Path: utzoo!attcan!uunet!bionet!life!mia From: mia@life (Mia McLeod) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003162104.AA20722@life.LANL.GOV> Date: 16 Mar 90 21:04:14 GMT Sender: daemon@genbank.BIO.NET Lines: 132 LOCUS HAEC2C 721 bp ss-mRNA INV 10-AUG-1989 DEFINITION H.contortus collagen 2C mRNA, 3'end. ACCESSION J04670 KEYWORDS collagen; cuticle protein. SOURCE H.contortus (isolate BPL1), mixed population of third and fourth stage larva, cDNA to mRNA, clone 2C. ORGANISM Haemonchus contortus Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Spiruria; Spirurida; Spirurina; Filarioidea; Filariidae. REFERENCE 1 (bases 1 to 721) AUTHORS Shamansky,L.M., Pratt,D., Boisvenue,R.J. and Cox,G.N. TITLE Cuticle collagen genes of Haemonchus contortus and Caenorhabditis elegans are highly conserved JOURNAL Mol. Biochem. Parasitol. 37, 73-86 (1989) STANDARD full staff_review COMMENT Draft entry and computer readable copy of sequence [1] kindly provided by G.Cox, (06-02-89). FEATURES from to/span description pept < 1 635 collagen 2c (AA at 3) mRNA < 1 721 collagen 2c mRNA BASE COUNT 186 a 231 c 201 g 103 t ORIGIN 1 ggcaggctgg ctatggaaat tgccaggctt gctgtaccgg tgggcaagct ggtcctccag 61 gaatgcccgg aaaccctgga cgaccaggaa acccaggagc acccggtatt cctggcaacc 121 ctggacggcc tcctgttcag ccgtgcgacc caattccaat ccctccatgc aaaccgtgcc 181 cacaaggacg accaggaccc ccaggaccta tcggacctcc aggagagcct ggcactcccg 241 gaaacccagg agctccagga aacgatgcac ccccaggccc tcctggaccg aaaggaccac 301 caggaccacc aggaaaagca ggagcgccag gtgcagcagg tcaaccagga gcaaacgcac 361 cttcagagcc tctcgttcct ggaccacctg gacctccagg acctaccgga ccagagggac 421 cccctggacc aaacggagca cctggacatc ctggcgcacc aggagcgcct ggagagaagg 481 gccctcgcgg acaagatggt cacccaggag cgccgggaaa tgctggtcat cccggacaac 541 caggacagcc cggaccacca ggagagcgtg gtgtgtgccc gaaatactgc tcaatggatg 601 gtggtgtctt cttcgaagat ggaactcgtc gctaaaggct caaatcagga agagccacga 661 atcagaaagc cgttacgatg caactttata ttacgtccta atgaatctag attcacgaca 721 g // LOCUS HAEC3A3 1309 bp ds-DNA INV 10-AUG-1989 DEFINITION H.contortus 3A3 collagen gene, complete cds. ACCESSION M32820 J04671 KEYWORDS collagen; cuticle protein. SOURCE H.contortus (isolate BPL1), ensheathed third stage larva (SL3) DNA, clone lambda 3a3. ORGANISM Haemonchus contortus Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Spiruria; Spirurida; Spirurina; Filarioidea; Filariidae. REFERENCE 1 (bases 1 to 1309) AUTHORS Shamansky,L.M., Pratt,D., Boisvenue,R.J. and Cox,G.N. TITLE Cuticle collagen genes of Haemonchus contortus and Caenorhabditis elegans are highly conserved JOURNAL Mol. Biochem. Parasitol. 37, 73-86 (1989) STANDARD full staff_review COMMENT Draft entry and computer readable copy of sequence [1] kindly provided by G.Cox, (06-02-89). FEATURES from to/span description pept 175 339 3A3 collagen, exon 1 397 946 3A3 collagen, exon 2 1006 1178 3A3 collagen, exon 3 pre-msg < 175 1216 3A3 collagen mRNA and introns IVS 340 396 3A3 collagen intron A IVS 947 1005 3A3 collagen intron B signal 1199 1204 polyA signal signal 1246 1251 polyA signal signal 129 136 TATA box BASE COUNT 321 a 311 c 377 g 300 t ORIGIN 1 aagctttcag tcgtcctagg agctattcca cagtcagttc taaactctgt ctgttttttt 61 ctgcgctaag attggggctg gaggcgagac gctaagaatg cgctacacgg tacgctcttg 121 cctgcagcta tataaaggta gccggctaat ctggctggtg ttgcgcgtcg gcgaatggac 181 gtaatcgacc atcgcatcaa ggcctatcgg tttgtcgcct atgctgctgt gggattctcg 241 gtggtagctg tgctgtcggt ctgcgttacc ctaccgatcg tctacaacta tgtgcattat 301 gtgagaaagt cattacataa ggaggcatcc ttgtgcaagg taagatcctc caccatttaa 361 ggttgctttc cactcactct actgggtacg tttcagatct cgactaactc cgtctgggat 421 gacgtgacag ttttgaggct ggctcatttc ggtaacagga cagcacgtca agcaataacg 481 agctctgaag agaacggagg atgtgaatcg tgctgtcgac cgggaccgcc tggtcctcct 541 ggtccaccgg gaagaccggg aaggccgggc cgcccaggtg cacctggtct acctggggtt 601 cctggtttac cgcctccaga tggcagttgt gaacctgtct cgataccacc atgtgcagaa 661 tgtccagcag gaccacccgg tccacctgga aaaccgggtc ctccagggga cccaggagag 721 gatggtcagc ctgggccacc tggtcaagat ggtattccag gccagcaagg aaccaaaggc 781 ccaccaggtc caccaggaat accaggaaag ccaggcgaat caggagaggt tggtgaagat 841 gctgaatgtg aacctgttgc tcccggtgat caaggtccac ccggagaacc aggaccagaa 901 ggacctccag gggaacccgg cctgcaggga cctgtcggaa tgccaggtat ttgactaaca 961 gtatatagag gtatcctttc agaaagaggt gtagtgtaat ttcaggccaa gtgggtcaaa 1021 aaggagaaag cggaagtgat ggtcaactgg acttcgatgg cagccccgga cgtcctggtc 1081 ctcctggtcc tcctgggcga ccaggcgagc caggaatttg cccgaagtat tgtgctattg 1141 atggagggat tttcttcgaa gatggaactc gtcgttaaaa ttcaaaggaa cgctgtacaa 1201 taaataatta attaccagtt gaccattttc gagatctgtg ctgtgaataa aggtggtgta 1261 aggatggaaa agcgagtaaa agtggtgtaa ggatggaaaa atcggatcc // LOCUS HAEC8E 392 bp ss-mRNA INV 10-AUG-1989 DEFINITION H.contortus 3A3 collagen mRNA, 3' end. ACCESSION M32821 J04671 KEYWORDS collagen; cuticle protein. SOURCE H.contortus, cDNA to mRNA. ORGANISM Haemonchus contortus Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Spiruria; Spirurida; Spirurina; Filarioidea; Filariidae. REFERENCE 1 (bases 1 to 392) AUTHORS Shamansky,L.M., Pratt,D., Boisvenue,R.J. and Cox,G.N. TITLE Cuticle collagen genes of Haemonchus contortus and Caenorhabditis elegans are highly conserved JOURNAL Mol. Biochem. Parasitol. 37, 73-86 (1989) STANDARD full staff_review COMMENT Draft entry and computer readable copy of sequence [1] kindly provided by G.Cox, (06-02-89). FEATURES from to/span description pept < 1 354 collagen 8E (AA at 1) mRNA < 1 392 collagen 8E mRNA variant 9 9 t in 8E mRNA; c in 3A3 gene variant 45 45 a in 8E mRNA; g in 3A3 gene variant 111 111 a in 8E mRNA; t in 3A3 gene variant 162 162 a in 8E mRNA; g in 3A3 gene variant 165 165 t in 8E mRNA; a in 3A3 gene variant 219 219 a in 8E mRNA; t in 3A3 gene variant 246 246 g in 8E mRNA; a in 3A3 gene variant 288 288 t in 8E mRNA; a in 3A3 gene variant 291 291 t in 8E mRNA; a in 3A3 gene variant 297 297 t in 8E mRNA; c in 3A3 gene variant 303 303 a in 8E mRNA; g in 3A3 gene variant 309 309 c in 8E mRNA; t in 3A3 gene variant 312 312 c in 8E mRNA; t in 3A3 gene variant 333 333 t in 8E mRNA; c in 3A3 gene variant 339 339 c in 8E mRNA; t in 3A3 gene BASE COUNT 111 a 95 c 114 g 72 t ORIGIN 1 caaggaacta aaggcccacc aggtccacca ggaataccag gaaaaccagg cgaatcagga 61 gaggttggtg aagatgctga atgtgaacct gttgctcccg gtgatcaagg accacccgga 121 gaaccaggac cagaaggacc tccaggggaa cccggcctgc aaggtcctgt cggaatgcca 181 ggccaagtgg gtcaaaaagg agaaagcgga agtgatggac aactggactt cgatggcagc 241 cccgggcgtc ctggtcctcc tggtcctcct gggcgaccag gcgagcctgg tatttgtccg 301 aaatattgcg ccattgatgg agggattttc tttgaagacg gaactcgtcg ttaaaattca 361 aaggaacgct gtacaataaa taattaatta cc //