Path: utzoo!attcan!uunet!bionet!life!mia From: mia@life (Mia McLeod) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003162012.AA05395@life.LANL.GOV> Date: 16 Mar 90 20:12:14 GMT Sender: daemon@genbank.BIO.NET Lines: 192 LOCUS OLVCG 9256 bp ds-DNA VRL 29-JAN-1990 DEFINITION Ovine lentivirus (SA-OMVV), complete genome. ACCESSION M31646 KEYWORDS complete genome; envelope glycoprotein; gag protein; pol protein; reverse transcriptase; tat protein. SOURCE Ovine lentivirus proviral DNA, clones SA-320, SA-83, and SA-72. ORGANISM Ovine lentivirus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 9256) AUTHORS Querat,G., Audoly,G., Sonigo,P. and Vigne,R. TITLE Nucleotide sequence analysis of SA-OMVV, a Visna related ovine lentivirus: Phylogenetic history of lentiviruses JOURNAL Virology (1990) In press STANDARD full staff_review COMMENT Draft entry and computer-readable sequence [1] kindly submitted by G.Querat, 29-JAN-1990. FEATURES from to/span description pept 520 1860 gag polyprotein precursor pept < 1791 5051 pol polyprotein precursor (AA at 1791) pept 5008 5694 Q protein pept 5698 5982 tat protein pept 5996 8968 env polyprotein pept 5996 6137 rev protein, exon 2 (first expressed exon) 8588 8880 rev protein, exon 3 ORF 5484 5744 W protein IVS 6138 8587 rev protein intron B LTR < 1 152 5' LTR LTR 8910 9256 3' LTR binding 153 169 primer (Lys-tRNA) binding site binding 9108 9115 put. AP1-like binding site binding 9120 9126 put. AP1-like binding site signal 9152 9158 TATA box signal 9237 9242 poly-A signal BASE COUNT 3520 a 1415 c 2343 g 1978 t ORIGIN 1 ggagagatca gagcactctt gggagtggaa gctcccgggt ctctcctgcc tgactgtgga 61 gacaataaag gagttacttt acaactgcgc tagcctggtt attatcggga ttcgtcacta 121 attctgtgca acaccagagc ggatctcgca gctggcgccc aacgtggggc tcgagaaaag 181 aagacagcag tccgcagaaa tcaggagaag aagagtcatg gaaggagtta tgggacctcg 241 gactttgctg ttgtaaagag aaaccagcgc gcagcggaag agcggagaca cggacaaaag 301 ggaaacaaaa acttcgggga cgcctgaagt aaggtaagag agacacctac tgggaaaagt 361 agggaaatac ccttcacagg acgaaaaggc gctgctgggg gacaggagga gggttcgcag 421 ccctgagact taaagaaggg gacgagccct ccgcctgaac ctgaggagtg caaaggcagc 481 gctagtaaga aaaccgccgt ggtgaatcta gatagagaca tggcgacgca aggctcaaag 541 gagaagaagg gataccctga gctcaaagag gtcattaaga caacatgtaa aataaaggtg 601 gggcccggga aggagacctt gacagaaggg aactgtctat gggccttaaa aaccctagac 661 tttatatttg aggatataaa aacggagccg tggactctta caaaaatgta tacagtctgg 721 gaaaaattaa agcaagtaac tccagaagaa acaagtaaaa gagagtttgc ctccttacag 781 gccacattgg cttgtataat gtgtagtcaa atgggcatga ggcccgagac agtgcaggca 841 gccaggggaa taataagtat gaaagaaggg ctacacgaaa aacaggagga taaagaaaag 901 aaggtagaac aactctaccc aaacttggaa aaacacagag aagtgtatcc tattgtaaat 961 ttgcaggctg gagggagaag ttggaaagcg gtagagtcag tgacattcca gcagctgcaa 1021 acagtagcaa tgcagcatgg acttgtgtcc gaggattttg aaagacaatt agcatattat 1081 gccactacat ggacaagcaa agatatatta gaagtactag ccatgatgcc tggaaatagg 1141 gcgcaaaaag agttaataca ggggaaatta aatgaggaag cagaaaggtg ggtaaggcag 1201 aatcccccag ggccaaatgt ccttactgtg gatcagatta tgggagtcgg acaaacaaat 1261 caacaggcat cgcaagctaa tatggatcag gcaagacagc tttgcttgca gtgggtaata 1321 acagccttga gatcagtaag acatatgtca cacagaccag gaaatcctat gctgataaaa 1381 caaaagaata gtgaaagtta tgaagatttt atagcaagat tgctagaagc aattgataca 1441 gaacccgtca cggatcctat aaaaacatat ttaaaagtaa ctctgtcgtt cacaaatgct 1501 agcacagatt gtcaaaaaca aatggacaga gtgttaggga caagagtcca acaggcatca 1561 gtagaagaaa aaatgcaagc atgtcgggac gtaggatcag aaggatttaa aatgcagctg 1621 ttagcacagg cattgagacc gccacggaag gaaggaaaac agggagtaca aaaatgctat 1681 tactgcggga aaccaggaca tctcgcaagg caatgcagac aaggaataat atgtcatcat 1741 tgtgggaaaa gaggacatat gcaaaaagat tgcagacaaa agaaaggtaa tccaacatca 1801 cagcagggaa acagcaggag ggggccacgt gtggtgccgt ccgcgccccc tatgttgtaa 1861 cagaagcacc accaaagata gatataaagg tagggacaaa ttggaaaaag gtattagtag 1921 atactggggc agatagaact atagtaagat atcatgacaa ttcgggaata cccacaggga 1981 gaataaaact acaagggata ggaggaataa tagaaggaga aaaatgggat aaagtagtaa 2041 tacaatataa agaaaaaaga atagaaggga caatagtggt actgcccagt agtccagtag 2101 aggtattagg aagggataat atggcaaaat tagacatagg aataattatg gcaaatttag 2161 aagaaaagaa aattcccatt acacaggtaa aattaaaaga aggctgtaag ggtcctcata 2221 tagcacaatg gcctttaact caagaaaaat tagaaggctt aaaagaaata gtggacaagt 2281 tagaaaagga aggaaaggta ggtagagcgc cgccacattg gacatgtaat actcctatat 2341 tttgcatcaa gaaaaaatca gggaaatgga gaatgttaat agattttagg gaattaaata 2401 agcaaacaga agatttggcg gaggcacaat taggtttgcc gcatccaggg ggattacaga 2461 aaaagaagca tgtaacaata cttgacatag gggatgcata ttttacaata ccattgtatg 2521 agccatatag accatataca tgttttacca tgttaagtcc aaataatttg ggaccatgta 2581 cacggtatta ttggaaagta ctaccacaag gatggaagtt gagtccctca gtgtatcaat 2641 ttacaatgca agaaatatta agggattgga tagcgaaaca tcctatgata caatttggaa 2701 tatacatgga tgatatttat atagggagtg atttggatat aatgaaacac agagagatag 2761 tagaagaact agctagctat attgcccagt atggatttat gttaccagaa gaaaagagac 2821 aagaagggta tccagcaaag tggcttggat ttgaattgca cccagagaaa tggagatttc 2881 agaaacatac acttccagaa ataaaggaag ggaccataac attaaataaa ttacaaaaat 2941 tagtaggaga tttagtctgg agacaatcat taataggaaa aagcatacct aatatactaa 3001 agttaatgga aggggatagg gcgctccaaa gtgaaagaag gatagagctc agacatgtaa 3061 aggaatggga ggaatgtaga agaaaattag cagaaatgga aggaaattac tatgatgaag 3121 agaaggatgt atatggacaa atagattggg gagataaggc aatagagtac atagtgtttc 3181 aagagagagg aaaaccttta tgggtaaatg tagtacataa tattaaaaac ctcagtcaat 3241 cacagcaaat tattaaagca gcacaaaaac ttacgcaaga ggtaataata aggataggaa 3301 aaataccatg gatactatta ccaggaaagg aggaagattg gatcttagag ttgcaaatag 3361 gaaatataac atggatgccc tcattttggt cgtgttatag ggggtcaata aggtggaaaa 3421 agagaaatgt aataacagaa gtagtagaag gcccgacata ttatacagat ggaggtaaga 3481 agaatggaaa aggaagtcta ggattcattg cctctacagg cgttaaattt agaaaacacg 3541 aagagggaac aaatcaacaa ttagaattaa gagcaataga agaggcgtgc aaacagggac 3601 cagagaaaat gaatatagta acagatagca gatatgcata tgaatttatg agaagaaatt 3661 gggatgaaga agttataaag aacccaatac aggctagaat tatgaaatta gtgcatgata 3721 aggaacagat aggggtacat tgggtacctg gacacaaagg aattcctcaa aatgaagaaa 3781 tagataaata tatttcagaa atatttttag caagagaagg aagcggaatt cttccaaaaa 3841 gagcggaaga tgcagggtat gatctcatat gtccgcagga agtgtgtatt ccagcggggc 3901 aagtaagaaa aattccaatt aatctaagaa taaacttaaa ggaggatcag tgggccatgg 3961 tagggacgaa aagtagtttt gcaagcaagg gagtatttgt acaaggggga ataatagatt 4021 caggatatca aggcattata caggtagtag tatataacag caatgacaag gaagtcatta 4081 tcccacaagg gagaaaattt gcacaattaa ttctcatgcc tttaatacat gaagacctag 4141 aagcttgggg ggaaactaga aggacagaaa gaggaaacca aggatttgga tcaacgggag 4201 catattggat tgaaaatatt cccctagcag aggaagatca cagtaaatgg catcaagatg 4261 ctgggtcatt acacttagac tttgggatac cccgaactgc agctgaggat attgtacaac 4321 aatgtgaagt atgtcaagaa aataaaatgc ccagcacaat aaggggaagc aataggagag 4381 gaatagatca ttggcaagta gactatacac attatgagga caagataata ttagtatggg 4441 tagaaacaaa ttcaggatta atatatgcag aaagagtaaa aggggaaaca ggacaagaat 4501 ttagaatcat gactataagg tggtatggtc tgtttgcccc aaagtcattg cagtctgaca 4561 atggaccagc atttgtagca gagccaacac agctactaat gaaatatttg gggataacac 4621 acacaacagg gataccatgg aatccccaat cgcaagcact agtagaaaga actcatcaaa 4681 ctctaaaaaa tacaatagaa aaatttgttt ctatgtttgc ctcatttgat tcagcaatag 4741 ccgcagcatt aatcacacta aatataaaaa gaaagggtgg gctagggaca agccctatgg 4801 atatattcat atttaataag gaacagcaaa gaatacaaca gcaatctaca agaaatcaat 4861 caaaatttcg attttgttat tacagagtca ggaaaagagg acacccaggc gagtggctgg 4921 gaccaacaca ggtactctgg gaaggggaag gagcaatcgt aataaaagat aaaaatctag 4981 aaaagtattt agtcatagca aaaaaggatg ttaagttcat accgcaacca aaagaaatac 5041 aaacagaata aaatcaggga agtaggtccc cagttgccac tctgggcatg gaaagaaata 5101 gcatttagca tcaatcagga accttattgg tatagtacca taagattaca gggtttaatg 5161 tggaacaaaa ggggacacaa acttatcttt gtcaaggagg aaaatggata tgagtattgg 5221 gaaacaacga ataaacagtg gagaatggaa ttaagaaggg atcttaggct aatagctcaa 5281 ataaattttc gcaatgcttg gcagtataaa agtcaagaaa aatggaacat catagggata 5341 tggtatgact caccagggga gtacagagac aaggaaaaac aattttggtt tcattggaga 5401 atagcaatgt gtagctgcaa gaaagaaaga tgggatatcc gagactttat ggtaggaaaa 5461 catagatggg atttatgtaa atcatgcata cagggagaaa tagtgaggca cacagagcca 5521 aggagcttgc aacgcttagc attattgcat atagtaagaa accatgtatt tcagataatg 5581 ccgctctgga gagcaaggag agtaacagtg caaaggttcc catggtccgg gaccgaaggg 5641 ttatacgata ccttggtcta tacaggattg ctgggacatg gaatcaatat ataattaatg 5701 gaggaagcac caagaagaag gccaggaggc agcagagaag ctgaagggat atttcggtat 5761 tatgaggatt gggaatgctg ggaccatgta agccagcggg tgccaaacga ggtattgcag 5821 agatggctcg ctatgcttac taataatcaa cttaggagaa aggtaattag ggaggcacag 5881 atatggatgt ggaaaaatgc taacgcacct attagaagaa actgtggatg tagactctgt 5941 aaccccggat ggggaagtca agtaagggat gttgaactgt gaaagtctgt ttaggatggc 6001 aagcagtaag aacatgccaa gcaggataac gcagaagagc atggaaccgc ctctcagaga 6061 gacttggcaa caagtggtgc aagagatggt aatgaggaaa cagagagacg aagaagaaaa 6121 acaaaatttg gtaacaggta aggaaaaatc ttgggtaagt attgacctcc tggggaccaa 6181 acaagaaggg aaaaggcaga aggtaaacat atggggacca tgggaaaaat ggggaattaa 6241 aatagtatgg gtaatgctat gggtaataca actaatgcta tggggatgcc tcatatggga 6301 aatgggcaag aaacatagtt gtaacgcaga agaggtcata gcattggtgg atgacccagg 6361 aggatttcaa aaggtaaaat atgtagaatc agttccggta acctgtatga caaaaaattt 6421 tactcaatgg ggatgtcaac cagagggagc atatccagac ccagacttag aatatcgaaa 6481 catatcccaa gatattctag agcaagtata taaacaggaa tggccatgga atacatatca 6541 ctggccttta tggcaaatgg agaatatgag gcagtggatg aaggaaaatg aaaaagaata 6601 tacaagcaga aataataaaa caaaggagga tatagatgct ctcttagcag gaaagatcag 6661 aggaaggttt tgcgtgcctt atccatttgc attattaaaa tgtgaagaat ggtgttggta 6721 cccagccaat atcaatcagg aaacagggca tgcacaacaa ataaaaataa attgtacaaa 6781 ggcaaaagca gtatcatgta cagaacaaat gcctttagca gcagtacagc gggtatattg 6841 ggaaaaagaa gatgaagaag gcatgaagtt tatgaacata caagcttgta atgagtcaca 6901 gctaagatgt aagacaagcc caggaggatg tgtgcagggt tacccaattc ctgtaggagc 6961 agaaataata cccgagagta tgaaatatct cagaggaaag aaaagcccat atggagggat 7021 taaagataaa aacggagaat tgaagctgcc tctctcagta agggtgtggg tgagaatggc 7081 taatttatca ggatgggtaa atgggacacc accttattgg agtgcaagaa taaagggaag 7141 cacaggcatc aatgggacga gatggtacgg gataggaaca ttacaccact tagggtataa 7201 tataagtagt aaccctgaga agggactgtg caattttacg aaggaattat ggataggagg 7261 ggatagattc cagtatcagt ataaaccctc atggaattgt tcacaaaatt ggacaggata 7321 tccggtatgg catgtgttta gatatttaga tatgacagaa catatgacga gcagatgtgt 7381 acagagacca ctaagacata acataactgt aggaaatgga acaataacag ggaattgtag 7441 tgtcacagat tgggagggct gtaattgtac aagatcagga aattatttgt ataatagcac 7501 tacaggagga cttctagtaa taatatgtag acaaaattca acaataacag gaataatggg 7561 cactaataca aattggacaa ctatgtgggg aatatacaaa aattgttcag agtgtaaaaa 7621 tagtacacta gacagaacag acaacgggac attgggaaca gtaaacaata taaattgcag 7681 tttaccgcat tacaatgaga gtaacaaatg gacatgtgca gccagaaaca gcaagaagaa 7741 gagagactct ttatatatag caggaaggga tttttgggga agagtaaaag ccctgtatag 7801 ctgtgaaagt aatttagggg gattagatgg aatgatgcac caacaaatgg tactacaaaa 7861 atatcaagta ataaaagtga gagcttacac atatggtgtt gtagacatgc ctaaagcata 7921 tcgtgagaaa aatatgagaa acaaaagaag tacagaaata agcagaccaa ggaaaaagag 7981 agggatagga ttggtcatag tgcttgctat catggctata atagctgctg caggagctgg 8041 actcggcgtt gctaatgccg tgcagcaatc ctacaccagg acggctgttc agtctcttgc 8101 taacgcaact gctgctcagc agaatgtgtt agaagcaact tatgccatgg ttcagcatgt 8161 ggcaaaaggg gtaagaatat tagaggcacg agtagctcga gtagaagcta tagtcgatag 8221 aatgatgctc tatcatgaat tggattgttg gcattatcaa cactattgtg taacctctac 8281 tagaacagaa gtagcacaat atgtaaattg gacaagatat aaggataatt gcacatggca 8341 gcagtgggaa gaagagatag agcaacacga ggcaaattta agcctattgc tcaaagaagc 8401 agcgttacaa gtacaaatag cacaaagaga tgcacaaaga ataccggatg tctggaaggc 8461 attacaagaa gcatttgact ggtcaggatg gttctcttgg ctcaaatata taccctggat 8521 agtagtatgc atagtaggag taatatgttt tagactacta atgtgtgtga taacaatgtg 8581 tttacaggcc tacaggcaag ttcgggagat ccgatataca cgggtaacag tagtgataga 8641 agcacccgtg gacctggagg aaaaacaaag agaagaaagg gatggttcca gtggctcaga 8701 aaacttagag cacgagaaaa gaacatcccc tcgcagtttt atccagatat ggagggcaac 8761 tgtgcaggct tggaaaacct caccctgggg gaagggatgg aagaaaatcc tatatatgac 8821 tctactgccg ctactaacac tgcaaatatg gatggaagaa actggatgga atggagataa 8881 gaggtgcaag aagaaaaaag aaagggtgga ctgtcaggac agagaaagca tgcctgccat 8941 agagaatgag tatgtagagc tgagctagat ttacgggaaa gcacaatcat tgttatcaga 9001 aagcagagtc aggatgacac agcaaatgta accgttatca gaaagcagag tcaggatgac 9061 acagcaaatg taaccgcaag ttccgcttgt aaacgctaaa tcatgtatca gctgatgctt 9121 aggtcataac cgcaattgta aacaagttgc ctataaaagc tgcttgctag ctgggagaga 9181 tcagagcact cttgggagtg gaagctccca ggtctctcct gcctgactgt ggagacaata 9241 aaggagttac tttaca //