaaaagaggc tttgcatttg tcacatttga agatcatgat 481 tccgttgaca agattgtcat ccagaaatat cacaccgtca acaaccacaa ttctcaagtg 541 cggaaggcac tctccaaaca ggaaatggca agtgtttctg gcagtcagag agaacgtggt 601 ggctctggaa actatggaag ccgtggtggg tttggtaatg ataactttgg tggtcgtggt 661 ggcaactttg gtggcaacag aggaggaggg ggtggatttg gtaatcgagg ttatggtgga 721 gacggctaca atggtgatgg ccaattatgg tggcagccct ccctactcgg gtggaaccga 781 ggctatggtg ctggccaagg aggtggatat ggtgctggcc aaggaggtgg atatggtggt 841 ggtggccaag gaggtggata tggtggaaat ggaggatacg atggttataa tggcggaggc 901 agtggcttca gtggctctgg tggtaacttt ggtagcagtg ggggatataa cgactttggc 961 aactacaaca gtcagtcatc atccaacttt ggcccaatga aaggtggaaa ttatggtggt 1021 ggcagaaatt ctggaccata tggaggggaa tatccatcta catgattaaa cgaaacgtgg 1081 accttggttt gtgaagcagt gttcagatac aggttttaag gttaactgat gtgacggatc 1141 tgaccaactt caaatttcac agctactgtg tagctctgtt ttgttttttt gttcttttcc 1201 aaaataaagt ttttatgatt ctcta //