Path: utzoo!attcan!uunet!mailrus!iuvax!bionet!haploid!jeh From: jeh@haploid (Jamie Hayden) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003221742.AA21851@haploid.LANL.GOV> Date: 22 Mar 90 17:42:12 GMT Sender: daemon@genbank.BIO.NET Lines: 261 Approved: lear@genbank.bio.net LOCUS GPIFIXA 855 bp ss-mRNA ROD 25-JUL-1989 DEFINITION Guinea pig factor IX mRNA, partial cds. ACCESSION M26237 KEYWORDS factor IX. SOURCE Guinea pig liver, cDNA to mRNA. ORGANISM Cavia porcellus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Caviidae; Caviinae. REFERENCE 1 (bases 1 to 855) AUTHORS Sarkar,G., Koeberl,D.D. and Sommer,S.S. TITLE Direct sequencing of the activation peptide and the catalytic domain of the factor IX gene in six species JOURNAL Genomics 6, 133-143 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly provided by G.Sarkar, 18-JUL-1989. FEATURES from to/span description pept < 1 > 855 factor IX (AA at 1) BASE COUNT 257 a 164 c 203 g 231 t ORIGIN Chromosome X. 1 agagtttcta ttccatccgt gtctaaggag cacaaccgtg ctaatgctat tttttctcgt 61 atgggctatg taaattttac tgatgatgaa accatttggg atgataatga tgatgatgaa 121 accatttggg ataacagcac tgaaagcacc aagccatctg atgagttttt tcgggttgtt 181 ggtggagaag atgccaaacc aggtcaattc ccttggcagg tccttttgaa tggtgaaact 241 gaagcattct gtggaggttc catcgtgaat gaaaaatgga tcgtaacagc tgcccactgt 301 attctccctg gtattaaaat tgaggttgtt gcaggtaaac ataatattga aaagaaggaa 361 gatacagagc aaaggcgaaa tgtgacacag attattctgc accatagtta caatgcaagc 421 tttaataaat acagccacga cattgccctt ctggagctgg acaaaccctt atcactgaac 481 agctacgtaa cacctatttg cattgccaac agggaataca caaacatctt cctcaaattt 541 ggagctggct atgtgagtgg ctggggaaaa ctattcagtc aagggagaac cgcttcaatt 601 cttcagtacc ttagagttcc acttgtggac cgagccacgt gtcttcggtc cacgaaattc 661 accatctata ataacatgtt ctgtgctgga ttccatgagg gaggcagaga ttcgtgtcaa 721 ggagacagtg ggggtcccca tgtgactgaa gtggaaggga ccaattttct aactggaatt 781 attagctggg gtgaagaatg cgcaatgaaa ggcaaatatg gaatatatac caaagtatct 841 cggtatgtca actgg // LOCUS MUSFIXA 852 bp ss-mRNA ROD 25-JUL-1989 DEFINITION Mouse factor IX mRNA, partial cds. ACCESSION M26236 KEYWORDS factor IX. SOURCE Mouse liver, cDNA to mRNA. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 852) AUTHORS Sarkar,G., Koeberl,D.D. and Sommer,S.S. TITLE Direct sequencing of the activation peptide and the catalytic domain of the factor IX gene in six species JOURNAL Genomics 6, 133-143 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly provided by G.Sarkar, 18-JUL-1989. FEATURES from to/span description pept < 1 > 852 factor IX (AA at 1) BASE COUNT 270 a 153 c 192 g 237 t ORIGIN Chromosome X. 1 agagcttcta tttcatacag ttctaaaaag atcacgagag ctgagactgt tttctctaat 61 atggactatg aaaattctac tgaagctgta ttcattcaag atgacatcac tgatggtgcc 121 attcttaata acgtcactga aagtagtgaa tcacttaatg acttcactcg agttgttggt 181 ggagaaaacg caaaaccggg tcaaatccct tggcaggtca ttttaaatgg tgaaattgag 241 gcattctgtg gaggtgccat cattaatgaa aaatggattg taactgctgc ccactgtctt 301 aaacctggtg ataaaattga ggttgttgct ggtgaatata acattgataa gaaggaagac 361 acagaacaaa ggagaaatgt gattcgaact atccctcatc accagtacaa tgcaactatt 421 aataagtata gtcatgacat tgccttgctg gaactggata aacctttaat actaaacagc 481 tatgtaacac ctatctgtgt tgccaatagg gaatatacaa atatcttcct caagtttggt 541 tctggctatg tcagtggctg gggaaaagtc ttcaacaaag ggagacaggc ttccattctt 601 cagtacctta gagttccact ggtggataga gccacatgcc ttaggtccac aacattcact 661 atctataaca acatgttctg tgcaggctac cgtgaaggag gcaaagattc gtgtgaagga 721 gatagtgggg gaccccatgt tactgaagta gaagggacaa gtttcttaac tggcattatt 781 agctggggtg aagaatgtgc aatgaaaggc aaatatggaa tatatactaa ggtttcccgg 841 tacgtcaact gg // LOCUS PIGFIXA 813 bp ss-mRNA MAM 25-JUL-1989 DEFINITION Pig factor IX mRNA, partial cds. ACCESSION M26235 KEYWORDS factor IX. SOURCE Pig liver, cDNA to mRNA. ORGANISM Sus scrofa Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Suiformes; Suidae. REFERENCE 1 (bases 1 to 813) AUTHORS Sarkar,G., Koeberl,D.D. and Sommer,S.S. TITLE Direct sequencing of the activation peptide and the catalytic domain of the factor IX gene in six species JOURNAL Genomics 6, 133-143 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly provided by G.Sarkar, 18-JUL-1989. FEATURES from to/span description pept < 1 > 813 factor IX (AA at 1) BASE COUNT 221 a 191 c 201 g 200 t ORIGIN Chromosome X. 1 tcacacagtc ctacgacgct cacccgtgct gagattattt tttccaacat ggactatgaa 61 aattctactg aagttgaacc aattttggat agcctcactg aaagcaacca atcatctgac 121 gactttattc gaattgttgg tggagaaaac gccaaaccag gtcaattccc ttggcaggtc 181 cttctgaatg gtaaaattga tgcattctgt ggcggttcca tcattaatga aaagtgggtt 241 gtaacggcag cccactgcat cgaacctggt gttaaaatta ctgtcgttgc aggtgagtat 301 aacaccgagg agacagaacc tacagagcaa aggcgaaatg tgatccgtgc cattccccac 361 cacagctaca atgccaccgt gaataagtac agccatgaca ttgccctcct ggaactggat 421 gaacccttga cgctgaacag ctacgtaacc cctatttgca ttgccgacaa ggagtacacc 481 aacatcttcc tcaaatttgg atctggctat gtgagtggct gggggagagt cttcaacaga 541 gggcggtcgg ctacgattct tcagtacctg aaggttccac tcgtggaccg agctacctgc 601 ctccggtcca cgaaggtcac catctatagt aacatgttct gtgccggctt ccatgaggga 661 ggtaaagatt cctgcctagg agatagcggg ggcccccatg ttaccgaggt ggaaggtacc 721 agtttcttaa ctggaattat tagctggggt gaagagtgtg cagtgaaggg aaaatatgga 781 atatatacca aggtatcccg gtatgtcaac tgg // LOCUS RABFIXA 825 bp ss-mRNA MAM 25-JUL-1989 DEFINITION Rabbit factor IX mRNA, partial cds. ACCESSION M26234 KEYWORDS factor IX. SOURCE Rabbit liver, cDNA to mRNA. ORGANISM Oryctolagus cuniculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Lagomorpha; Leporidae. REFERENCE 1 (bases 1 to 825) AUTHORS Sarkar,G., Koeberl,D.D. and Sommer,S.S. TITLE Direct sequencing of the activation peptide and the catalytic domain of the factor IX gene in six species JOURNAL Genomics 6, 133-143 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly provided by G.Sarkar, 18-JUL-1989. FEATURES from to/span description pept < 1 > 825 factor IX (AA at 1) BASE COUNT 255 a 159 c 187 g 224 t ORIGIN Chromosome X. 1 ggagtttctg tttcacatgc ttctaagaaa atcacccgtg ctacgacaat tttttccaat 61 acggagtatg aaaattttac tgaagctgaa accattcggg gtaatgtcac tcaaagatcc 121 caatcatctg atgacttcac tcggattgtt ggtggagaaa atgcaaaacc gggtcaattt 181 ccgtggcagg tccttctgaa tggcaaagtt gaggcgttct gtggaggttc tatcattaat 241 gaaaaatggg tcgtaactgc agcccactgt atcaaaccgg atgataatat tacagttgtt 301 gcaggtgaat ataacattca ggagactgag aatacagagc aaaagcgaaa tgtgattcga 361 attattcctt accacaaata caatgcaact atcaataagt acaaccatga cattgccctt 421 ctggaactgg ataaaccctt aacgctaaac agctatgtaa cacctatttg cattgccaac 481 agagaataca caaacatctt cctcaacttt ggatctggct atgtgagtgg ctggggcaga 541 gtcttcaaca gagggagaca agcttcaatt cttcagtacc ttagagttcc atttgttgac 601 cgagccacat gccttcggtc cacaaaattc accatctata ataacatgtt ctgtgctggt 661 tttgatgtgg gaggtaaaga ttcatgtgaa ggagacagtg gagggcccca tgtgacagaa 721 gtggaaggaa ccagtttctt aactggaatt attagctggg gtgaagaatg tgcaattaaa 781 gggaaatatg gagtatatac cagggtatcc tggtatgtca actgg // LOCUS RATFIXA 846 bp ss-mRNA ROD 25-JUL-1989 DEFINITION Rat factor IX mRNA, partial cds. ACCESSION M26247 KEYWORDS factor IX. SOURCE R.norvegicus liver, cDNA to mRNA. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 846) AUTHORS Sarkar,G., Koeberl,D.D. and Sommer,S.S. TITLE Direct sequencing of the activation peptide and the catalytic domain of the factor IX gene in six species JOURNAL Genomics 6, 133-143 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly provided by G.Sarkar, 18-JUL-1989. FEATURES from to/span description pept < 1 > 846 factor IX (AA at 1) BASE COUNT 269 a 157 c 188 g 232 t ORIGIN Chromosome X. 1 agagtttctg ttgcctacaa ttctaaaaag atcacccgtg ctgagactgt tttttctaat 61 accgactatg gaaattccac tgaattaatc ctggatgaca tcaccaacag caccattctt 121 gataacctca ctgaaaatag tgaaccaatt aatgacttca ctcgagttgt tggtggagaa 181 aatgcgaaac caggtcaaat cccttggcag gtcattctaa atggtgaaat tgaggcattc 241 tgtggaggcg ccatcattaa tgaaaaatgg attgtaactg ctgcccactg tcttaaacct 301 ggtgataaaa ttgaggttgt tgctggtgaa cataatattg atgagaagga agacacagaa 361 caaaggagaa atgtgattcg aactatccct catcaccagt acaatgcaac tattaataag 421 tatagtcatg acattgcctt gctggaactg gataaacctt taatactaaa cagctatgta 481 acacctatct gtgttgccaa taaggaatat acaaatatct tcctcaagtt tggttctggt 541 tatgtgagtg gctgggggaa agtcttcaac aaagggagac aggcttccat tcttcagtac 601 cttagagttc cactggttga ccgagccaca tgccttaggt ccacaaaatt cagcatctat 661 aacaacatgt tctgtgcagg ttaccgtgaa ggaggcaaag attcatgtga aggagatagt 721 gggggacccc atgttactga agtagaaggg acaagtttct taactggcat tattagctgg 781 ggtgaagaat gtgcaatgaa aggcaaatat ggaatatata ctaaggtttc caggtatgtc 841 aactgg // LOCUS RATL1IGHA 1206 bp ds-DNA ROD 04-JAN-1990 DEFINITION Rat LINE (L1) element insertion in immunoglobulin heavy chain locus. ACCESSION X15742 KEYWORDS L1 element insertion. SOURCE Rat DNA. ORGANISM Rattus sp. Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 1146) AUTHORS Usdin,K. and Furano,A.V. JOURNAL Unpublished (1989) NIH, Blg 8, Rm 202, Bethesda, MD 20892 STANDARD full staff_review REFERENCE 2 (bases 181 to 260; 628 to 657; 920 to 999; 1147 to 1206) AUTHORS Usdin,K. and Furano,A.V. TITLE Insertion of L1 elements into sites that can form non-B DNA: Interactions of non-B DNA-forming sequences JOURNAL J. Biol. Chem. 264, 20736-20743 (1989) STANDARD full staff_review COMMENT Computer-readable sequence for [1] kindly submitted by K.Usdin, 06-JUL-1989. FEATURES from to/span description site 229 229 site of L1 element insertion site 1147 1201 major polypurine:polypyrimidine sequence BASE COUNT 291 a 294 c 268 g 257 t 96 others ORIGIN 1 ggatcctggg acatagtcac ctcttctgct catcctacca catctatgcc ccctagatgc 61 ttacttactg gagtcttttg cctagcctgg ggaaacaaac gtctatattc cttaagcacc 121 tactgctgac ctgtaaggcc cagcttcgaa ccaactcaca taagtgaata tggactgtcc 181 cctgtcttgg gatggccccc tgggtcatga gaagaccact gccaaagaac cttctcttag 241 cgcactgaac ccctcccctg tacaacaaat gacagagctg agaccccctg ctgataacca 301 aagttctggc agtgaccagg agtggacaca tccaccttgg gcacaggaaa cacagcccca 361 gagatgtttc cccatcacga cagcagagtg acattttaga ctttaattta ggtcactttt 421 ttctgctgta gagaaagcaa agagcagtct gagtgcctga caggccccca ggtgcactat 481 agatggacac acacggagga taagatccac ctttatggct acccagggag gggcactgcc 541 accaccaccc tcacagactt ttctcatagt tgagaaacaa ctcagataca agtgaatgac 601 agatggacct ctatctgctc ttattttaaa aagaagaaaa gccccccccc cgccccagct 661 ccagaacttt ccgttttgag aaaaatcact ggtccctgac caaagagatg attggcagtt 721 tgggagcctg gatatccata ctctgcgcct agtgtgaggt ttgagaccca gagtccctgt 781 ggtctgtgac tggtaggtgg ttttgactaa gcgaagcatc acagtgctaa ctgggagcac 841 agtgacttgt ggctcaacaa aaaccttctg tttgcagctt ttcaggggca gcctgagcta 901 tgaggaagta gaggggcttg agaaagccgg ggaagaaaag agcggacctg agaggaaagg 961 gagctttctg gagggcagga gacagtgcag aggagaacaa cgtgctgtgg acaagtcctg 1021 agtggggaaa ggatgagcaa acataggcat nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1141 nnnnnnctcc ctcactcctt tccttgctcc ttctcctgtt tccttctcct cttccctctt 1201 tacagg // LOCUS SHPFIXA 823 bp ss-mRNA MAM 25-JUL-1989 DEFINITION Sheep factor IX mRNA, partial cds. ACCESSION M26233 KEYWORDS factor IX. SOURCE Sheep liver, cDNA to mRNA. ORGANISM Ovis aries Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae. REFERENCE 1 (bases 1 to 823) AUTHORS Sarkar,G., Koeberl,D.D. and Sommer,S.S. TITLE Direct sequencing of the activation peptide and the catalytic domain of the factor IX gene in six species JOURNAL Genomics 6, 133-143 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly provided by G.Sarkar, 18-JUL-1989. FEATURES from to/span description pept < 1 > 823 factor IX (AA at 1) BASE COUNT 233 a 174 c 194 g 222 t ORIGIN Chromosome X. 1 cgagcctctg tcttacatac ttctaagaag ctcacccgtg ctgagactat tttttccaat 61 atgaactatg aaaattcttc tgaagctgaa ataatttggg ataacgtcac tcaaagcaat 121 caatcattcg atgacttcaa tcgtgtggtt ggtggcgaag atgctgcaag aggtcaattc 181 ccttggcagg tccttttgca tggtgaaatt gctgcattct gtggaggttc catcgttaat 241 gaaaaatggg ttgtaactgc tgcccactgc atcaagcctg gtgttaaaat tactgttgtt 301 gcaggtgaac ataacactga gaagccagaa cctacagagc aaaagcgaaa tgtgatccgt 361 gctattcctt accacggtta caatgcatct attaataagt acagccacga cattgccctc 421 ctggagctgg atgaaccctt agagctaaat agctatgtaa cccctatttg cattgctgac 481 agggaataca cgaacatctt cctcaaattt ggttacggtt atgtgagtgg ctggggaaga 541 gtcttcaaca gagggaggtc agcctcaatt cttcagtacc tgaaagttcc acttgttgac 601 cgagccacgt gtcttcgatc cacaaagttc accatctaca atcacatgtt ctgtgccggc 661 taccatgagg gaggtaaaga ttcatgccaa ggagacagtg ggggacccca tgttaccgaa 721 gtggaaggta ccagtttctt aactggaatt attagctggg gtgaagagtg tgcaatgaaa 781 ggaaaatatg gcatatatac caaggtgtcc cggtatgagg tca //