Path: utzoo!attcan!uunet!bionet!life!jeh From: jeh@life (Jamie Hayden) Newsgroups: bionet.molbio.genbank.updates Subject: (none) Message-ID: <9003162225.AA14041@life.LANL.GOV> Date: 16 Mar 90 22:25:04 GMT Sender: daemon@genbank.BIO.NET Lines: 584 LOCUS CHKCONALB 75 bp ds-DNA VRT 08-APR-1982 DEFINITION chicken conalbumin gene (tata/taga region). ACCESSION J00839 KEYWORDS conalbumin; ovotransferrin. SOURCE chicken. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 75) AUTHORS Grosschedl,R., Wasylyk,B., Chambon,P. and Birnstiel,M.L. TITLE Point mutation in the TATA box curtails expression of sea urcchin H2A histone gene in vivo JOURNAL Nature 294, 178-180 (1981) STANDARD full staff_review COMMENT a single base change from t to g, in the third position of the "tata box" reduces transcription in vitro 20- to 40-fold. FEATURES from to/span description mRNA 70 > 75 conalbumin mRNA mut 41 41 t to g mutation of "tata box" BASE COUNT 22 a 21 c 19 g 13 t ORIGIN taqi site 1 ggtcattgct tctgcaaaca cagccagggc tgctcctcta taaaagggga agaaagaggc 61 tccgcagcca tcaca // LOCUS CHKLYSTR2 379 bp ds-DNA VRT 01-MAR-1983 DEFINITION chicken embryo lys-trna-2 gene and promoter. ACCESSION J00881 KEYWORDS transfer RNA; transfer RNA-Lys. SOURCE chicken embryo crude nuclear preparation. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 379) AUTHORS Wittig,S. and Wittig,B. TITLE function of a trna gene promoter depends on nucleosome position JOURNAL Nature 297, 31-38 (1982) STANDARD full staff_review COMMENT The sequence 5'-T-T-C-G-A-3' (bases 263-267) is localized near the middle axis of the nucleosome and affects promotion of lys-tRNA-2 transcription. When 30bp palindromes are inserted at points prior to this sequence (between bases 219-220 and between bases 239-240), transcription is decreased in the first case, tolerated in the second. A model for gene-nucleosome association is proposed. FEATURES from to/span description tRNA 210 283 lys trna-2 BASE COUNT 80 a 93 c 96 g 110 t ORIGIN bam-hi site 1 gatccccttt tggggtttca ttttggggtt tttttttggg gggggggggg gggttcctgc 61 aatgcacctt cctcccgctg cggtgtctat ggtataatag gagcgactgt atgaagcaaa 121 ttctggcact cataaaatcg agccttccgt aaaccagccc caaatctgta acttaaggca 181 gaaaaaaagg cagaaaaaag gctttttttg cccggctagc tcagttggta gagcatgaga 241 ctcttaatct cagggtcgtg ggttcgagcc ccacgttggg cgcccttggt tttcgccatc 301 tcactttttg cccccaaaaa ggcacattgc aaatggctgc ttgtctctat actatccctt 361 tttcccccgc tatagggct // LOCUS CHKMYA1SM 848 bp ss-mRNA VRT 01-MAR-1983 DEFINITION chicken myosin alkali l-chain a1 mrna 3' end. ACCESSION J00887 KEYWORDS myosin; myosin light chain. SOURCE chicken leg skeletal muscle, cdna to polyadenylated rna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 848) AUTHORS Nabeshima,Y., Fujii-Kuriyama,Y., Muramatsu,M. and Ogata,K. TITLE molecular cloning and nucleotide sequences of the complementary dnas to chicken skeletal muscle myosin two alkali light chain mrnas JOURNAL Nucleic Acids Res. 10, 6099-6110 (1982) STANDARD full staff_review COMMENT chkmya1sm is compared to chkmya2sm; last 741 bases are identical and authors of [1] suggest that the a1 and a2 myosins may come from the same gene and be differentiated by a recombination event. FEATURES from to/span description pept < 2 535 myosin a1 light chain (partial) mRNA < 1 848 myosin a1 mRNA BASE COUNT 250 a 228 c 200 g 170 t ORIGIN 82bp upstream from a sau3a site 1 accagcaccc gcacccgcgc cagcacctgc accagcgccc gctaaaccca aagaaccagc 61 catcgacctc aagagcatca agatcgagtt cttcaaggag cagcaggatg acttcaagga 121 ggccttcctc ctctttgaca ggactggtga tgccaagatt accctgagcc aggtcggtga 181 catcgttcgg gcactgggac agaaccccac aaacgctgag atcaacaaga tcctgggcaa 241 ccccagcaaa gaggaaatga atgccaagaa gatcactttt gaagagttcc tgcccatgct 301 gcaagcagct gctaacaaca aggatcaggg tacctttgaa gactttgttg aaggtctgcg 361 tgttttcgac aaggaaggca acggcacagt catgggggct gagctccgcc atgtactggc 421 tacactgggc gagaagatga cagaagagga agtagaagaa ctgatgaaag gtcaggaaga 481 ctccaacggc tgcatcaact acgaggcatt tgtaaagcac atcatgtctg tctaagagga 541 cgtccccaga taacaaatga acaagttgaa ttcggaaaga ccagtaggca cctaagatct 601 gcctgagatg aaaattcttg ctctggcaga tcatcatcaa ccatggaaac tgcgtgactg 661 gacaatatgc ctccaaaccc actacttttc tttttaaccg tgcatccatg gacattgcct 721 ctgggtcact tccaaaactg aactttcacg ggggttgtgg aaactgacca ctgccgcacc 781 accacccaac acctctgtgt tcctgagatt gacctccgaa aataaagcat cagtaaatcc 841 ctgttgtc // LOCUS CHKMYA2SM 818 bp ss-mRNA VRT 01-MAR-1983 DEFINITION chicken myosin alkali l-chain a2 mrna. ACCESSION J00888 KEYWORDS myosin; myosin light chain. SOURCE chicken leg skeletal muscle, cdna to polyadenylated rna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 818) AUTHORS Nabeshima,Y., Fujii-Kuriyama,Y., Muramatsu,M. and Ogata,K. TITLE molecular cloning and nucleotide sequences of the complementary dnas to chicken skeletal muscle myosin two alkali light chain mrnas JOURNAL Nucleic Acids Res. 10, 6099-6110 (1982) STANDARD full staff_review COMMENT chkmya1sm is compared to chkmya2sm; last 741 bases are identical and authors of [1] suggest that the a1 and a2 myosins may come from the same gene and be differentiated by a recombination event. FEATURES from to/span description pept 53 505 myosin a2 light chain mRNA 1 818 myosin a2 mRNA BASE COUNT 234 a 219 c 184 g 181 t ORIGIN haeiii site 1 cctctcagct aatccctccg gcccgtccgc tctacttttc caactctcaa tcatgtcctt 61 ctcacctgac gaaatcaatg acttcaagga ggccttcctc ctctttgaca ggactggtga 121 tgccaagatt accctgagcc aggtcggtga catcgttcgg gcactgggac agaaccccac 181 aaacgctgag atcaacaaga tcctgggcaa ccccagcaaa gaggaaatga atgccaagaa 241 gatcactttt gaagagttcc tgcccatgct gcaagcagct gctaacaaca aggatcaggg 301 tacctttgaa gactttgttg aaggtctgcg tgttttcgac aaggaaggca acggcacagt 361 catgggggct gagctccgcc atgtactggc tacactgggc gagaagatga cagaagagga 421 agtagaagaa ctgatcaaag gtcaggaaga ctccaacggc tgcatcaact acgaggcatt 481 tgtaaagcac atcatgtctg tctaagagga cgtccccaga taacaaatga acaagttgaa 541 ttcggaaaga ccagatggca cctaagatct gcctgagatg aaaattcttg ctctggcaga 601 tcatcatcaa ccatggaaac tgcgtgactg gacaatatgc ctccaaaccc actacttttc 661 tttttaaccg tgcatccatg gacattgcct ctgggtcact tccaaaactg aactttcacg 721 ggggttgtgg aaactgacca ctgccgcacc accacccaac acctctgagt tcctgagatt 781 gacctccgaa aataaagcat cagtaaatcc ctgttgtc // LOCUS CHKOM3EN 624 bp ds-DNA VRT 01-APR-1983 DEFINITION chicken ovomucoid gene, non-coding 3' end region. ACCESSION J00893 KEYWORDS ovomucoid. SOURCE chicken erythrocyte dna library. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 624) AUTHORS Gerlinger,P., Krust,A., Lemeur,M., Perrin,F., Cochet,M., Gannon,F., Dupret,D. and Chambon,P. TITLE multiple initiation and polyadenylation sites for the chicken ovomucoid transcription unit JOURNAL J. Mol. Biol. 162, 345-364 (1982) STANDARD simple staff_review COMMENT also see chkom5en. BASE COUNT 167 a 137 c 129 g 191 t ORIGIN x 1 ggatccactg gcgaacccca gcgagaggtc tcacctcggt tcatctcgca ctctggggag 61 ctcagctcac tcccgatttt ctttctcaat aaactaaatc agcaacactc ctttgtcttg 121 tttaatgctc tgcctcatgc aatgttttct tctgatttgt tggacggtga taccagactc 181 aatatgttcc atgctcgtgg ctctggagta taacaagaac aacatcttgc tcccatccct 241 gtcataaaag gcagaaaatt aaatacagat gcacaaacct cggctgtgta actttgcgca 301 taaatgacag tcagcctcca ttagtgttca gagcctttta gacagctgaa atactgctac 361 gaactgctga tgctggctga gctccccatg gacattgtcc gtgaaatata ttttgctttt 421 gtcctttgtt ggtgtattga actgatgttt tcttgatcca cgtgagagaa actttaataa 481 aaattataaa aaataatgcc tcccttaagc atttcttttc cctgatggaa tgaggccatt 541 caaaagaagg atgctttggc ggtaaaacag aggatttgtg ttgagatggg cagatgaatc 601 aagcagtgat ttccaggttt gatt // LOCUS CHKOM5EN 579 bp ds-DNA VRT 01-APR-1983 DEFINITION chicken ovomucoid gene, 5' end region. ACCESSION J00894 KEYWORDS ovomucoid. SOURCE chicken ([1]: erythrocyte dna library, [2]: estrogen stimulated oviduct). ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 579) AUTHORS Gerlinger,P., Krust,A., Lemeur,M., Perrin,F., Cochet,M., Gannon,F., Dupret,D. and Chambon,P. TITLE multiple initiation and polyadenylation sites for the chicken ovomucoid transcription unit JOURNAL J. Mol. Biol. 162, 345-364 (1982) STANDARD simple staff_review REFERENCE 2 (bases 317 to 578) AUTHORS Lai,E.C., Roop,D.R., Tsai,M.-J., Woo,S.L.C. and O'Malley,B.W. TITLE heterogeneous initiation regions for transcription of the chicken ovomucoid gene JOURNAL Nucleic Acids Res. 10, 5553-5567 (1982) STANDARD simple staff_review COMMENT also see chkom3en. 373 conflict 1 [1]:t, [2]:c. 377 conflict 1 [1]:t, [2]:non-existent. BASE COUNT 125 a 146 c 154 g 154 t ORIGIN x 1 gaggtgaata tccaagaatg cagaactgca tggaaagcag agctgcaggc acgatggtgc 61 tgagccttag ctgcttcctg ctgggagatg tggatgcaga gacgaatgaa ggacctgtcc 121 cttactcccc tcagcgttct gtgctattta gggttctacc agagtcccta agaggttttt 181 tttttttttt ggtccaaaag tctgtttgtt tggttttgac cactgagagc atgtgacact 241 tgtctcaagc tattaaccaa gtgtccagcc aaaatcggtt gcctaggaga cgcagaccat 301 taccttggag gtcaggacct caataaatat taccagcctc attgtgccgc tgacagattc 361 agctggctgc tctgtgttcc agtccaacag ttcggacgcc acgtttgtat atatttgcag 421 gcagcctcgg ggggaccatc tcaggagcag agcaccggca gccgcctgca gagccgggca 481 gtacctcacc atggccatgg caggcgtctt cgtgctgttc tctttcgtgc tttgtggctt 541 cctcccaggt gagtaactcc cagagtgctg cagaagctt // LOCUS CHKOVOM1 579 bp ds-DNA VRT 01-APR-1983 DEFINITION chicken ovomucoid gene, 5' region(seg 1). ACCESSION J00897 KEYWORDS ovomucoid. SEGMENT 1 of 3 SOURCE chicken erythrocyte dna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 579) AUTHORS Gerlinger,P., Krust,A., Lemeur,M., Perrin,F., Cochet,M., Gannon,F., Dupret,D. and Chambon,P. TITLE multiple initiation and polyadenylation sites for the chicken ovomucoid transcription unit JOURNAL J. Mol. Biol. 162, 345-364 (1982) STANDARD simple staff_review BASE COUNT 124 a 145 c 153 g 154 t 3 others ORIGIN 1 gaggtgaata tccaagaatg cagaactgca tggaaagcag agctgcaggc acgatggtgc 61 tgagccttag ctgcttcctg ctgggagatg tggatgcaga gacgaatgaa ggacctgtcc 121 cttactcccc tcagcgttct gtgctattta gggttctacc agagtcccta agaggttttt 181 tttttttttt ggtccaaaag tctgtttgtt tggttttgac cactgagagc atgtgacact 241 tgtctcaagc tattaaccaa gtgtccagcc aaaatcggtt gcctaggaga cgcagaccat 301 taccttggag gtcaggacct caataaatat taccagcctc attgtgccgc tgacagattc 361 agctggctgc tctgtgttcc agtccaacag ttcggacgcc acgtttgtat atatttgcag 421 gcagcctcgg ggggaccatc tcaggagcag agcaccggca gccgcctgca gagccgggca 481 gtacctcacc atggccatgg caggcgtctt cgtgctgttc tctttcgtgc tttgtggctt 541 cctcccaggt gagtaactcc cagagtgctg nnnaagctt // LOCUS CHKOVOM2 391 bp ds-DNA VRT 01-APR-1983 DEFINITION chicken ovomucoid gene, 3' region(seg 2). ACCESSION J00898 KEYWORDS ovomucoid. SEGMENT 2 of 3 SOURCE chicken erythrocyte dna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 391) AUTHORS Gerlinger,P., Krust,A., Lemeur,M., Perrin,F., Cochet,M., Gannon,F., Dupret,D. and Chambon,P. TITLE multiple initiation and polyadenylation sites for the chicken ovomucoid transcription unit JOURNAL J. Mol. Biol. 162, 345-364 (1982) STANDARD simple staff_review BASE COUNT 99 a 104 c 78 g 110 t ORIGIN 1 ggatccactg gcgaacccca gcgagaggtc tcacctcggt tcatctcgca ctctggggag 61 ctcagctcac tcccgatttt ctttctcaat aaactaaatc agcaacactc ctttgtcttg 121 tttaatgctc tgcctcatgc aatgttttct tctgatttgt tggacggtga taccagactc 181 aatatgttcc atgctcgtgg ctctggagta taacaagaac aacatcttgc tcccatccct 241 gtcataaaag gcagaaaatt aaatacagat gcacaaacct cggctgtgta actttgcgca 301 taaatgacag tcagcctcca ttagtgttca gagcctttta gacagctgaa atactgctac 361 gaactgctga tgctggctga gctccccatg g // LOCUS CHKOVOM3 233 bp ds-DNA VRT 01-APR-1983 DEFINITION chicken ovomucoid gene, 3' region(seg 3). ACCESSION J00899 KEYWORDS ovomucoid. SEGMENT 3 of 3 SOURCE chicken erythrocyte dna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 233) AUTHORS Gerlinger,P., Krust,A., Lemeur,M., Perrin,F., Cochet,M., Gannon,F., Dupret,D. and Chambon,P. TITLE multiple initiation and polyadenylation sites for the chicken ovomucoid transcription unit JOURNAL J. Mol. Biol. 162, 345-364 (1982) STANDARD simple staff_review BASE COUNT 68 a 33 c 51 g 81 t ORIGIN 1 acattgtccg tgaaatatat tttgcttttg tcctttgttg gtgtattgaa ctgatgtttt 61 cttgatccac gtgagagaaa ctttaataaa aattataaaa aataatgcct cccttaagca 121 tttcttttcc ctgatggaat gaggccattc aaaagaagga tgctttggcg gtaaaacaga 181 ggatttgtgt tgagatgggc agatgaatca agcagtgatt tccaggtttg att // LOCUS CHKSRU1R 463 bp ss-RNA RNA 06-JAN-1983 DEFINITION chicken u1 small nuclear rna (snrna). ACCESSION J00914 KEYWORDS nuclear RNA; small nuclear RNA. SOURCE chicken. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 463) AUTHORS Roop,D.R., Kristo,P., Stumph,W.E., Tsai,M.-J. and O'Malley,B.W. TITLE structure and expression of a chicken gene coding for u1 rna JOURNAL Cell 23, 671-680 (1981) STANDARD full staff_review REFERENCE 2 (bases 146 to 309) AUTHORS Branlant,C., Krol,A., Ebel,J.-P., Lazar,E., Gallinaro,H., Jacob,M., Sri-Widada,J. and Jeanteur,P. TITLE nucleotide sequences of nuclear u1a rnas from chicken, rat and man JOURNAL Nucleic Acids Res. 8, 4143-4154 (1980) STANDARD full staff_review COMMENT [1] determined that U1 RNA is synthesized by polymerase II; however, a "Hogness box" is not present upstream from its RNA transcription initiation site. The synthesis of U1 RNA in oviduct nuclei during different states of hormonal induction appears to be constitutive. [1] sequenced cloned genomic dna, [2] sequenced U1a RNA. See other loci containing u1rna in name. U1 RNA is capped with m2,2,7gppp and modified relative to genomic DNA: A, U and A are methylated at positions 146, 147 and 215, and U is modified at positions 150 and 151. This U1 gene is part of a multigene family (6-10 copies per haploid genome) that is not closely clustered. FEATURES from to/span description BASE COUNT 70 a 135 c 166 g 92 t ORIGIN hinfi site 145 bases upstream of u1 rna start 1 ccgtgggcct cggctcgtga gccgccgtgc ggaatagcgg tgcggggagc ggtgcgtgtt 61 aggagaggac agcggttggt gtgcgaacgc cgtgcggtgc gggctggtgg tggggcgtgg 121 ggagcggggc gggcgagagc aaagcatact tacctggcag gggagacacc atgatcaggc 181 aggtggtttt cccagggcga ggctcatccc ctgcactccg ggtgtgctga cccctgcgat 241 ttccccaaat gcgggaaact cgactgcata atttgtggta gtgggggact gcgttcgcgc 301 tctcccctga tttgcgcggt tcaaagacag aacgctgctc ttcacctgta ttcctcgctg 361 ctctccgtgg cgcggtgccg ccacaaccgg ctttcgccca cgccggagcg cggcgctgct 421 gtaaaggagc ggcgctgctc tccgcttcca tctccacggc ata // LOCUS CHKTROPA1 989 bp ss-mRNA VRT 01-MAR-1983 DEFINITION chicken major alpha-tropomyosin mrna. ACCESSION J00910 KEYWORDS alpha-tropomyosin; tropomyosin. SOURCE chicken; white leghorn 18 day embryos; leg skeletal muscle. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 989) AUTHORS MacLeod,A.R. TITLE distinct alpha-tropomyosin mrna sequences in chicken skeletal muscle JOURNAL Eur. J. Biochem. 126, 293-297 (1982) STANDARD full staff_review COMMENT [1] compares given sequence with the sequence of a second distinct alpha-tropomyosin gene in chicken leg muscle (see chktropa2). FEATURES from to/span description pept < 1 786 alpha-tropomyosin (partial) mRNA < 1 989 maj alpha-trop mRNA BASE COUNT 311 a 188 c 274 g 215 t 1 others ORIGIN about 72 bases downstream of major alpha-tropo. cds start 1 caagccgaag cggacaagaa ggcagcggag gagaggagca agcagctgga ggacgagctg 61 gtggctctgc aaaagaagct gaagggcact gaggatgagc tggacaaata ttccgagtcc 121 cttaaagatg cacaggaaaa gttggaactg gctgacaaaa aggccacaga tgctgagagt 181 gaagtagctt ccctgaacag acgcatccaa ctggttgagg aagagttgga tcgggctcag 241 gagcgnttgg ctactgccct gcagaagctg gaggaggctg agaaggctgc agatgagagt 301 gaaagaggaa tgaaggtcat tgaaaataga gcccagaagg atgaagagaa gatggaaatc 361 caagagatcc agcttaaaga agctaagcac attgctgaag aggctgaccg caagtatgaa 421 gaggtggctc gtaagctcgt gatcattgag ggtgacctgg agcgagctga ggagcgtgct 481 gaactatcag aaagcaaatg tgctgagctt gaagaggagt tgaaaactgt gaccaacaac 541 ctgaagtcgc tggaggctca ggctgagaag tactcgcaga aagaagacaa atatgaagag 601 gagattaaag ttctaactga caaactgaag gaggctgaga cccgtgctga atttgctgag 661 aggtcagtaa ccaagctgga gaagagcatt gatgatctag aagatgagct ttatgctcag 721 aaactgaagt acaaagccat cagcgaggag ctggaccatg ctctcaacga tatgacttcc 781 atataatttt tctttgcttc acttctccaa agacatcttc atcgggttgg ataaaacatc 841 tttccaagct tttggatgtt tcatggttct ctgtcctgtc tctagcttat tggctctatc 901 attctagcac ctgtttcaga atatgatctt cgtgctctat tgtacagaaa ctctacatct 961 ctaaatgtaa aataaacatc ccagctgta // LOCUS CHKTROPA2 546 bp ss-mRNA VRT 01-MAR-1983 DEFINITION chicken minor alpha-tropomyosin mrna. ACCESSION J00911 KEYWORDS alpha-tropomyosin; tropomyosin. SOURCE chicken; white leghorn 18 day embryos, leg skeletal muscle. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 546) AUTHORS MacLeod,A.R. TITLE distinct alpha-tropomyosin mrna sequences in chicken skeletal muscle JOURNAL Eur. J. Biochem. 126, 293-297 (1982) STANDARD full staff_review COMMENT [1] compares given sequence with the sequence of a second distinct alpha-tropomyosin gene in chicken leg muscle (see chktropa1). FEATURES from to/span description pept < 1 183 alpha-tropomyosin (partial) mRNA < 1 546 min alpha-trop mRNA BASE COUNT 121 a 133 c 134 g 156 t 2 others ORIGIN about 675 bases downstream of minor alpha-tropo. cds start 1 atcaagatcc tgactgataa actcaaagag gcggagaccc gtgctgagtt cgctgagcgc 61 tctgtagcca agctggagaa gaccatcgat gatttggaag atgagctcta tgcccagaaa 121 ctgaagtaca aagcaattag tgaggaactg gaccacgccc tgaatgacat gacttccata 181 taagtcttgc gattccaaac tccactttgg atttaccttt ctgcttggtg gcttgttctg 241 catctgcact ctgctttcat gctgtcgtca tctggctctg aattcgtact ttttcactta 301 cggtgcacgg ggcatccctg ggaatgagcg ctgtaaggat gctgaagctt gaaggcagca 361 gcagctccgg ttatgctgcg cttgctccta aacaaagctc cctctgtttg acccgatgtg 421 ccagacactg ccgtgctctg aggggctgcc cttttcaatg tctgggtgta gctgggagta 481 tgttgttctc atctgcatat cttatggaga agccataaag nnccttttgt attcttcttg 541 cctcta // LOCUS CHKX1 1674 bp ds-DNA VRT 01-DEC-1982 DEFINITION chicken x gene: leader exon and 5'flanking sequence. ACCESSION J00917 KEYWORDS ovalbumin. SEGMENT 1 of 4 SOURCE chicken dna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 1674) AUTHORS Heilig,R., Muraskowsky,R. and Mandel,J.L. TITLE the ovalbumin gene family:the 5' end region of the x and y genes JOURNAL J. Mol. Biol. 156, 1-19 (1982) STANDARD full staff_review COMMENT some sequence homologies with y and ovalbumin loci. see other chkx entries, chky entry and chkoval entry. EMBL features not translated to GenBank features: key from to description MSG 1328 1376 exon 1 (leader exon) FEATURES from to/span description pre-msg 1328 > 1674 oval-x message mRNA IVS 1377 > 1674 /oval-x leader intron A BASE COUNT 487 a 328 c 322 g 537 t ORIGIN ecor1 site at 5' end of 1.7kb ecor1 fragment 1 gaattccact ggctgttcag cattcacttc tgaatatctg aatactctgg agtctgcctt 61 cgcaaagcag caaatacttt cagactgttc cctaaatctc ttcctcttac ctattcacac 121 tgagttctct aattcatccc aacacctctg ctctgaattt tttcataaga agcttcagca 181 aaatgtgctt tctcctctca aatgtatgct gcagagcctt tggcttacag tggatatagc 241 ccaaattcca gtgaaaaact tcagtcttgc ctaggtgcag aaatagatgg agctgtgctt 301 ttaacaagta ctaactataa gcttcttcag ttctcaaact ctttcagcag accaaaacat 361 ttttcagtac agttttgttc tttaaaaaac tcataaagct ttgtttctat tcttacatgg 421 aaagcaatcc attacaaaat cctcaaaata gaatgaccat cctgcagctg actctgcttg 481 gaactgcatt attttctcta catcaagtgg ttgccatcca tgagaagcat ccctatgttt 541 ctctgcacac tgcagtaaga gatcacgtat atatcacact tttcccttca cccatcttgg 601 gagcagtgct acagtaaatt gtataattac agtgccccag agatgagaag aaactgaaca 661 gcaggaaagg agacacagtc ttaaaaagaa gaatgttttc caggaattga tgcactttct 721 tgcactcctt ggtaatatgg gactactctt gcctcacctt tagcagtggg tgctcattaa 781 atggtgaatg gtggtgggtc ttctggttct ccaatcatgt cttattttct cataatattt 841 tgggatcctt agattcatct gactgtgaga atcacttgat ctgatttttt tttttaatct 901 gattttgcag ctaagtttat ctgaagtgta ttatgcttat cctctttttt aagggttttt 961 ttttttttta aagtgtgtgt attcattatt cgtttggctc tagttatcga tatggctcaa 1021 tcaaattaat gtttaaattc tgaagtagag catgagacat gctagacttg aagttggtac 1081 agctttataa gatacaagaa aagcctgaat aattacattc tactattagg tttcacttca 1141 caaaataaat ttggctttct ccaagtagag taccagtcta atgttggcct actcagtgct 1201 ttcaagcaca atgaatcaaa aggcaatgac aaagggtagt aactcaaagg atgactctta 1261 gaaggctaac agggggagtg tccgaaaggg tactgtatat atcaccaagg actcagagaa 1321 tctgttcagg ttcaactggc aagctggatt attacgagcc tctttgatgt ttttctgtaa 1381 gtacttctcc aaataaaatg taacttctaa gttgtattct tgaatatgga aaaaacaaaa 1441 caaaacagaa atattatgta agaacttaga ggaaaaaagg gccgccttct attttatagt 1501 gttggcccac cacatcagag gcagatggtg gtggtatggc agtagaggtt gaaccttccc 1561 accaacaccc cgttatgtgt tgttgctgtg tgacagatgg cagcagaggg gcagtctgac 1621 agaatggcgt ctcacatgga agtgtgtatg aagcaaaggt gtgtcactga attc // LOCUS CHKX2 210 bp ds-DNA VRT 01-DEC-1982 DEFINITION chicken x gene: exon5 and flanking ivs junctions. ACCESSION J00918 KEYWORDS ovalbumin. SEGMENT 2 of 4 SOURCE chicken dna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 210) AUTHORS Heilig,R., Perrin,F., Gannon,F., Mandel,J.L. and Chambon,P. TITLE the ovalbumin gene family: structure of the x gene and evolution of duplicated split genes JOURNAL Cell 20, 625-637 (1980) STANDARD full staff_review COMMENT Some sequence homologies exist between the x, y, and ovalbumin genes. See other entries, and . FEATURES from to/span description pept / 41 + 183 x protein (exon 5, aa at 43) pre-msg < 1 > 210 VTG II mRNA and intron IVS < 1 40 VTG II intron A IVS 184 > 210 VTG II intron B BASE COUNT 56 a 49 c 46 g 59 t ORIGIN hindiii site about 4500 bases after chkx1 1 actgtgtctt agcactcact gctttgcttc cttcttacag gacagatcaa agatttgctt 61 gtatcaagct ccactgatct tgatacaacg ctggtccttg ttaatgccat ctacttcaaa 121 gggatgtgga agacagcatt taatgcagaa gacactcgag aaatgccctt ccatgtaaca 181 aaggtagggg acgtagtcac cgcttctggg // LOCUS CHKX3 295 bp ds-DNA VRT 01-DEC-1982 DEFINITION chicken x gene: exon6 and flanking ivs junctions. ACCESSION J00919 KEYWORDS ovalbumin. SEGMENT 3 of 4 SOURCE chicken dna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 295) AUTHORS Heilig,R., Perrin,F., Gannon,F., Mandel,J.L. and Chambon,P. TITLE the ovalbumin gene family: structure of the x gene and evolution of duplicated split genes JOURNAL Cell 20, 625-637 (1980) STANDARD full staff_review COMMENT Some sequence homologies exist between the x, y, and ovalbumin genes. see other entries, and . FEATURES from to/span description pept + 69 + 224 x protein (exon 6) pre-msg < 1 > 295 VTG II mRNA and intron IVS < 1 68 VTG II intron B IVS 225 > 295 VTG II intron C BASE COUNT 65 a 73 c 81 g 76 t ORIGIN about 300 bp after chkx2. 1 cttgcacatc tgcctgcttc aagagacact gcccccttct cacattgtct catgcttctg 61 ttttgcagca agaaagcaaa cctgtgcaaa tgatgtgtat gaacaatagc tttaatgtgg 121 ccacactgcc tgcagagaaa atgaagatcc tggagctccc atttgccagc ggagacctga 181 gcatgttggt gctgttgcct gatgaggttt ctgacctgga gcgggtacgg ccctggcagg 241 ggaagccaac tagttcggag ttcagtggga gctggctgct gtcagacctt tggct // LOCUS CHKX4 761 bp ds-DNA VRT 01-DEC-1982 DEFINITION chicken x gene: exon7 and flanking sequences. ACCESSION J00920 KEYWORDS ovalbumin. SEGMENT 4 of 4 SOURCE chicken dna. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 761) AUTHORS Heilig,R., Perrin,F., Gannon,F., Mandel,J.L. and Chambon,P. TITLE the ovalbumin gene family: structure of the x gene and evolution of duplicated split genes JOURNAL Cell 20, 625-637 (1980) STANDARD full staff_review COMMENT Some sequence homologies exist between the x, y, and ovalbumin genes. See other entries, and . FEATURES from to/span description pept + 43 444 x protein (exon 7) pre-msg < 1 > 444 VTG II mRNA and intron IVS < 1 42 VTG II intron C BASE COUNT 243 a 176 c 153 g 189 t ORIGIN about 700 bp after chkx3. 1 cattctcatc acaggcattt tattctctcc ctctcttttc agattgagaa gacaattaac 61 tttgaaaaac tcacagagtg gaccaatccc aatacgatgg agaagaggag agtgaaagtg 121 tacctgcccc aaatgaagat tgaggaaaaa tataacctca catctgtctt aatggcattg 181 ggaatgactg acctgttcat cccttcagcc aatctgactg gcatttcttc agcagagagc 241 ttgaagatat cccaggctgt gcacggggcc ttcatggaac tcagtgaaga tggcattgag 301 atggcaggct ccacaggggt gatagaagac atcaagcatt cccctgagtc tgaacagttt 361 agggctgacc acccattcct cttcctgatc aaacacaacc caaccaacac cattgtctac 421 tttggcagat attggtcccc ttaaagagag aaagagctgg caataacaca taccttcccc 481 tcagaaacaa aatcccctta ctgtagtatt atagcataat cttatctctt tcatagaaaa 541 gacatacccg caggagagga gacagcacga agcacactta ctccttccct tcttgtatta 601 atttcagaat ggcttgatat gagcaaagac tgagccaatg agatggtgag aatgaagaca 661 cctatcagcc attaaggtga taagtgattt tcacccaagg aataaatagt aagaatgacc 721 ctaagtcctt gggagcctgt tacatagaaa gcaataagct t // LOCUS XELIGH 238 bp ss-mRNA VRT 01-MAR-1983 DEFINITION xenopus laevis rearranged ig h-chain mrna, 3' end. ACCESSION J00990 KEYWORDS differentiated gene; immunoglobulin; immunoglobulin heavy chain. SOURCE xenopus laevis adult spleen. ORGANISM Xenopus laevis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae. REFERENCE 1 (bases 1 to 238) AUTHORS Brown,R.D., Armentrout,R.W., Cochran,M.D., Cappello,J. and Langemeier,S.O. TITLE construction of recombinant plasmids containing xenopus immunoglobulin heavy chain dna sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 78, 1755-1759 (1981) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description CDS <1 68 coding sequence immunoglobulin (1 is 2nd base in codon) BASE COUNT 92 a 49 c 54 g 43 t ORIGIN x 1 caagagaaac cagaagtccg aagtacgaaa ggctcaacga gaacaggcaa ttagagctgc 61 caaggaagta aagaaggcta aacgggcaac caaaaaggtt gtccctgtaa aggtaccatc 121 aaagactgta cctaagcaga aaatagccaa gcctgtaaag atgcaggctc cccgtgtcgg 181 tggaaaacgc taaatgaact tcttctgaac attctaataa atgactgttt tgaaaaac // LOCUS XELLHIS3 90 bp ss-mRNA VRT 01-MAR-1983 DEFINITION xenopus laevis h3 histone mrna. ACCESSION J00991 KEYWORDS histone; histone H3. SOURCE xenopus laevis laevis cdna to ovarian mrna. ORGANISM Xenopus laevis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae. REFERENCE 1 (bases 1 to 90) AUTHORS Turner,P.C. and Woodland,H.R. TITLE h3 and h4 histone cdna sequences from xenopus: a sequence comparison of h4 genes JOURNAL Nucleic Acids Res. 10, 3769-3780 (1982) STANDARD simple staff_review BASE COUNT 36 a 20 c 18 g 16 t ORIGIN 1 gatccggggc gagagggctt agatacagct gccacttctc atacgacaac acaaaggttc 61 ttttcagagc cactaaaaaa aaaaaaaaaa //