Path: utzoo!attcan!uunet!bionet!life!mia From: mia@life (Mia McLeod) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003161728.AA10064@life.LANL.GOV> Date: 16 Mar 90 17:28:36 GMT Sender: daemon@genbank.BIO.NET Lines: 112 LOCUS HUMTCBDA 100 bp ds-DNA PRI 22-JAN-1990 DEFINITION Human T-cell receptor germline beta-chain gene D2.1 exon. ACCESSION M31348 KEYWORDS T-cell receptor; diversity exon; germline. SOURCE Human T-cell line HPB-ALL DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 100) AUTHORS Ikuta,K., Ogura,T., Shimizu,A. and Honjo,T. TITLE A joining-diversity-joining complex generated by inversion mechanism and a variable-diversity complex in the beta-chain gene of the human T-cell receptor JOURNAL Nucleic Acids Res. 14, 4899-4909 (1986) STANDARD simple staff_review FEATURES from to/span description pept / 47 / 62 T-cell receptor beta chain D2.1 exon (AA at 48) /nomgen="TCRB" /map="7q35" /hgml_locus_uid="LP0151Q" BASE COUNT 25 a 33 c 13 g 29 t ORIGIN 1 catcagggtt ttttgtaaaa gcacctcctc tacctgaatc atcgtgccct cccgctagtc 61 cccacaatgt tacaccatga tacaaaaatg tttcctccct // LOCUS HUMTCBJE 110 bp ds-DNA PRI 22-JAN-1990 DEFINITION Human T-cell receptor germline beta-chain gene J2.1 exon. ACCESSION M31346 KEYWORDS T-cell receptor; germline; joining exon. SOURCE Human T-cell line HPB-ALL DNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 110) AUTHORS Ikuta,K., Ogura,T., Shimizu,A. and Honjo,T. TITLE A joining-diversity-joining complex generated by inversion mechanism and a variable-diversity complex in the beta-chain gene of the human T-cell receptor JOURNAL Nucleic Acids Res. 14, 4899-4909 (1986) STANDARD simple staff_review FEATURES from to/span description pept / 52 / 101 T-cell receptor J2.1 exon (AA at 53) /nomgen="TCRB" /map="7q35" /hgml_locus_uid="LP0151Q" IVS 102 > 110 TCR-beta, J-C intron BASE COUNT 26 a 26 c 38 g 20 t ORIGIN 1 taagggaggt ggggaaggag aaggaattct gggcagcccc ttcccactgt gctcctacaa 61 tgagcagttc ttcgggccag ggacacggct caccgtgcta ggtaagaagg // LOCUS HUMTCBZD 110 bp ds-DNA PRI 22-JAN-1990 DEFINITION Human T-cell receptor unproductively rearranged beta chain gene, J1.5-D1.1-J2.1 region. ACCESSION M31345 KEYWORDS T-cell receptor; diversity exon; processed gene; variable region. SOURCE Human T-cell line HPB-ALL DNA, clone lambda-HPB-1. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 110) AUTHORS Ikuta,K., Ogura,T., Shimizu,A. and Honjo,T. TITLE A joining-diversity-joining complex generated by inversion mechanism and a variable-diversity complex in the beta-chain gene of the human T-cell receptor JOURNAL Nucleic Acids Res. 14, 4899-4909 (1986) STANDARD simple staff_review FEATURES from to/span description pept / 10 / 101 T-cell receptor beta chain J-D-J region (AA at 10) /nomgen="TCRB" /map="7q35" /hgml_locus_uid="LP0151Q" recomb 54 55 J1.5-region DNA end/unknown DNA start recomb 55 56 unknown DNA end/D1.1-region DNA start recomb 66 67 D1.1-region DNA end/J2.1-region DNA start IVS 102 > 110 TCR-beta, J-C intron BASE COUNT 26 a 29 c 34 g 21 t ORIGIN 1 gcaacttacc taggatggag agtcgagtcc catcaccaaa atgctggggc tgatagcccg 61 atgtccgttc ttcgggccag ggacacggct caccgtgcta ggtaagaagg // LOCUS HUMTCBZE 500 bp ds-DNA PRI 22-JAN-1990 DEFINITION Human T-cell receptor unproductively rearranged beta chain gene V-region. ACCESSION M31347 KEYWORDS T-cell receptor; processed gene; pseudogene; variable region. SOURCE Human T-cell line HPB-ALL DNA, clone lambda HPB-2. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 500) AUTHORS Ikuta,K., Ogura,T., Shimizu,A. and Honjo,T. TITLE A joining-diversity-joining complex generated by inversion mechanism and a variable-diversity complex in the beta-chain gene of the human T-cell receptor JOURNAL Nucleic Acids Res. 14, 4899-4909 (1986) STANDARD simple staff_review FEATURES from to/span description pept.ps 24 72 T-cell receptor beta chain V-region, exon 1 /nomgen="TCRB" /map="7q35" /hgml_locus_uid="LP0151Q" 161 / 449 T-cell receptor beta chain V-region, exon 2 IVS 73 160 TCR-beta, intron A BASE COUNT 104 a 140 c 131 g 125 t ORIGIN 1 ccctccatcc tcgagttcct gccatgagcc tcgggctcct gtgctgtggg gccttttctc 61 tcctgtgggc aggtgggtcc tgcgggggcc ccttgtgtgg atttcaaggc ccatcccctt 121 tccactggag ctgtagcatc agctttgtcc ttctctgcag gtccagtgaa tgctggtgtc 181 actcagaccc caaaattccg ggtcctgaag acaggacaga gcatgacact gctgtgtgcc 241 caggatatga accatgaata catgtactgg tatcgacaag acccaggcat gggctgaggc 301 tgattcatta ctcagttggt gagggtacaa ctgccaaagg agaggtccct gatggctaca 361 atgtctccag attaaaaaaa cagaatttcc tgctggggtt ggagtcggct gctccctccc 421 aaacatctgt gtacttctgt gccagcagcc ctggacccgg taccaggggt tacaccatga 481 tacaaaaatg tttcctccct //