Path: utzoo!attcan!uunet!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004061443.AA05116@haploid.lanl.gov.LANL.GOV> Date: 6 Apr 90 14:43:09 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 218 Approved: lear@genbank.bio.net Checksum: 11587 14 LOCUS CHKAK1 6300 bp ds-DNA VRT 15-MAR-1989 DEFINITION Chicken cytosolic adenylate kinase (AK1) gene, complete cds and flanks. ACCESSION D00251 KEYWORDS AK1 gene; adenylate kinase; cytosolic adenylate kinase. SOURCE Chicken liver DNA. ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 6300) AUTHORS Suminami,Y., Kishi,F., Torigoe,T. and Nakazawa,A. TITLE Structure and complete nucleotide sequence of the gene encoding chicken cytosolic adenylate kinase JOURNAL J. Biochem. 103, 611-617 (1988) STANDARD full staff_entry COMMENT The chicken AK1 gene spanned about 6 kbp and consisted of 7 exons. The transcription initiation site was determined by the S1 nuclease mapping analysis. Evolution of the AK1 gene is discussed in comparison with the isozyme AK2. corresponds to DDBJ (rel4.0) entry (D00251) dated 12-SEP-1988 FEATURES from to/span description pept 2612 2621 adenylate kinase (a part of exon 2) 4056 4091 adenylate kinase (exon 3) 4478 4641 adenylate kinase (exon 4) 4754 4870 adenylate kinase (exon 5) 5382 5573 adenylate kinase (exon 6) 5689 5754 adenylate kinase (exon 7) pre-msg 1070 5914 AK1 mRNA and introns IVS 1121 2578 AK1 intron a IVS 2622 4055 AK1 intron b IVS 4092 4477 AK1 intron c IVS 4642 4753 AK1 intron d IVS 4871 5381 AK1 intron e IVS 5574 5688 AK1 intron f signal 973 976 CAT box signal 1041 1047 TATA box signal 5896 5901 polyadenylation signal BASE COUNT 998 a 2011 c 1904 g 1387 t ORIGIN 1 bp upstream of BamHI site. 1 ggatcccgat tgcttcagag tccccttggt ttggggtccg ggctgcactg tgcaccccag 61 ggctgataca gcatcagggc cgtgtgcacc gctgctgccc atgggtctgc acagccacga 121 catggcaggt tttagggtgt ctcatcccct cctgcaggac gtgggaaccc tgcatggtcc 181 caactcagaa cctcccaggc tgcgttccat caccctgaga gcacacgggg ggtaggtgaa 241 tggtcccctt tggctggcat gggggtcacg ttgctttggg ggcaaaattt tagccccacc 301 cccccccccc acctgtcccc cagcacaaat cctcacattt tcagtgtcac catccccaga 361 gcagagacct gagagccacc ccagttagac caaggggatg acactgccaa cgtggtgccg 421 ggagggggga ggtggggagg aggggggggg caataccaca cagcagctgc cggaaccttt 481 tgtaacctgg ccatggggcg tggggggatt ttttccctcc tggtcccggt gtttggattc 541 ccactgtgga gcccacgatg ctcatcactc agcagcccct cacgaaccat tcagaagggt 601 ttggacgctg agccccattg ggtggcagcc ccgtgcctca gtttccccct cggccgtggc 661 agcggggggg gggggcgtcc ggtggggtca caccttgggg ggaggggggg gctcagcacc 721 gtgttttgta tcgatttgta caggaataaa cctcgctgca gtctgttgcc ttggaccgtg 781 ctgcgggatg catctctggg gtccgggggg gagggaaagg gaccccgtag gacccccccc 841 catcccgagc ggggctgagg tgggcggttg ggggctgcag gacctcccag ctctacccgt 901 catccgcggg ctcctcccgt tgcgggggcg cggtaccggg gggctgcggg ggggctgcgg 961 gcgggcgggc ggcattgccc ccccccacag tgccccccct ccccgctgcc cgctcccggc 1021 atgccccgcg ccgccagcat tatatatatc tagcggtacg gcagaagctg ccggccagca 1081 gcagccgccc cccccgtatt ctgcaccgcc ccccccgcag gtcagtgccg ccccccccag 1141 ccctgctgct ggtttgcacc gcggttcgtg tcccaacccc cccccccaga tctcccccct 1201 ggtccccccc ggcacagtct cgcggtgacc ttggggaggg cgttccggca tccggcttcg 1261 gggccccccc cgctgccccc cgcccgacca ttctcgcgtg ggggcgagac gcgatcggtc 1321 cgtccccccc tctccgtgcg ttgagctgtg gggatggggg tgcggggggg gggatgtgaa 1381 catcgctgcg ggtgtgcggg acccgggggg ggagaaggga gaggagcggt ggggagcacc 1441 ggggggcatt gcaggggtgc tgtgctattg cggggggtgc tgagctatcg gggggcgccg 1501 gggtgcggcc cttgggctgg agtccccaca tgggaggtgg gtgcgggcaa agcgtgcggt 1561 tggagctcct ggtgggctgc agttctgggg agcaccctgg ggtgcagcac ggcgtgggct 1621 gtgctgggga gtgctgtgcc gcccgctccg tgggcacagc gccacgctgg atcaggccgt 1681 gagcccacca agggctgctg ccaggtgtgc tcggtgcccc cgcgccaggg acccccaggt 1741 tgtgcccttc ctatggggcg atgcagggct cagcctcaaa acgcaagcag gacgtgaccc 1801 ggtgcagatt tcagcccgtc catacttagc ctctgccctt tcccggctgt aacacgacct 1861 gatggatggc cacggcccct tcggccccgg tctggccggt ttggggacag cggggtgacg 1921 tggtgtggct gagcaggtgg ggtgctgcgg ggctgggtgc gggcgggcgg ttatgggtat 1981 ggccaaaccc acagcgagga actggaaggg cagtggggtg cagcagcccc cccttgggca 2041 ccgagaacag gctgacccct taaaaagcat cccctccagc acatggggag ctggaggtac 2101 gtgggatact gcctccgtcc ctcagtgtcc tgctgccatg tgtcaccccg agccaatttc 2161 cggctgccag gcagcacccc gggcatgggg atgtggtcag ggcaggggag ggtgctggga 2221 ttgtcaccgt gcgtcagccc agtgccggca cagggcgggt ggctgccggc agcgaggtag 2281 gcgacggccg caggaagtga ggtcccagct cctggagcca tggaattcag gcagcattgt 2341 gcctttctcg tgtattttag taattttata tatttaagag ccaagctggg gaacggtgct 2401 gctagcaggg gggaaacccc gtcccccagc gtggccctag agctcaattt gagatctgct 2461 ccatcccatc gtggaagcaa agggagagct gttgtcctgg caacgtcctc cccaggccgc 2521 agtgccgggc cccgtgtgtc cctgccgtgc ctctcactct gctctgcttc ccttgcagcc 2581 tgaagtgctc ctccacccag acagcagcag catgtcgaca ggtgagtgct ttgcatctgt 2641 gcctcctgca tccattccct ccatcccctt tgcattcacc cccccttgca cctgatccct 2701 caatccccct tggcatccat cctctccaac ccctgttgcc tccatccctt ttatctcatt 2761 gtgtgtactc aatttttcct ccttgtgtcc atctcctgcg tcctttttgc atttgtcctc 2821 tccgtccctc ttgcatctaa acccttgggc cccctcgtgt ccatcctctg tgtccatctg 2881 ttccctctgt tcctcttgca tctaatccct tagttccctt tgcatccatc catctgtccc 2941 cccatcctcc tatgttgtcc atttgtgtcc atcacttgtg cctcgacatg tccatccctt 3001 ttctccccct tacatctgat ctctcagccc tctgtgcctg tctcccatgt cctctctgta 3061 tctgtcacct ctgtccctct tgcatctgat ccttaggtcc ccttttgtgt ctgtctcatg 3121 ttctctttcc atctatctcc tctgtttccc ttgtatccaa gtcctgaatc tctcatccaa 3181 tccccagagt cccccccttg tgtccatctt ctatgttctc cagtagtgtc tgtctcctct 3241 gtctccccct cgtgtccatt ccgtgtcctc tttccatccc ttccctccat tccccttacc 3301 tgtccccccg ttgcctctgt cccatttctc ccccttgctt ccctccagcc cccacgtact 3361 ccatgtcttc tgcccacccc ccttccccac cagcctcttg gctccctccc atcccggggc 3421 tcaccggctg ctggaggagc tgaaatttca gaagactgag atctggagat ggcagcacgg 3481 ccccagggtg gctcatgtta tttttagcgt cctccctctg cgctgtcaca ccccaacgcg 3541 tggcagggac agatcctgcg gggggggggg gggaatcctg cagggaaaac ccccccgtcc 3601 tatgggctgg agtgctctga gtggatgggg ctatgccatt tctggggaca gtcagatccc 3661 acagggttgt gccatgccgt gccatgctgc accaagcatg actaggagct gaccatgggg 3721 atggttgtgg ctgtccctgc tggttcctat ctctcagtgg ggtcggagaa atgaccgtct 3781 ccaggatgca gtggagttcc aacccctcag ctcaacccct cgtctgccag gacaccatgg 3841 ggtctcagtg cacgagcatg tgcagcttca atcctggact gtctaggtga caggatgaca 3901 ggatgagtgc ttcctactct gccctccctg gggttggggt tggtccccac cactcctcgt 3961 tcagtcctgc cactggggac agttttctcc ctggtgtaac ttctggcttt tagatttatt 4021 gttgtttgtt ttttttttct ctctctctcc accagaaaaa ctgaagcacc acaagatcat 4081 cttcgtggtg ggtaagtggg tgtgggacag aggtggccgg tgtggggtgt gctgggacca 4141 gcagggtcta gcaaagcttg ggatgccagc atccaatgtg atgtgatggc aaactcctgg 4201 gggtggtgtc atgggtgctt gatggggcgg tgatgtccag ggtaccatca ggagagtgat 4261 gtctgggata ttggtcatgg tgcctctggt gccatcagag caatgatgcc caggtgccaa 4321 tggccaatca gccacaccag cagcccatgc cgccccaaca gctctttcca tccatcctgt 4381 ctcctctcat caggctttga tgggtctggg ctgccgctcc tcctaccccc actagatggg 4441 gcatgggaca tgacggtggc cctggtgtga cttgcaggtg gccccggctc agggaagggg 4501 acgcaatgcg agaagattgt gcacaagtat gggtacactc acctctccac tggggacctg 4561 ctccgggcag aggtcagctc gggctcagag cggggcaaga agctgcaagc catcatggag 4621 aagggcgagc tggttcccct ggtgagtttg tggtcatgaa cacagggtga tgtggggaca 4681 ctgtggtgat gcagcagcag gaatggggca cgtcgtccca catcaccctg acagctgtat 4741 gccccctccc caggacacgg tgctggacat gctgcgggac gccatgttgg ctaaggcaga 4801 cacctccaag ggtttcctca ttgacggcta ccctcgcgag gtgaagcagg gagaggagtt 4861 tgaaaagaag gtgagggccg ttcccctggt gagtgccgtg cggtgttatg ttgtgccacc 4921 ctccgtctgc ggcctatgcg gtgctggcca atggtgaggc cttgtcggct tcactgcagc 4981 ctcagcccag ccctggcgtc agccacagca gggcacggtg gcaggggaca tctatccagg 5041 ctgccctcag gcctggggca gtggcagaga gccaaggcct gtcccctggt gggtgccatg 5101 ccacagtgtg ttgtgtcatc ctccatctgc ggcctacatg gtgatggcac tatgtgaggc 5161 ctagtcaggc ttcactgcgg cctacaggcc tacgccctgg ggacccccta tagtgggatg 5221 cggtggcagg ggacgtctgt ctgggctgca cccagggctg gcagagggtg actggggtga 5281 tggccacgct gtcccctcct tgccggtgtc acacctccag ccccacctgg aggagacgtg 5341 gggacaccca gacccacatg gtgacagctg tgtccccaca gattgccccc cccacgctgc 5401 tgctctacgt ggatgcgggg aaggagacga tggtgaagcg gctgctgaag cggggagaga 5461 ccagcgggcg ggtggacgac aacgaggaga ccatcaagaa gcgcttggag acgtactaca 5521 aggctaccga acccgtcatc gccttctaca agggccgggg catcgtccgc caggtgagcg 5581 gggtacaggg aggggggaag caatacatgg gggtaacaga gctgccagct gccccccctt 5641 ccccccagca ttgctgaggg aaccagcacc ccgtcactgt ccccacagct gaatgccgag 5701 ggcaccgtgg atgaggtttt ccagcaggtc tgctcctacc tcgacaagct gtgacggccc 5761 cgcgcccccc accctgcgct ccccccacac gcgcagggca gagacagcgg aagtggcctt 5821 atcctgtttt cgtggacaga gccgcgcgaa ggaaatttca aggacattgt gtttggctct 5881 ttcccgtctc tccccagtaa agttcacttt aatgagccca gactttatct ttttcttctg 5941 tcgcaggaaa tgagtttttc tttccagaga tttttgtttc tagcctcccc ccaccccccc 6001 tcagccagcc cctctctgaa gctgataaag ggcaggaagc gggtgtttat cccggctgag 6061 atgcagcggg cccgggggat gcttggagga aggcaggaga tcccggctgc ttcgcctggg 6121 gccttggtgt cctggccctg tcctgctccc cccaacccga tctcattcct gtgctcctgt 6181 ctctgcatgc gcctggggca gcatcccacc ccatccctcc tcctcatccc atcagatggt 6241 gatttccacc ccttccacca cttcctcgct gcttttgtcc attggggtgt tttgggatcc // LOCUS CHKBGBL3 192 bp ds-DNA VRT 15-MAR-1990 DEFINITION Chick 14K beta-galactoside-binding lectin gene, exon 3. ACCESSION D00310 KEYWORDS 14K lectin; beta-galactoside-binding lectin; chick 14K beta-galactoside-binding lectin; lectin. SEGMENT 3 of 4 SOURCE A library of chick genomic fragments in lambda-EMBL3 provided by J. D. Engel (Northwestern University). ORGANISM Gallus gallus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 192) AUTHORS Ohyama,Y. and Kasai,K. TITLE Isolation and characterization of the chick 14K beta-galactoside- binding lectin gene JOURNAL J. Biochem. 104, 173-177 (1988) STANDARD full staff_entry COMMENT The mRNA for the lectin is encoded by four exons. The first exon encodes only three amino acid residues and the other three exons encode, respectively, one of the three repeating sequences found in this lectin. FEATURES from to/span description pept + 11 + 182 14K beta-galactoside-binding lectin, exon 3 (AA 31 at 12) IVS < 1 10 14K beta-galactoside-binding lectin, intron 2 IVS 183 > 192 14K beta-galactoside-binding lectin, intron 3 BASE COUNT 49 a 48 c 52 g 43 t ORIGIN About 1.2 kb after segment 2. 1 ttctctgcag ctttgtgatg aatctgggca aggactcaac ccacctgggg cttcacttca 61 acccccgctt tgatgctcac ggtgatgtga acctcattgt gtgcaactca aagaaaatgg 121 aagagtgggg taccgagcaa agggagacgg tcttcccttt ccagaaggga gccccaatag 181 aggtaaagcc tg // LOCUS XELPRL5B 986 bp ss-mRNA VRT 15-MAR-1990 DEFINITION X.laevis ribosomal protein L5b 60 S subunit mRNA, complete cds. ACCESSION M29033 KEYWORDS 5S ribosomal RNA binding protein; nucleolar protein; ribosomal protein. SOURCE X.laevis stage 17 embryo, cDNA to mRNA, clone L5b. ORGANISM Xenopus laevis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae. REFERENCE 1 (bases 1 to 986) AUTHORS Wormington,W.M. TITLE Developmental expression and 5S rRNA-binding activity of Xenopus laevis ribosomal protein L5 JOURNAL Mol. Cell. Biol. 9, 5281-5288 (1989) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by M.Wormington, 14-OCT-1989. FEATURES from to/span description pept 53 943 L5b ribosomal protein mRNA < 1 > 986 L5b mRNA BASE COUNT 309 a 200 c 252 g 225 t ORIGIN 1 gttagggctg tgactctccg gtcctagccc cgacggctca aaatagagca aaatggggtt 61 cgtaaaggtc gtcaagaaca aggcttattt taagaggtac caggtcaagt tccgcagaag 121 gagagagggc aagaccgatt actatgctcg caagcgactg gtgatccagg ataagaacaa 181 gtacaatact cccaagtaca ggatgattgt acgtgtcacc aacagagaca tcatctgcca 241 gattgcttat gctaggattg agggagacat gattgtatgt gctgcttatg ctcatgagct 301 tcccaagtat ggtgtcaaag ttgggctgac aaactatgct gcagcatatt gtactggcct 361 gctgctggct cgtaggcttc tcaacaaatt cggtctggac aaagtatacg aaggtcaagt 421 ggaagtaaca ggagatgagt acaatgtaga gagcgttgat ggtgaacctg gtgcctttac 481 atgctacctt gatgccggcc tcaccagaac caccactgga aacaaagttt ttggtgctct 541 taagggagct gtggatggag gtttatctat tccacacagt accaagcgat tccctggcta 601 tgactctgaa agcaaagaat tcaatcctga ggtccaccgc aagcacatct tcgcccagaa 661 tattgcagag tacatgcgtc ttctgatgga agaagatgaa gatgcatata aaaaacagtt 721 ctcccagtac ataaagaatg gtgtcgcagc agatcagttg gaagacatat acaaaaaggc 781 tcatgcaggt attcgggaga atccagtgca cgaaaagaaa cccaagaagg aagtcaaaaa 841 gaagaggtgg aaccgtgcca aattgtctct ggaacagaaa aaggaccgtg ttgctcagaa 901 aaaagccagt ttcctcagag ctcaggagaa ggcagacagc taaatggatt atgttgcgat 961 tttctaagtg ttgtcagcaa aaaaat //