Path: utzoo!attcan!uunet!bionet!haploid!jeh From: jeh@haploid (Jamie Hayden) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003162216.AA12553@haploid.LANL.GOV> Date: 16 Mar 90 22:16:52 GMT Sender: daemon@genbank.BIO.NET Lines: 214 LOCUS MZEADH1 879 bp ss-mRNA PLN 01-MAR-1983 DEFINITION maize alcohol dehydrogenase (adh1) mrna 3' end and flank. ACCESSION J01239 KEYWORDS alcohol dehydrogenase; dehydrogenase. SOURCE maize seedling root monosomes and polysomes. ORGANISM Zea mays Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 1 to 879) AUTHORS Gerlach,W.L., Pryor,A.J., Dennis,E.S., Ferl,R.J., Sachs,M.M. and Peacock,W.J. TITLE cdna cloning and induction of the alcohol dehydrogenase gene (adh1) of maize JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79, 2981-2985 (1982) STANDARD simple staff_review BASE COUNT 206 a 188 c 253 g 232 t ORIGIN 1 ggaggtgcaa ggattgctgg agcgtcaagg atcattggtg tcgacctgaa ccccagcaga 61 ttcgaagaag ctaggaagtt cggttgcact gaatttgtga acccaaaaga ccacaacaag 121 ccagtgcagg aggtacttgc tgagatgacc aacggagggg tcgaccgcag tgtggaatgc 181 actggcaaca ttaatgctat gatccaagct ttcgaatgtg ttcatgatgg ctggggtgtt 241 gctgtgctgg tgggtgtgcc acataaggac gctgagttca agacccaccc gatgaacttc 301 ctgaacgaaa ggaccctgaa ggggaccttc tttggcaact ataagccacg cactgatctg 361 ccaaatgtgg tggagctgta catgaaaaag gagctcgagg tggagaagtt catcacgcac 421 agcgtcccgt tcgccgagat caacaaggcg ttcgacctga tggccaaggg ggagggcatc 481 cgctgcatca tccgcatgga gaactagatt tcgctgtcta gtttgtgatc tggcctaggc 541 ttggggttaa taaaggaggc aatgctagcc tgccctttcg atgaggaggt acatacacgc 601 tggcgatgga ccgcgcttgt gtgtcgcgtt cagtttggct tttgccaagc actagggtag 661 cttcccgtgt cggtaattat atggtatgaa ccatcacctt ttggctctac acggtatgaa 721 cgtaagatac aaattccaac tacctctagc tcgcttgtgt ggtatctgta tcagtataca 781 tgtgtttgtt tgcttatgtg tttgtttgct tgtatttgct ggtgtctgta tcgcgggatg 841 caatgagttg ttgtttggtt gtgtcaacca ggctcaaat // LOCUS NEUQA2 648 bp ds-DNA PLN 01-MAR-1983 DEFINITION neurospora crassa qa gene cluster, gene qa2, 5' end. ACCESSION J01249 KEYWORDS . SOURCE neurospora crassa. ORGANISM Neurospora crassa Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Pyrenomycetes; Sordariales; Sordariaceae. REFERENCE 1 (bases 1 to 648) AUTHORS Alton,N.K., Buxton,F., Patel,V., Giles,N.H. and Vapnek,D. TITLE 5'-untranslated sequences of two structural genes in the qa gene cluster of neurospora crassa JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79, 1955-1959 (1982) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description MSG 191 >648 messenger RNA CDS 277 >648 reading frame BASE COUNT 153 a 207 c 153 g 135 t ORIGIN 1 ggcctttcga atggtcatca gtgcagtgac gagcaatgtc acggaagcgg gggacgggta 61 atcgcttatc cgctcgtcgt gcagacaact tcgtccgtgt attagagatg ggaatgatga 121 gggaaccgtg attaaacaac aaaacataaa cacacttcaa ttcaaccttc tggcctgtga 181 gttgttgggt atagtgcggc ggcatctttc ggacgcattc cctgttgcgc ccatctccca 241 caagcccatc gcacccaacc agaggtacca aacacaatgg cgtccccccg tcacattctc 301 ctcatcaatg gccccaatct caacctcctc ggcacccggg agccccaatc tacggctcaa 361 tcaaccctcc atgacattga gcaagcctcc cagactctgg cgtcctcgct aggtcttcgt 421 cttacaacct tccagtccaa ccatgaagga gccatcatcg accgtatcca tcaagcagcg 481 ggattcgtcc cgtctccacc gtcaccgtcg ccgtcaagtg ccgcaaccac gacggaggca 541 ggattgggtc ccggagacaa agtgtcggcc atcatcatta accccggcgc ttatacgcac 601 acgagtatag gcatccgcga cgcgcttctg gggacaggaa ttccgttt // LOCUS NEUQA3 590 bp ds-DNA PLN 01-MAR-1983 DEFINITION neurospora crassa qa gene cluster, gene qa3, 5' end. ACCESSION J01250 KEYWORDS . SOURCE neurospora crassa. ORGANISM Neurospora crassa Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Pyrenomycetes; Sordariales; Sordariaceae. REFERENCE 1 (bases 1 to 590) AUTHORS Alton,N.K., Buxton,F., Patel,V., Giles,N.H. and Vapnek,D. TITLE 5'-untranslated sequences of two structural genes in the qa gene cluster of neurospora crassa JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79, 1955-1959 (1982) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description MSG 327 >590 messenger RNA CDS 418 >590 reading frame (590 is 2nd base in codon) BASE COUNT 151 a 192 c 107 g 140 t ORIGIN 1 gttgaagaga gctcttcctt ctaaatcact gaaatcccca gagcatgccc aaaggcaaaa 61 cgcacaacct gaatcttttc ccttatgcag gaccaaatcg gaccactagg cagcccagct 121 ttccccaaat tccccgagga cattcgagcg ttctcattca tcctcctcca cgaagtgctt 181 tgttacgatg gagatgctta gtcgaattga accctgtcaa ctccacgcgc ccatgtagta 241 atgaaaatgg gggaataact tatagccacg ccttatggct ctctctcccg agttagacga 301 tctcgggaat tccttaggtt ctctctattt tcattccggt cttctgtcga atcttgattt 361 tcgagtgact gtgacttctc atagccagat acaccacaca atcaagcata tatcaccatg 421 tcgacagcaa ccaccacaac atcagcgacg acgacgatgt cggtcgtcca gccccgacag 481 caaagagctc acctcaccag cacacccgac atcaccccct acaccagaca tggctatctc 541 ttcggccagg atggcccctc tcctccactc catcggttaa ctcccacctc // LOCUS SOYLBTRUN 294 bp ds-DNA PLN 06-JAN-1983 DEFINITION soybean leghemoglobin truncated gene. ACCESSION J01305 KEYWORDS globin; leghemoglobin. SOURCE soybean root nodule dna; clone ch4gmlb4, plasmid pbr322. ORGANISM Glycine max Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea. REFERENCE 1 (bases 1 to 294) AUTHORS Brisson,N. and Verma,D.P.S. TITLE soybean leghemoglobin gene family: normal, pseudo and truncated genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79, 4055-4059 (1982) STANDARD full staff_review COMMENT this sequence has limited homology with lbgi: the last exon and the noncoding region at the 3' end. a stop codon is present in the correct frame indicating that it could not be functional. no distinct intron-exon junction observed. the lb genes in general show striking similarity to animal globin genes and may in fact be primitive globin genes. cf soylbgi, soylbgii, soyplb1. EMBL features not translated to GenBank features: key from to description CDS 34 168 leghemoglobin (part 4) FEATURES from to/span description BASE COUNT 101 a 35 c 68 g 90 t ORIGIN on the 1.3kb ecor-i/ hind-iii fragment 1 gtccagtcac tgttccccgt tgattgggtg gaagcaaact gagatgaatt ggcatatgct 61 attaagaagg tagttaggga caaatggagt gacgagttga gcagtgcttg ggaagtagcc 121 tgggaagtag cctatgatga attggcagca gctattaaga aggcatttta ggatctataa 181 ttgtcgtaaa gtgtaataaa taaatattat ttcactaaaa cttgttatta aacaagctct 241 caatataaat gtttgttaaa ataagtaaat tatatggtat tggataaaca atct // LOCUS SOYPLB1 145 bp ss-mRNA PLN 06-JAN-1983 DEFINITION soybean leghemoglobin fragment for hybridization. ACCESSION J01306 KEYWORDS globin; leghemoglobin. SOURCE soybean cdna prepared to nodule rna; plasmid pbr322. ORGANISM Glycine max Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea. REFERENCE 1 (bases 1 to 145) AUTHORS Sullivan,D., Brisson,N., Goodchild,B., Verma,D.P.S. and Thomas,D.Y. TITLE molecular cloning and organization of two leghaemoglobin genomic sequences of soybean JOURNAL Nature 289, 516-518 (1981) STANDARD full staff_review COMMENT this sequence hybridizes to at least ten ecori genomic restriction fragments representing lb sequences dispersed through more than 30 kilobases of nuclear dna. two of those fragments yield the clones ch4gmlb4 and ch4gmlb11 which carry three lb genes(cf soylbgi, soylbgii,soylbgtrn). this sequence most likely represents a variant of the lbgi gene starting at amino acid 99 (cf soylbgi). EMBL features not translated to GenBank features: key from to description CDS <1 138 reading frame FEATURES from to/span description BASE COUNT 46 a 19 c 45 g 35 t ORIGIN bamhi site 1 gatcctcagt tcgtggtggt taaagaagca ctgctgaaaa caataaagga ggcagttggg 61 gacaaatgga gtgatgaatt gagcagtgct tgggaagtag cctatgatga attggcagca 121 gctattaaga aggcatttta ggatc // LOCUS SOYRUBP 1601 bp ds-DNA PLN 02-MAY-1983 DEFINITION soybean ribulose-1,5-bisphosphate carboxylase small subunit. ACCESSION J01307 KEYWORDS carboxylase; ribulose bisphosphate carboxylase. SOURCE soybean from a lambda vector charon 4a library. ORGANISM Glycine max Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea. REFERENCE 1 (bases 1 to 1601) AUTHORS Berry-Lowe,S.L., McKnight,T.D., Shah,D.M. and Meagher,R.B. TITLE the nucleotide sequence, expression, and evolution of one member of a multigene family encoding the small subunit of ribulose-1, 5-bisphosphate carboxylase in soybean JOURNAL J. Mol. Appl. Genet. 1, 483-498 (1982) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description CDS 286 456 rubpcase (part 1) CDS 650 784 rubpcase (part 2) CDS 1075 1302 rubpcase (part 3) BASE COUNT 461 a 325 c 299 g 508 t 8 others ORIGIN 1 ctccgagagg aatgaataat ggaacctcca tgtgtcacct cctcatatgg tatccaacaa 61 taaggctacc attcgaaaat tttcctcgac tcgtgtggcc tatatgctgt aatgtcatca 121 cttattcgaa tccaacggtt gtaacttttc ggcaaccaat cctctccatt tcacaccatt 181 ggattagtac tacacaaatc gacactatta tatatagcaa gtttgagcag aagcttggat 241 atctggcagc agaaaaacaa gtagttgaga actaagaaga agaaaatggc ttcctcaatg 301 atctcctccc cagctgttac caccgtcaac cgtgccggtg ccggcatggt tgctccattc 361 accggcctca aatccatggc tggcttcccc acgaggaaga ccaacaatga cattacctcc 421 attgctagca acggtggaag agtacaatgc atgcaggtaa gacaactcca cacatatata 481 cacacaagag gcaccaaaaa gtttaaaatt catcttacac atttatatat gctccaaaat 541 gttacttaat ttaacatgtt agtcataggt tacttaaatt aacatgttag tcataggaaa 601 atgtgcacat gtgcatgttt gttaactaac ttttgatgca aattactagg tgtggccacc 661 aattggcaag aagaagttcg agactctttc ctacttgcca gacctcgatg atgcccaatt 721 ggccaaggaa gtcgaatacc ttctaaggaa aggatggatt ccttgcttgg aattcgagtt 781 ggaggtcaat ttcttgcaac cccttttggt ttaattatag tttcttagtc ttagtttgtt 841 tnaacttatt ttaaagaaat aatcgcttct cttgctggcg tgctaaaagt acttttggaa 901 acaaaaaaaa aaaaaaaaaa aagagaagtg gttgttttnc aaaatttaag tttatctaat 961 ggatttttct atctcagact tatcaattat tgatcaaatc tgtccctatt attacaaaac 1021 aagcacttgg ttttnagttt tnatggttna tatgtttgtt gtgtttgtat atagcacggt 1081 ttcgtgtacc gtgagcacaa caggtcacct ngatactatg atggacgcta ctggaccatg 1141 tggaagctgc ctatgtttgg ctgcactgat gcttctcagg tgttgaagga gcttcaagag 1201 gctaagactg cataccccaa tggcttcatc cgtatcattg gatttgacaa cgttcgccaa 1261 gtgcagtgca tcagcttcat cgcctacaag cccccaggct tctaagtcat tngaagtttg 1321 caaagcatct gtagcctccc cactttgttt gttgtactta aactacattc ccatttgttt 1381 tgctttatga gatttcatca tcctgtattt ttggtttctg ttttcggact tcatggaaat 1441 taatggatgn gaactaatga ataagctatt gtgttgtgtt gctttgtttc caaataactt 1501 caagaaccca ttgtccttgc atttccatct tgtgggttga aattagtctc ttctaaattt 1561 aagttaattg tgtcactaaa tgatggttaa caaaggaatt c //