Path: utzoo!utgpu!watserv1!watmath!uunet!snorkelwacker!bionet!life!mia From: mia@life (Mia McLeod) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003212328.AA21736@life.LANL.GOV> Date: 21 Mar 90 23:28:42 GMT Sender: daemon@genbank.BIO.NET Lines: 619 Approved: lear@genbank.bio.net LOCUS HOBNC229E 1696 bp ss-RNA VRL 15-MAR-1990 DEFINITION Human coronavirus nucleocapsid protein mRNA, complete cds. ACCESSION J04419 M22052 KEYWORDS nucleocapsid protein. SOURCE Human coronavirus (strain 229E), cDNA to viral RNA, passed in human fetal lung cells L132. ORGANISM Human coronavirus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Coronaviridae. REFERENCE 1 (bases 1 to 1696) AUTHORS Schreiber,S.S., Kamahora,T. and Lai,M.M.C. TITLE Sequence analysis of the nucleocapsid protein gene of human coronavirus 229E JOURNAL Virology 169, 142-151 (1989) STANDARD simple staff_entry FEATURES from to/span description pept 147 1316 nucleocapsid protein BASE COUNT 507 a 354 c 361 g 474 t ORIGIN 76 bp upstream of PstI site. 1 cggaaggtcc gtaaattcac aaaatagcac aggctgggtt ttctacgtac gagtaaaaca 61 cggtgatttt tctgcagtga gctctcccat gagcaacatg acagaaaacg aaagattgct 121 tcattttttc taaactgaac gaaaagatgg ctacagtcaa atgggctgat gcatctgaac 181 cacaacgtgg tcgtcagggt agaatacctt attctcttta tagccctttg cttgttgata 241 gtgaacaatc ttggaaggtg atacctcgta atctggtacc catcaacaag aaagacaaaa 301 ataagcttat aggctattgg aatgttcaaa aacgtttcag aactagaaag ggcaaacggg 361 tggatttgtc acccaagctg catttttatt atcttggcac aggaccccat aaagatgcaa 421 aatttagaga gcgtgttgaa ggtgtcgtct gggttgctgt tgatggtgct aaaactgaac 481 ctacaggcca cggcgccagg cgcaagaatt cagaaccaga gataccacac ttcaatcaaa 541 agctcccaaa tggtgttact gttgttgaag aacctgactc ccgtgctcct tcccggtctc 601 agtcgaggtc gcagagtcgc ggtcctggtg aatccaaacc tcaatctcgg aatccttcaa 661 gtgacagata ccataacagt caggatgaca tcatgaaggc agttgctgcg gctcttaaat 721 ctttaggttt tgacaagcct caggaaaaag ataaaaagtc agcgaaaacg ggtactccta 781 agccttctcg taatcagagt cctgcttctt ctcaaacttc tgccaagagt cttgctcgtt 841 ctcagagttc tgaaacaaaa gaacaaaagc atgaaatcga aaagccacgg tggaaaagac 901 agcctaatga tgatgtgaca tctaatgtca cacaatgttt tggccccaga gaccttgacc 961 acaactttgg aagtgcaggt gttgtggcca atggtgttaa agctaaaggc tatccacaat 1021 ttgctgagct tgtgccgtca acagctgcta tgctgtttga tagtcacatt gtttccaaag 1081 agtcaggcaa cactgtggtc ttgactttca ctactagagt gactgtgccc aaagaccatc 1141 cacacttggg taagtttctt gaggagttaa atgcattcac tagagaaatg caacaacagc 1201 ctcttcttaa ccctagtgca ctagaattca acccatctca aacttcacct gcaactgctg 1261 aaccagtgcg tgatgaattt tctattgaaa ctgacataat tgatgaagta aactaaacat 1321 gccactgtgt tgtttgaaat tcaggcttta gttggaattt tgcttttgct cttgctttta 1381 ttatctttct ttaatacatt gcttttctct gatctatgta tgatggtacg atcagagcta 1441 cttttaatta acatgatccc ttgctttggc ttgataagga tctagtctta tacacaatgg 1501 taagccagtg gtagtaaagg tataagaaat ttgctactat gttactgaac ctaggtgaac 1561 gctagtataa ctcattacaa atgtgctgga gtaatcaaag atcgcattga cgagccaaca 1621 atggaagagc cagtcatttg tcttgagacc tatctagtta gtaactgcta atggaacggt 1681 ttcgatatgg atacac // LOCUS OFA81MBAB 1959 bp ds-DNA INV 15-MAR-1990 DEFINITION O.fallax macronuclear (81-MAC family, version B) DNA, regions Kp-b and pSRRHG-b. ACCESSION M13031 M13032 KEYWORDS 81-MAC chromosome family; alternate processing. SOURCE O.fallax (subkaryonide 3.5) macronuclear DNA, region Kp-b and pSRRHG-b, clones pMA[82d,83,mu-1A1,XX-7,83]. ORGANISM Oxytricha fallax Eukaryota; Animalia; Metazoa; Ciliophora; Polyhymenophora; Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae. REFERENCE 1 (bases 1 to 1520) AUTHORS Herrick,G., Cartinhour,S.W., Williams,K.R. and Kotter,K.P. TITLE Multiple sequence versions of the Oxytricha fallax 81-MAC alternate processing family JOURNAL J. Protozool. 34, 429-434 (1987) STANDARD full staff_review REFERENCE 2 (bases 1902 to 1941) AUTHORS Herrick,G., Hunter,D., Williams,K. and Kotter,K. TITLE Alternative processing during development of a macronuclear chromosomal family in Oxytricha fallax JOURNAL Genes Dev. 1, 1047-1058 (1987) STANDARD full staff_entry REFERENCE 3 (bases 1521 to 1782) AUTHORS Hunter,D.J., Williams,K., Cartinhour,S. and Herrick,G. TITLE Precise excision of telomere-bearing transposons during Oxytricha fallax macronuclear development JOURNAL Genes Dev. 3, 2101-2112 (1989) STANDARD full staff_entry REFERENCE 4 (bases 1521 to 1959) AUTHORS Herrick,G. JOURNAL Unpublished (1987) Univ. of Utah, Salt Lake City, Utah 84132 STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly provided by G.Herrick, 12-DEC-1986. This sequence would be named "pBSRRHGKp-B" by the convention in [1]. The 81-MAC chromosome family is created by alternative processing of the micronuclear DNA. The 81-MAC family consists of three sizes of macronuclear chromosomes: 4.9 kb (MACI), 2.9 kb (MACII), and 1.6 kb (MACIII). Alternative processing results from alternative choice of chromosome break/telomere-addition sites. The 1.6 kb region in common between the three chromosomes bears a transcribed open reading frame, the conceptual translation product of which is homologous to ADP/ATP carrier proteins from plants and metazoans. There are three distinct micronuclear loci (sequence versions),vA, vB, and vC. Alternative processing of each micronuclear version independently gives rise to a I+II+III family of macronuclear chromosomes. The open reading frame is conserved in all three versions. Little is known about the structure of vB micronuclear DNA (no clones), but vA and vC micronuclear DNAs bear micronucleus-limited sequences called internal eliminated sequences (IESs). vA and vC have small IESs in common, but in addition, vC bears two large transposons, TBE1-1 and -2, which also are IESs. IESs are precisely excised, leaving one short flanking direct repeat in macronuclear DNA. The telomeric sequence "[g(4)t(4)]4 g(4)" is added after position 1942 in the macronuclear DNA (MACIII) clone pMA83, and "[g(4)t(4)]4 g(4)t(2)" is the telomeric sequence added after position 1960 in the macronuclear DNA (MACII or MACIII) clone pMA-mu-1A1. FEATURES from to/span description ORF 1439 543 (c) ORF homologous to ADP/ATP carriers (tag, taa=Gln, not stop, ciliate code) 1211-1209 first atg DNA < 1 1941 macronuclear DNA (MACIII) clone pMA83 (telomere addition site) DNA < 1 1959 macronuclear DNA, clone pMA-mu-1A1 (telomere addition site) BASE COUNT 636 a 325 c 356 g 641 t 1 others ORIGIN 249 bp upstream of SphI site. 1 ggctctaaaa gaaaagatgt tcatgatctt gtcatggatc cttattcata gcaggggagt 61 ggnaggcttc acttgctggt tggtctcata tccctaagat ataattaaaa ctagacttca 121 ggttgctagg agccaagaat ttgcaaatta tagtcgatat ataagagatg gaggaatgat 181 tgaatgtgca aaatatatct ttaagaatga acatgggttt atgggatttt ggagagggtt 241 ctcagcatgc agtgcaagag cagtatttgc taattctttc atgtttgtgg cttatgaata 301 tgcttagaaa aaagcgagag gaattattga atgaataata gtggatttat caaagttttg 361 gaatgatata atgctttata atgtacttta tcaaagtaac ttaagactgt gatattaata 421 tcaactaaga ttatatataa atttaatatt tttaaatagg tttaaataac aaataaatct 481 ctactttaac aaaaaagcat gtgataatgc tctatgttag aagataattt atttctgaat 541 tctcagataa ttgcgagatt ttcttttcct gaagggtgag cagctcccat acctccagta 601 gctgtagtat aagtagcaac taatttttta ttgaaggcat ctgtgtatgg atcatgaata 661 tcgtaatcga taccactttg atagtggaat ctctatggtt gccagaattc ttgatcatag 721 tagttttcgt tatagtagtc taccaagaat tgagaaagat aacaaatcaa gaacaatctg 781 aggaagtagg cttcacctcc tgcatagaat gatccaaagt tagacatcca ctttgagtta 841 cactcgtact ttatgatctt gttgaagcaa tcaatcatgc cgttatatgg catttgaccg 901 tttggaaggg gtctcatggt gtgtagtctt gttctgatca tatcaaaagg catacttaca 961 acagttccaa tagcaacagc tacggcagtt ccccacaatc tattaatcca atgaggacca 1021 aagaagaagt aggagttctc cttgcaccaa tcgtagatgt tggtcattga tgaacaaata 1081 gctgcaagct taaaaccgtt ggcaccagca cctctgaaga gagcaccttc ttcagcaact 1141 ttggcaagtc cttaaattgt atttgagtag tttcttctgg cagcttgtgg ataaagctca 1201 tcaacctgca ttctattgta gacgatatcg atgggatttg tcactactcc agcaataaat 1261 cctccgagta ctcctgctgc taccaagaag tctggacgag caactcttct aggatcttta 1321 tttaccttat cgtagaaata accgaaggct gttactctag cagtagtgta acaaacagtt 1381 ctgaagaaga atgtgtcgaa actataccaa tataaattag ctaaatttat tgcaattcct 1441 caattataag gttgagagag ctttttggat aacccaaatt ttgtttataa acttacgcag 1501 aatagaattt tctgagtcca ccgcctgctg cataaatctc ttccataatt tagaatggat 1561 accaaccctt ttgataacca agaccagaga aggtcttgcc ctcttacagc atttaagatc 1621 tgattctaac catatcgagt ggttaagtct atattacatt aggaatatga ttaatcattg 1681 ctaataagat agaaactgtg ctaaaggata ttaacttaca gcagcatgag ttatgagagc 1741 aatgacattg gcagcagcaa atctttcata gttcatgcgt tggtaccttc ttctccagta 1801 ctcaactaaa aagcaatttt ataaatcgat gattcgatat tttattgata aatttacctt 1861 ccatttaagt aggcatcttt cttgattgct tattttaaaa taattataat aactttatat 1921 taattatgtt tattacaaat tatttcaatt aagctcatt // LOCUS OFA81MCA2 1232 bp ds-DNA INV 15-MAR-1990 DEFINITION O.fallax micronuclear (81-MAC family, version C) DNA, regions SRRHG-c (partial), mic-gH-c and GKH-c (partial). ACCESSION M13037 M13029 M13038 N00056 M13038 KEYWORDS 81-MAC chromosome family; TBE1 telomere bearing element; alternate processing; transposon. SEGMENT 2 of 3 SOURCE O.fallax (subkaryonide 3.5) micronuclear DNA, regions mic-gH-c and SRRHG-c, clones L47-mic[2,8,10,20,22,26]. ORGANISM Oxytricha fallax Eukaryota; Animalia; Metazoa; Ciliophora; Polyhymenophora; Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae. REFERENCE 1 (sites; telomere-bearing element description) AUTHORS Herrick,G., Cartinhour,S., Dawson,D., Ang,D., Sheets,R., Lee,A. and Williams,K. TITLE Mobile elements bounded by C-4-A-4 telomeric repeats in Oxytricha fallax JOURNAL Cell 43, 759-768 (1985) STANDARD full staff_review REFERENCE 2 (bases 1 to 827) AUTHORS Herrick,G., Cartinhour,S.W., Williams,K.R. and Kotter,K.P. TITLE Multiple sequence versions of the Oxytricha fallax 81-MAC alternate processing family JOURNAL J. Protozool. 34, 429-434 (1987) STANDARD full staff_review REFERENCE 3 (bases 828 to 1232) AUTHORS Hunter,D.J., Williams,K., Cartinhour,S. and Herrick,G. TITLE Precise excision of telomere-bearing transposons during Oxytricha fallax macronuclear development JOURNAL Genes Dev. 3, 2101-2112 (1989) STANDARD full staff_entry REFERENCE 4 (bases 1 to 1232) AUTHORS Herrick,G. JOURNAL Unpublished (1987) Univ. of Utah, Salt Lake City, Utah 84132 STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [2] kindly provided by G.Herrick, 12-DEC-1986. Bases 1-398 are from region mic-gH-c and 118-827 from SRRHG-c as referred to in [2]. This sequence would be named "mic-gHGh-c" by the convention in [2]. The 81-MAC chromosome family is created by alternative processing of the micronuclear DNA. The 81-MAC family consists of three sizes of macronuclear chromosomes: 4.9 kb (MACI), 2.9 kb (MACII), and 1.6 kb (MACIII). Alternative processing results from alternative choice of chromosome break/telomere-addition sites. The 1.6 kb region in common between the three chromosomes bears a transcribed open reading frame, the conceptual translation product of which is homologous to ADP/ATP carrier proteins from plants and metazoans. There are three distinct micronuclear loci (sequence versions),vA, vB, and vC. Alternative processing of each micronuclear version independently gives rise to a I+II+III family of macronuclear chromosomes. The open reading frame is conserved in all three versions. Little is known about the structure of vB micronuclear DNA (no clones), but vA and vC micronuclear DNAs bear micronucleus-limited sequences called internal eliminated sequences (IESs). vA and vC have small IESs in common, but in addition, vC bears two large transposons, TBE1-1 and -2, which also are IESs. IESs are precisely excised, leaving one short flanking direct repeat in macronuclear DNA. When TBE1-1 is excised one flanking "aat" probably remains in macronuclear DNA, as judged from oligomer hybridization experiments. When TBE1-2 is excised one flanking "aat" remains in macronuclear DNA; the sequence of the resulting macronuclear DNA can be found in a separate entry, accession number M25391. FEATURES from to/span description rpt 38 114 3' TBE1-1 inverted terminal repeat rpt 98 114 telomere sequence of TBE1-1 rpt 115 117 3' TBE1-1 duplicated insertion target sequence trns < 1 114 TBE1-1 insertion element rpt 1048 1050 5' TBE1-2 duplicated insertion target sequence rpt 1051 1067 telomere sequence of TBE1-2 rpt 1051 1128 5' TBE1-2 inverted terminal repeat trns 1051 > 1232 TBE1-2 insertion element BASE COUNT 379 a 232 c 224 g 394 t 3 others ORIGIN About 3.2 kb after segment 1. 1 agaccccgga tagcttgtaa tttttgtctc gcatttaatt aataacccaa cccctaacaa 61 attccctaca aatcaataca ctaaaccatc tacttaaggg gttttggggt tttgaatgat 121 ccaaagttag acatccactt tgagttacac tcgtacttta tgatcttgtt gaagcaatca 181 atcatgccgt tatatggcat ttgaccgttt ggtagtggtc tcatggtgtg tagtcttgtt 241 ctgatcatat cgaaaggcat acttacagca gttcctatag caacagctac ggcagtaccc 301 cacaatctat taatccaatg aggaccaaag aagaagtagg agttttcctt gcaccaatcg 361 tagatgtttg tcattgatga acaaatagct gcaagcttaa aaccgttggc accagcacct 421 ctgaagagag caccttcttc agcaactttg gcaagtcctt aaattgtatt tgagtaattt 481 cttctggcag cttgtggata aagctcatca acttgcattc tattgtagac gatatcgatt 541 ggatttgtca ctacaccagc aataaatcct ccgagtactc ctgctgctac caagaagtct 601 ggacgagcaa ctcttctggg atctttattt accttatcgt agaaataacc gaaggctgtt 661 actctggcag tagtgtaaca aacagttctg aagaagaatg tgtcgaaact ataccaatat 721 aaattagcta aatttattgc aattcctcaa ttataatgtt gagagagaac tttatataag 781 ccaaattttg tttatacact tacgcagaat agaatttttt gagtccacct cctgctgcat 841 aaatctcttc cataatttag aatggatacc aacccttttg ataaccaagg cctgagaagg 901 tcttgccctc ttacagcatt tgagatctga ttctaaccat atcgagtggt taagtctata 961 ttacatttag aatatgatta atcattgcta ataagataga aaatgtgcta tagaatacta 1021 acttacagca gcatgagtta tgagagcaat caaaacccca aaacccctta agtagatggt 1081 ttagtgtatt gatttgtagg gaatttgtta ggggttgggg ttattaatag gttttaatgt 1141 gaaatttaaa gtatatmtat ttaactttaa tcactcaaaa tmtacttttg gatcgtgtgg 1201 gagnggtctg aaggtttatc ttacttaacc ac // LOCUS OFA81MCAC 467 bp ds-DNA INV 15-MAR-1990 DEFINITION O.fallax macronuclear (81-MAC family) TBE1-2-less vC DNA region. ACCESSION M25391 KEYWORDS 81-MAC chromosome family. SOURCE O.fallax (subkaryonide 3.5) macronuclear DNA, region HGHK-c. ORGANISM Oxytricha fallax Eukaryota; Animalia; Metazoa; Ciliophora; Polyhymenophora; Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae. REFERENCE 1 (bases 1 to 467) AUTHORS Hunter,D.J., Williams,K., Cartinhour,S. and Herrick,G. TITLE Precise excision of telomere-bearing transposons during Oxytricha fallax macronuclear development JOURNAL Genes Dev. 3, 2101-2112 (1989) STANDARD full staff_entry REFERENCE 2 (bases 1 to 467) AUTHORS Herrick,G. JOURNAL Unpublished (1989) Univ. of Utah, Salt Lake City, Utah 84132 STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence [1] kindly provided by G.Herrick, 31-OCT-1989. This sequence would be named "HGKH-c" by the conventions used in the Herrick laboratory. The 81-MAC chromosome family is created by alternative processing of the micronuclear DNA. The 81-MAC family consists of three sizes of macronuclear chromosomes: 4.9 kb (MACI), 2.9 kb (MACII), and 1.6 kb (MACIII). Alternative processing results from alternative choice of chromosome break/telomere-addition sites. The 1.6 kb region in common between the three chromosomes bears a transcribed open reading frame, the conceptual translation product of which is homologous to ADP/ATP carrier proteins from plants and metazoans. There are three distinct micronuclear loci (sequence versions),vA, vB, and vC. Alternative processing of each micronuclear version independently gives rise to a I+II+III family of macronuclear chromosomes. The open reading frame is conserved in all three versions. Little is known about the structure of vB micronuclear DNA (no clones), but vA and vC micronuclear DNAs bear micronucleus-limited sequences called internal eliminated sequences (IESs). vA and vC have small IESs in common, but in addition, vC bears two large transposons, TBE1-1 and -2, which also are IESs. IESs are precisely excised, leaving one short flanking direct repeat in macronuclear DNA. The micronuclear IES sequence and the ends of TBE1-2 (excision points annotated below) can be found in separate entries under accession numbers M13039 and M13037. FEATURES from to/span description site 273 275 TBE1-2 insertion target sequence (excision site after 275) site 451 454 IES imperfect duplication sequence (excission site after 454) BASE COUNT 155 a 79 c 65 g 168 t ORIGIN 1 ataagccaaa ttttgtttat acacttacgc agaatagaat tttttgagtc cacctcctgc 61 tgcataaatc tcttccataa tttagaatgg ataccaaccc ttttgataac caaggcctga 121 gaaggtcttg ccctcttaca gcatttgaga tctgattcta accatatcga gtggttaagt 181 ctatattaca tttagaatat gattaatcat tgctaataag atagaaaatg tgctatagaa 241 tactaactta cagcagcatg agttatgaga gcaatgacat tagcagcagc aaatctttca 301 tagttcatgc gttggtacct tcttctccag tactcaacta aaacgaaatt ttagaaatca 361 atgattcgat attttattga taaatttacc ttccatttaa gtaggcatct ttcttgattg 421 cttattttaa aataattata ataactttat attaattatg tttatta // LOCUS RATPRPS1 871 bp ds-DNA ROD 22-JAN-1990 DEFINITION Rat phosphoribosylpyrophosphate synthetase (PRPS1) gene, exon 1. ACCESSION M31078 J05251 KEYWORDS phosphoribosylpyrophosphate synthetase. SEGMENT 1 of 7 SOURCE Rat (Sprague-Dawley) liver DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 871) AUTHORS Shimada,H., Taira,M., Yamada,K., Iizasa,T. and Tatibana,M. TITLE Structure of the rat PRPS1 gene encoding phosphoribosylpyrophosphate synthetase subunit I JOURNAL J. Biol. Chem. 265, 3956-3960 (1990) STANDARD full staff_entry COMMENT Draft entry and computer readable sequence for [1] kindly provided by M.Tatibana, 03-JAN-1990 FEATURES from to/span description pept 370 + 491 phosphoribosylpyrophosphate synthetase, exon 1 pre-msg 241 > 871 PRSP1 mRNA and introns IVS 492 > 871 PRPS1 intron A signal 159 166 CAAT box signal 213 221 TATA box binding 138 147 Sp1 binding site binding 198 207 Sp1 binding site binding 231 240 Sp1 binding site BASE COUNT 180 a 214 c 281 g 196 t ORIGIN 14 bp upstream of RsaI site. 1 tccaggtaag acgtacactt ggtaattaga gtcagtaaac aagccctcag gatgggctgc 61 gcctgcgttg tggctgtctt tgtgatgtga aagtgcttta atttaacccc tctcatgcct 121 ttgcacaatg ctggaagact ccgcccccac ccgggtccag ccaatccgga aaggctgggt 181 ggagaacttc ctttgtaatc ccgccccctg ggtaatttaa tgccgcgcgc tgggcgggaa 241 tgtaagatgg cggagtagca acgcggttct gttggtgttc aggttcccta ctgacttccc 301 ttccagtggc agcggcggag gcggcagtgg cagcggcaag cactgagcac gtttgggtag 361 ttgtccaaga tgccgaatat caaaatcttc agcgggagct cccaccagga cttatcccag 421 aaaattgctg accgcctggg cctggagcta ggcaaggtgg tgactaagaa attcagcaac 481 caggagacct ggtaaggacg caattggcac cttgagtgta cctgacctcc ccaagcagtg 541 gcaccttgag ggatggagcg accctgggat ttcccggcgc agggggaggg tagaaagggg 601 cagcttgccc agcgggctga atccgttatt ttacctccta ggagggtcgc cttcatcctc 661 cccacgctcg gttagtggag ccaagatgga ggggggacgt gaggccgcta tgtttgaaag 721 attggggatg gaggacctaa tgtcgagggg aaatggcctc ctgggatgtc tggaggggta 781 tgggcgctta gctttcggcg tggggacagc tggcttgtcg cttcactgtg gagacagtag 841 attggattcg gttcgctttc ggcgcgtcga c // LOCUS RATPRPS2 1406 bp ds-DNA ROD 22-JAN-1990 DEFINITION Rat phosphoribosylpyrophosphate synthetase (PRPS1) gene, exon 2. ACCESSION M31079 J05251 KEYWORDS phosphoribosylpyrophosphate synthetase. SEGMENT 2 of 7 SOURCE Rat (Sprague-Dawley) liver DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 1406) AUTHORS Shimada,H., Taira,M., Yamada,K., Iizasa,T. and Tatibana,M. TITLE Structure of the rat PRPS1 gene encoding phosphoribosylpyrophosphate synthetase subunit I JOURNAL J. Biol. Chem. 265, 3956-3960 (1990) STANDARD full staff_entry COMMENT Draft entry and computer readable sequence for [1] kindly provided by M.Tatibana, 03-JAN-1990 FEATURES from to/span description pept + 716 + 899 phosphoribosylpyrophosphate synthetase, exon 2 pre-msg < 1 > 1406 PRSP1 mRNA and introns IVS < 1 715 PRPS1 intron A IVS 900 > 1406 PRPS1 intron B BASE COUNT 400 a 274 c 256 g 476 t ORIGIN About 10.5 kb after segment 1. 1 gaattctgtg gaccaggcta gtgtcaaact cataacgaga tctgcctgcg tctctctgtc 61 tcccaagtac tggaccacca catccagcca attcctgttc ttaagactga ccaacctcat 121 ccctccagac catagtagtt agcaagactt tctgcttaat tgagagtagt tagcacaaag 181 agggcagggc ccacatctgt ttcattcacc attacatatt cctagtagag tacttagttt 241 gacgtgaata ttgaatactt tagcaaacat acactctgat aagagggtac tgtcttctct 301 atatgcagca tctttacaga acagtggtga ttcatttctg aggatttttc ttccttatgt 361 gtggactata atagtcacta ttaatagcgg atttggtatt atgtctgatg gccaccataa 421 aaaattacaa tacaattaca tctttataaa tactttagta tgtgtaaagt cagccagtct 481 ttttcaatct gtgccacact tataaactca gaatatatat atagtgagct gtaatgaact 541 ggatggtaag ctccttctgc tatgcaggtt cctttaggtg ttctcccaaa gtctgaagta 601 atcaataccc acatgtagct gtaacccacc catagcatat attaatgctg atcctatgac 661 catggtgctt agaaaaatct gttgtttata ttcattctcc ttttttctat tttagtgtgg 721 aaattgggga gagtgttcgt ggagaggatg tctacattgt tcagagtggc tgcggtgaga 781 taaatgacaa tctaatggag cttttgatca tgatcaatgc ttgcaagatc gcttctgcca 841 gccgggttac tgcggtcatc ccatgcttcc cttatgcccg gcaggataag aaggataagg 901 taggaatgaa tttttttatt gatgttgatc agacctagtc cttaatggta ggctagtgct 961 ctaccactga gttatacctt cagctcagaa tctttctaat gtaggggaaa gaggaacatt 1021 ctccaaagtc acaaagtccc tagctatcag ttacatatac atgtttgtta gatgcaccat 1081 tggtgttaca gtggtgaata ttgctgcctt ccaaaatatt tccttaagta ttccctatct 1141 ttacatcaat gtcatataat tgattttaaa agcagtacgt atatattata tattttactt 1201 aagtatttta actttcagtt agatgacaag aattgttttc atagctaaaa gtatgatagt 1261 ttaattcaaa tcccacagaa atccatttgt aagcaaatgt tgttaaatga ctgacattgg 1321 agtgcatggc cttacttttt atacattatt ttatttattt acatcctaaa ggttgcctct 1381 cctcctagtt cccccttgta gaattc // LOCUS RATPRPS3 633 bp ds-DNA ROD 22-JAN-1990 DEFINITION Rat phosphoribosylpyrophosphate synthetase (PRPS1) gene, exon 3. ACCESSION M31080 J05251 KEYWORDS phosphoribosylpyrophosphate synthetase. SEGMENT 3 of 7 SOURCE Rat (Sprague-Dawley) liver DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 633) AUTHORS Shimada,H., Taira,M., Yamada,K., Iizasa,T. and Tatibana,M. TITLE Structure of the rat PRPS1 gene encoding phosphoribosylpyrophosphate synthetase subunit I JOURNAL J. Biol. Chem. 265, 3956-3960 (1990) STANDARD full staff_entry COMMENT Draft entry and computer readable sequence for [1] kindly provided by M.Tatibana, 03-JAN-1990 FEATURES from to/span description pept + 401 + 499 phosphoribosylpyrophosphate synthetase, exon 3 pre-msg < 1 > 633 PRSP1 mRNA and introns IVS < 1 400 PRPS1 intron B IVS 500 > 633 PRPS1 intron C BASE COUNT 206 a 95 c 123 g 209 t ORIGIN About 2.3 kb after segment 2. 1 aagctttatg tatatacctc ctcctgtaaa taaattagat acatgaaata cacaaaagct 61 atagagtaaa atctgttttt aaggtctaaa gtcccagcaa ataataccat ttggatcttc 121 tggcaataca atgatgtgca taggggagag gggtatactt gtcctataaa aagagaagca 181 acttaactga gaaatacaac tagtttgtat aaattattat tctgtagaat aatgttagtt 241 attattatta gaattattct gtataatcat taaatataaa tagttaccac tgaatttaca 301 tgccatatgt ggcatatagg taagtgataa tgtttctcaa gcaaatgaat tgttttcatc 361 ttggtttttg attttttttt tttcctttcc ttctattcag agccgggctc caatctcagc 421 taagcttgtt gcaaatatgc tatctgtagc aggtgcggat catattatca ccatggatct 481 acatgcatct cagattcagg tataagttac agctaaacac cgagagttag aagggcgctg 541 caactggagg ctgaaagatg aagcaagaag tttagggttt gctagtatgg gaagagcata 601 ggctttaaga ttagaacgag tctggatgct tct // LOCUS RATPRPS4 1065 bp ds-DNA ROD 22-JAN-1990 DEFINITION Rat phosphoribosylpyrophosphate synthetase (PRPS1) gene, exon 4. ACCESSION M31081 J05251 KEYWORDS phosphoribosylpyrophosphate synthetase. SEGMENT 4 of 7 SOURCE Rat (Sprague-Dawley) liver DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 1065) AUTHORS Shimada,H., Taira,M., Yamada,K., Iizasa,T. and Tatibana,M. TITLE Structure of the rat PRPS1 gene encoding phosphoribosylpyrophosphate synthetase subunit I JOURNAL J. Biol. Chem. 265, 3956-3960 (1990) STANDARD full staff_entry COMMENT Draft entry and computer readable sequence for [1] kindly provided by M.Tatibana, 03-JAN-1990 FEATURES from to/span description pept + 326 + 450 phosphoribosylpyrophosphate synthetase, exon 4 pre-msg < 1 > 1065 PRSP1 mRNA and introns IVS < 1 325 PRPS1 intron C IVS 451 > 1065 PRPS1 intron D BASE COUNT 313 a 194 c 260 g 298 t ORIGIN About 1.6 kb after segment 3. 1 gagctctcta accaagtggg tcctcaacat caaacttagg ctcctttacc tgttaaacca 61 tctcactagc cccccctttt attatcctga ctaattgatt gttgattggg tgcacatatg 121 ctaaagcgtg tgaatggagg tcgggaagat aactttgagt agtcacttct tctgtgtgag 181 tcccagggag caaactcctc aagacatcag acttaacagc agagaccttt gtcagatgag 241 ccatctctct ggatctgatt tttagacatt cataagtgga agaaaagaaa aataagacaa 301 aacttaaccc actttctttc tgcagggctt ctttgatatc ccagtggaca atttatacgc 361 agagccagct gtcctgaagt ggattcggga gaacatatct gagtggagaa actgtactat 421 tgtctcacct gacgctggcg gagccaagag gtatggtaat gattactgtt gttcttaaaa 481 taatggactg tgtcaggcat tggcagtaca ggcttttatc tcaacacctg ggaggcagag 541 gcagtggatg tctgatttca aagccagcct ggtctacaga gtggttttga ggacagagaa 601 gctgttaaag agagaaaaaa aaaagccttt cttaaaccaa cagtccttgc gttatgcttg 661 actaccacat tagcaaaaca acactgctgg attttatcga gatttgcaat gaaaggcatt 721 tattcttaaa cccaatatta atagataagg gagctttaca ttccttggtt gtggctcagt 781 ccctggaagc tctggtggac cggtcagccc caccccgtgt tcttcctagc gtaggtagat 841 gctggagagc agtggggcgg aagtgggtgg atgggatgga ggggggcagt tgtgtagggg 901 taactgggaa gggggatatc atttgatata aaggaatgga atgattaata aaaaatttaa 961 agtttaaaat ccttttacaa agctgttggt tagaccattt gatgcctgga ttaaaatatt 1021 aaacaaagag ggaaataaag tgtatggtat ttgaatttaa agctt // LOCUS RATPRPS5 898 bp ds-DNA ROD 22-JAN-1990 DEFINITION Rat phosphoribosylpyrophosphate synthetase (PRPS1) gene, exon 5. ACCESSION M31082 J05251 KEYWORDS phosphoribosylpyrophosphate synthetase. SEGMENT 5 of 7 SOURCE Rat (Sprague-Dawley) liver DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 898) AUTHORS Shimada,H., Taira,M., Yamada,K., Iizasa,T. and Tatibana,M. TITLE Structure of the rat PRPS1 gene encoding phosphoribosylpyrophosphate synthetase subunit I JOURNAL J. Biol. Chem. 265, 3956-3960 (1990) STANDARD full staff_entry COMMENT Draft entry and computer readable sequence for [1] kindly provided by M.Tatibana, 03-JAN-1990 FEATURES from to/span description pept + 109 + 282 phosphoribosylpyrophosphate synthetase, exon 5 pre-msg < 1 > 898 PRSP1 mRNA and introns IVS < 1 108 PRPS1 intron D IVS 283 > 898 PRPS1 intron E BASE COUNT 255 a 174 c 179 g 290 t ORIGIN About 2.7 kb after segment 4. 1 gcatgccagg ccagctgtct accactaaag acactcctcc cagccttgga agccactttt 61 gcctcttttg gattttgtcc ttaactttga acatctccta ttttacagag tgacctccat 121 tgcagaccga ttgaatgtgg attttgcttt gattcacaaa gaacggaaga aggccaatga 181 agtggaccgc atggtactag taggagatgt gaaggatcgt gtggctatac ttgtggatga 241 catggctgac acttgtggta caatttgtca tgctgctgac aagtgagtac agggtagggg 301 gcagtattta gaaatagcta aactaatgct ttactgattc cttttgaaac acagctgaag 361 ggggaaatag ctttgggata ttttgatcat gctagcttta agtgcatata aagtgttaat 421 aagtgtttct catttcagat tcttaatttt tataaacaga cactgctttt acatacaggg 481 tatccttaat aagttagcaa aagttaagtc cgtcacatgc gctttacctt tcaaaagccc 541 ttacttagta acacaatctc ccatggactg ggctgtctcc cctcacaatc acatggctgc 601 ctggaagctg tgctgagaca gtattttgat tgcatattga atgctagacc agagaaagat 661 caaaattcta cacctgcttt ctactgaata catagtatgt tcctgtcatt agaaagtcaa 721 aatcgtaagt tcaggtaaag caggtaaagt ttgccctttt aaccatctaa ttcaatgaca 781 ttaattatat ttacactgct cactttttgt tttgatgagt taggaatccc tagatatccc 841 ttacatatat ttatttattt tgtatgtgtc atatgtgcat atgccatggc aagcatgc // LOCUS RATPRPS6 938 bp ds-DNA ROD 22-JAN-1990 DEFINITION Rat phosphoribosylpyrophosphate synthetase (PRPS1) gene, exon 6. ACCESSION M31083 J05251 KEYWORDS phosphoribosylpyrophosphate synthetase. SEGMENT 6 of 7 SOURCE Rat (Sprague-Dawley) liver DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 938) AUTHORS Shimada,H., Taira,M., Yamada,K., Iizasa,T. and Tatibana,M. TITLE Structure of the rat PRPS1 gene encoding phosphoribosylpyrophosphate synthetase subunit I JOURNAL J. Biol. Chem. 265, 3956-3960 (1990) STANDARD full staff_entry COMMENT Draft entry and computer readable sequence for [1] kindly provided by M.Tatibana, 03-JAN-1990 FEATURES from to/span description pept + 627 + 786 phosphoribosylpyrophosphate synthetase, exon 6 pre-msg < 1 > 938 PRSP1 mRNA and introns IVS < 1 626 PRPS1 intron E IVS 787 > 938 PRPS1 intron F BASE COUNT 257 a 185 c 185 g 311 t ORIGIN About 1.2 kb after segment 5. 1 gcatgcggaa gtcagaggac aactttgaaa ctggctctct tcttctaccc tgtgggtccc 61 agggatcaaa tttaggtcag caggctgagc agcaagcaca aagtattctg attaatctta 121 ctttcagggt taagctttca gtcttgtggt accatacatg tttttatcat atagttttcc 181 agatcgtatt gaagagcatt tctctttttg ccatccagaa agaagacaca gattacccct 241 gggaattttt ttataggttc tagcacaata aggcttagtg taggctttat tctttaatga 301 gtccagaact gtgtccccca aaattcatgt tgacttctag ccccaggtgt gattttgtgg 361 gttcacctgg aggggtaggt atttagactt aaatagtgag atcttgagag cacaaccctc 421 atgataggat tagtgacctt attagaagaa aatgcttgat acactattta cacatatact 481 agaaggccct gtgagatact tgatcttagc cttgtttgtg aaacaaactt gtctgtgata 541 ttgctatgac aaattaatac tcttccttct tcctaattca gattctgtat ttaaatgtca 601 gattaatcag atcttttttc ctccagactt ctctcagctg gagctaccag agtttatgcc 661 attttgacgc atgggatctt ttctggtcca gccatttctc gcatcaacaa tgcatgcttt 721 gaagcagtag tagttaccaa taccatacct caggaggaca agatgaaaca ctgctccaaa 781 atccaggtga gatgacattg ctgcaaaagc acatttccat taagtgtttc gatgatgata 841 tgtcaatact gaagcttaac ttctttgggt tttcctttgt tttgttctgg gaatggaacc 901 caaagtcttc tttctgtagg taagatatag tctcaaaa // LOCUS RATPRPS7 1322 bp ds-DNA ROD 22-JAN-1990 DEFINITION Rat phosphoribosylpyrophosphate synthetase (PRPS1) gene, exon 7. ACCESSION M31084 J05251 KEYWORDS phosphoribosylpyrophosphate synthetase. SEGMENT 7 of 7 SOURCE Rat (Sprague-Dawley) liver DNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 1322) AUTHORS Shimada,H., Taira,M., Yamada,K., Iizasa,T. and Tatibana,M. TITLE Structure of the rat PRPS1 gene encoding phosphoribosylpyrophosphate synthetase subunit I JOURNAL J. Biol. Chem. 265, 3956-3960 (1990) STANDARD full staff_entry COMMENT Draft entry and computer readable sequence for [1] kindly provided by M.Tatibana, 03-JAN-1990 FEATURES from to/span description pept + 116 208 phosphoribosylpyrophosphate synthetase, exon 7 pre-msg < 1 1121 PRSP1 mRNA and introns IVS < 1 115 PRPS1 intron F BASE COUNT 318 a 277 c 266 g 461 t ORIGIN About 1.4 kb after segment 6. 1 tgagtgctag atccttagtt aggtttgctt tccaggctgc tcatataggc tgcagagagg 61 cccatggact ctgttcttgc atactctaac ctcgtgcatt tttttgcctc tctaggtgat 121 cgacatctct atgatccttg cagaagccat caggagaacc cacaatggag aatctgtctc 181 ctacctgttc agccatgttc ctctataata tcataaattc tgaagcgttt tcaaaatgaa 241 accaccccca ccccttgttt ttcttgtatt tggtgagttg ggcagaagag ccagcttgct 301 tcagtgtagc tttttacagc ccacattagc tacattagga tttatcctaa ttggagaaag 361 acagactgct attaactgct aggacaccct acgtgcattg ttgcagcctg gctttcttgt 421 ttattttgtg atccttgcag ctttaaattg agttccactg ttgaaagctg catagactgt 481 taaaagagag agtattcccc aaggtcctta ggatggaatt gtggagctca tactccattg 541 catgtgaagg ctttggagtt tccttcattc agaataacta gcgacaaagc cagccctcgt 601 gtgatacatt ttcagaggtg tatgctacac tgcagcaagt tccctgtgca tccttaaaca 661 gagttcgcct gctgagcacc ctgtacggca ggggcgggta gctcaatgca gtaatcaatt 721 tttgggagga agaagcctga tctattatca tctgtttaat tctctgtagc ttggattctc 781 tatgcctatt cctttcctgt tggcttcacc ttcagctatc tcgacccttt cctggacaaa 841 tatcttgaac tcagtgatca ttgtttgtga caaaattttc tgtaagacag acttgcttct 901 tgctatgtaa ctgctaacgt tgacattagg taacttgcta tagcacaatc ttccttagcc 961 cgctctctct gagttagtgg gttttaggtg gtgtgtgtgt cgtagtgcct tttgattaat 1021 ttaagtattt aatttttatc ttccttcgat ctgtttggct taacaatttg atcttattgt 1081 ctcatgtaga agaaacttaa taaaatgtct gtcatgtgta caattttggg tgtgctgtct 1141 tatctgctga tttccccact gacatttgtc ttaggtgttt tttctttctt tcccaaccat 1201 tttagccacc ttaagagaaa gcaagactaa agtatccgag gtttagtgag aattagaact 1261 aattaattct gtatagtata cttgaattat atgaagcata attaatgcct tctgggtttc 1321 tg //