Path: utzoo!attcan!uunet!tut.cis.ohio-state.edu!zaphod.mps.ohio-state.edu!uwm.edu!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004061455.AA05387@haploid.lanl.gov.LANL.GOV> Date: 6 Apr 90 14:55:43 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 341 Approved: lear@genbank.bio.net Checksum: 17191 21 LOCUS DRMMTTRND 976 bp ds-DNA ORG 15-JUN-1989 DEFINITION D.mauritania Trp-tRNA, Cys-tRNA, Tyr-tRNA, NADH dehydrogenase subunit 2 (3' end) cytochrome oxidase subunit 1 (5' end) genes. ACCESSION M18073 KEYWORDS NADH dehydrogenase; cytochrome oxidase; transfer RNA-Cys; transfer RNA-Trp; transfer RNA-Tyr. SOURCE D.mauritania (adult, from Mauritius Island) mitochondrial DNA. ORGANISM Mitochondrion Drosophila mauritania Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae; Drosophila mauritiana. REFERENCE 1 (bases 1 to 976) AUTHORS Satta,Y., Ishiwa,H. and Chigusa,S.I. TITLE Analysis of nucleotide substitutions of mitochondrial DNAs in Drosophila melanogaster and its sibling species JOURNAL Mol. Biol. Evol. 4, 638-650 (1987) STANDARD simple staff_entry COMMENT Draft entry and printed copy of sequence for [1] kindly provided by Y.Satta, 04-FEB-1988. FEATURES from to/span description ORF < 1 461 NADH dehydrogenase subunit 2 (AA at 1; ta stop codon) ORF 668 > 976 cytochrome oxidase subunit 1 (gta start codon) tRNA 461 526 Trp-tRNA tRNA 580 519 (c) Cys-tRNA tRNA 666 601 (c) Tyr-tRNA BASE COUNT 348 a 105 c 96 g 427 t ORIGIN Unreported. 1 tctttaataa ttagagaatc aatttgactt atttattttt ttttttattc atttttatca 61 tttgtattaa catttatatt taatattttt aaattatttc atttaaatca attattttct 121 tgatttgtaa acagaaaaat tttaaaattt acattattta taaatttttt atcattagga 181 ggattacctc catttttagg atttttacct aaatgacttg taattcaaca attaacatta 241 tgtaatcaat attttttatt attattaata ataatatcaa ctttaattac attatttttt 301 tatttacgaa tctgttattc tgcttttata ataaattatt tcgaaaataa ttgaatcata 361 aagataaata taattagtag taatactaat atatatttaa ttataacttt tttttcaatt 421 tttggattat ttataatttc tttattttat tttatatttt aaggctttaa gttaataaaa 481 ctaataacct tcaaagctat aaataaagaa atttctttaa gccttagtaa aaattactcc 541 ttcaaaattg cagtttgata tcattattga ctataagacc taataaaatt tgtccttatt 601 tgattaagaa gaataaatct tataaataga tttacaatct atcgcctaaa cttcagccac 661 ttaatcagta accgcgacaa tgattatttt ctacaaatca taaagatatt ggaactttat 721 attttatttt tggagcttga gctggaatag ttggaacatc attaagaatt ttaattcgag 781 ccgaattagg acatcctgga gcattaattg gagatgacca aatttataat gtaattgtaa 841 ctgcacatgc ttttattata atttttttta tagttatacc tattataatt ggtggatttg 901 gaaattgatt agtaccttta atattaggtg ctcctgatat agcattccca cgaataaata 961 atataagatt ttgatt // LOCUS DROMTTRND 975 bp ds-DNA ORG 15-JUN-1989 DEFINITION D.melanogaster Trp-tRNA, Cys-tRNA, Tyr-tRNA, NADH dehydrogenase subunit 2 (3' end) cytochrome oxidase subunit 1 (5' end) genes. ACCESSION M18022 KEYWORDS NADH dehydrogenase; cytochrome oxidase; transfer RNA-Cys; transfer RNA-Trp; transfer RNA-Tyr. SOURCE D.melanogaster (adult, from Sapporo, Japan) mitochondrial DNA. ORGANISM Mitochondrion Drosophila melanogaster Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae; Drosophila melanogaster. REFERENCE 1 (bases 1 to 975) AUTHORS Satta,Y., Ishiwa,H. and Chigusa,S.I. TITLE Analysis of nucleotide substitutions of mitochondrial DNAs in Drosophila melanogaster and its sibling species JOURNAL Mol. Biol. Evol. 4, 638-650 (1987) STANDARD simple staff_entry COMMENT Draft entry and printed copy of sequence for [1] kindly provided by Y.Satta, 04-FEB-1988. FEATURES from to/span description ORF < 1 461 NADH dehydrogenase subunit 2 (AA at 1; ta stop codon) ORF 667 > 975 cytochrome oxidase subunit 1 (ata start codon) tRNA 461 526 Trp-tRNA tRNA 580 519 (c) Cys-tRNA tRNA 665 600 (c) Tyr-tRNA BASE COUNT 345 a 101 c 97 g 432 t ORIGIN Unreported. 1 tctttaataa ttagagaatc aatttgatta atttattttt ttttttattc atttttatca 61 tttgtattaa catttatatt taatattttt aaattatttc atttaaatca attattttct 121 tgatttgtta atagaaaaat tttgaaattt acattattta taaatttttt atcattagga 181 ggattacctc catttttagg atttttacca aaatgacttg taattcaaca attaacatta 241 tgtaatcaat attttatatt aacaattata ataatatcaa ctttaattac attatttttt 301 tatttacgaa tttgttattc cgcttttata ataaattatt ttgaaaataa ttgaatcata 361 aagataaata taaatagtat taattataat atatatataa ttataacttt tttttcaatt 421 tttggattat ttttaatttc tttattttat tttatatttt aaggctttaa gttaataaaa 481 ctaataacct tcaaagctat aaataaagaa atttctttaa gccttagtaa aacttactcc 541 ttcaaaattg cagtttgata tcattattga ctataagacc taattaattt gtccttattt 601 gattaagaag aataaatctt atatatagat ttacaatcta tcgcctaaac ttcagccact 661 taatcaataa tcgcgacaat gattattttc tacaaatcat aaagatattg gaactttata 721 ttttattttt ggagcttgag ctggaatagt tggaacatct ttaagaattt taattcgagc 781 tgaattagga catcctggag cattaattgg agatgatcaa atttataatg taattgtaac 841 tgcacatgct tttattataa ttttttttat ggttatacct attataattg gtggatttgg 901 aaattgatta gtgcctttaa tattaggtgc tcctgatata gcattcccac gaataaataa 961 tataagattt tgact // LOCUS DRSMTTRND 975 bp ds-DNA ORG 15-JUN-1989 DEFINITION D.simulans Trp-tRNA, Cys-tRNA, Tyr-tRNA, NADH dehydrogenase subunit 2 (3' end) cytochrome oxidase subunit 1 (5' end) genes. ACCESSION M18072 KEYWORDS NADH dehydrogenase; cytochrome oxidase; transfer RNA-Cys; transfer RNA-Trp; transfer RNA-Tyr. SOURCE D.simulans (adult from Nairobi, Kenya) mitochondrial DNA. ORGANISM Mitochondrion Drosophila simulans Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae; Drosophila simulans. REFERENCE 1 (bases 1 to 975) AUTHORS Satta,Y., Ishiwa,H. and Chigusa,S.I. TITLE Analysis of nucleotide substitutions of mitochondrial DNAs in Drosophila melanogaster and its sibling species JOURNAL Mol. Biol. Evol. 4, 638-650 (1987) STANDARD simple staff_entry COMMENT Draft entry and printed copy of sequence for [1] kindly provided by Y.Satta, 04-FEB-1988. FEATURES from to/span description ORF < 1 461 NADH dehydrogenase subunit 2 (AA at 1; ta stop codon) ORF 667 > 975 cytochrome oxidase subunit 1 (gtg start codon) tRNA 461 526 Trp-tRNA tRNA 580 519 (c) Cys-tRNA tRNA 665 600 (c) Tyr-tRNA BASE COUNT 343 a 107 c 102 g 423 t ORIGIN Unreported. 1 tctttaataa ttagagaatc agtttggttt atttattttt ttttttattc atttttatca 61 tttgtattaa catttatatt taatattttt aaattatttc atttaaatca attattttct 121 tgatttgtaa atagaaaaat tttaaaattt acattattta taaatttttt atcattggga 181 ggattacccc catttttagg atttttacca aaatgacttg taatccaaca attaacatta 241 tgtaatcaat attttttatt attaataata ataatatcaa ctttaattac attatttttt 301 tatttacgaa tttgttattc tgcttttata ataaattatt tcgaaaataa ttgaatcata 361 aagataaata taattagtat taatactaat atatatttaa ttataacttt tttttcaatt 421 tttggattat ttataatttc tttattttat tttatatttt aaggctttaa gttaataaaa 481 ctaataacct tcaaagctat aaataaagaa atttctttaa gccttagtaa aaattactcc 541 ttcaaaattg cagtttgata tcattattga ctataagacc taataaaatt gtccttattt 601 gattaagaag aataaatctt ataaatagat ttacaatcta tcgcctaaac ttcagccact 661 taatcagtga ccgcgacaat gattattttc tacaaatcat aaagatattg gaactttata 721 ttttatcttt ggagcttgag ctgggatagt cggaacatca ttaagaattt taattcgagc 781 cgaattagga catcctggag cattaatcgg agatgatcaa atttataatg taattgtaac 841 tgcacatgct tttattataa ttttttttat agttatacct attataattg gtggatttgg 901 aaattgatta gtgcctttaa tattaggtgc ccctgatata gcattcccgc gaataaataa 961 tataagattt tgatt // LOCUS RICMTB1 2135 bp ds-DNA circular ORG 15-MAR-1989 DEFINITION Oryza sativa (rice) Mitochondrial plasmid-like DNA (B1), complete sequence. ACCESSION D00293 KEYWORDS cytoplasmic male sterility; mitochondrial DNA; mitochondrial plasmid. SOURCE Cytoplasmic male-sterile rice line (A-58CMS), mitochondrial plasmid-like DNA (B1). ORGANISM Mitochondrion Oryza sativa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae; Oryza sativa. REFERENCE 1 (bases 1 to 2135) AUTHORS Shikanai,T., Yang,Z.-Q. and Yamada,Y. TITLE Properties of the circular plasmid-like DNA B1 from mitochondria of cytoplasmic male-sterile rice JOURNAL Plant Cell Physiol. 28, 1243-1251 (1987) STANDARD full staff_entry COMMENT The complete nucleotide sequence of B1 (2,135bp) which is a plasmid-like minicircular DNA in the mitochondria of Oryza sativa A-58CMS was found to contain sequences homologous to those in the 1,913bp plasmid-like DNA of maize, and therefore, this sequence may have originated from the nuclear genome. The number 2014 described under the result section as the beginning of ORF seems to be wrong number. According to the sequence map, correct number should be 2019. corresponds to DDBJ (rel4.0) entry (D00293) dated ORG FEATURES from to/span description ORF 1793 2035 open reading frame ORF 2019 1732 (c) open reading frame (comp strand) BASE COUNT 545 a 494 c 449 g 647 t ORIGIN 3 bp downstream of EcoRI site. 1 ttcaggattg gctaaggctc tagccattaa atgtgactgg ggttgatcca agggctggtc 61 tcatggtttt gactaggtgt ttctcaaatt tctgatcata tttcctgtcg ttataacccc 121 caaaatacgc taactcgcag ctcgaagttc ccagttacat gggcaaccct actcactata 181 catagggtgt gaagagacgg acaacaatag tctttctctg ctttcactcg agccaaacta 241 agtgttttct aggattggcc ccaaagccat actatggtca caacggtaac cccctcgatt 301 tagtttatcc aatcaatcga gaggcagcat ctctatcaat tactcggatc ggcaacctcg 361 gttctggaat gtggacttca ctgaccagcc gcctcttagt ccacacccaa cttggaagtg 421 ttattgattc gttagtaacc ttcgccatcc taatacccga gactgtagtg ttctaagttg 481 gttaaagccg tcgtctcctg ggatgcccgg ctggtcgggc aagtattagt gaaacggctc 541 cgcgcaatca ataactaccc tgcttaggta tgagcttcca agtcccgaat ccttttgtct 601 caagtctgcc ttggtaatgt gaccacacat cctttgatga tggaagtgtt gtttcccaac 661 aatccacccc ggaatcctag ttggagtaat gtatccctac atactatcgc gctaatgtaa 721 tcgggttctc agatcatact caatgagggg tggctagtat cccgaaactt tgaagaacat 781 gagttaagta gttcattcac ttggtttcgc caccagtcaa aacgccctaa aacccagtag 841 gttttctcga tcaccattct acgattttat ttccacctgt tttagaacac ataaattgtg 901 ctacccttaa gagtttatca ctaaaatcaa gaactttatt tatgacctgt aagttgcctc 961 ataaaaagta gatgttagta cccgactaaa aggagggaat caaataaaag gtaaagctct 1021 caattaaaat aaaaagctat cgtttacttt gttaagggta tattgcccgt agcgaggtta 1081 aggtaaaccc ttgaccgagt gaaggcgagc ccggtaaagc actaagtgta ttggctagct 1141 tgtactttat tagctatcaa gtgtttgatg taccaattac tttattgtgt caactagttt 1201 attgaatgca aaggtaattc cctcgataat tgatttaatt atcaagaaag agaattagtt 1261 accctccttc cctcgagctg agctatttct tgtgtattca atcgtatgca cgagggctgt 1321 cctctcctct gctctatctc ccggacaggt atgaaagtcg taattctttg ggtttttgta 1381 gtcaatggaa tgagcggagg gagacacatc cttccatcca aaggtgtgtg tgtcccgtag 1441 cgagtggaat ggctggttcg gtctagtcgt atagaacggg ttgagttctt tttactgagt 1501 cctttcgagg ctggaagtgt ttcttacagt ttccttttcc gaagggaaag tcaagtagta 1561 taaactagta ctaagtccaa gaagaagggg tgaaaagtga ggagggcgat tagcccgatc 1621 cacttgaggg gaggaaggcc ttccttccct actaatagta ccaattcata attcctattc 1681 gtaataaatt catatttatt tggaaaaata tgaaaactaa ttatctttat tctagttccc 1741 taaaaccctt tccgtgccac tcctttctgt tccactcatc caacattgtt ggatgccaaa 1801 gactttgacg aagactttcg tacctgtatt tctgtccggt atgacgtcgc tttcgtgtcg 1861 gcatagcgtg ccccagttgc cacagttgct aggctgttca gagtcctctc ggaccccggc 1921 taggcatcct cccggtaatg ccaggggctg cttcaagaaa cgggtgatgt gggttccaat 1981 cattcttggt ttggttcctc ggcaccaagc caatcccatt cctttccgct ggtgaccgcc 2041 ttcttgttgc ctaccttttt aacccctgta gtaaccccaa gtccaagtac aaggcatacg 2101 tgctccttta atatgcttgc tcctcttttc ttgaa // LOCUS TOBCPNPLR 93 bp ds-DNA ORG 15-MAR-1990 DEFINITION Tobacco chloroplast 23S rDNA and lincomycin resistant mutants. ACCESSION X13526 KEYWORDS 23S ribosomal RNA; antibiotic resistance; lincomycin resistance; ribosomal RNA. SOURCE tobacco (Chloroplast Nicotiana plumbaginifolia). ORGANISM Chloroplast Nicotiana plumbaginifolia Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Solanales; Solanaceae; Nicotiana plumbaginifolia. REFERENCE 1 (bases 1 to 93) AUTHORS Cseploe,A., Etzold,T., Schell,J. and Schreier,P.H. TITLE Point mutations in the 23 S rRNA genes of four lincomycin resistant Nicotiana plumbaginifolia mutants could provide new selectable markers for chloroplast transformation JOURNAL Mol. Gen. Genet. 214, 295-299 (1988) STANDARD simple automatic COMMENT EMBL features not translated to GenBank features: key from to description MUTANT 22 22 g is a in LR400 MUTANT 48 48 a is g in LR415 MUTANT 49 49 a is g in LR421 MUTANT 49 49 a is g in LR446 FEATURES from to/span description rRNA < 1 > 93 23S ribosomal RNA BASE COUNT 23 a 22 c 25 g 23 t ORIGIN 1 tgaaatagac atgtctgtga agatgcggac tacctgcacc tggacagaaa gaccctatga 61 agcttcactg ttccctggga ttggctttgg gcc // LOCUS VFACPTG 1409 bp ds-DNA ORG 15-SEP-1989 DEFINITION Broad bean (V.faba) chloroplast Leu-tRNA-CAA, Leu-tRNA-UAA and Phe-tRNA genes. ACCESSION M23771 KEYWORDS transfer RNA-Leu; transfer RNA-Phe. SOURCE Broad bean (V.faba) chloroplast DNA, clone Bam6a. ORGANISM Chloroplast Vicia faba Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea; Vicia faba. REFERENCE 1 (bases 1 to 1409) AUTHORS Bonnard,G., Weil,J.-H. and Steinmetz,A. TITLE The intergenic region between the Vicia faba chloroplast Leu-tRNA-CAA and Leu-tRNA-UAA genes contains a partial copy of the split Leu-tRNA-UAA gene JOURNAL Curr. Genet. 9, 417-422 (1985) STANDARD simple staff_entry FEATURES from to/span description tRNA 15 95 Leu-tRNA-CAA tRNA 539 573 Leu-tRNA-TAA, exon 1 1025 1074 Leu-tRNA-TAA, exon 2 tRNA 1185 1257 Phe-tRNA BASE COUNT 506 a 240 c 238 g 425 t ORIGIN 1 bp upstream of BglII site. 1 agatctcaat attatgcctt gaagaggact cgaacctcca cgctgtttag cacgagattt 61 tgagtctcgc gtgtctacca tttcaccacc aaggcatcct taaagggaat catattctct 121 gaatatgata tctatcttat gtcatggttc aatattatta tactccaatt ctaatccaat 181 tgcaacatag aatacaacat ctcaaataga atacaacatc tcaaatagaa tacggtacga 241 tataatacag tatctactat ataatacagc gagaatagaa ttctttctcg actaaataaa 301 tatagcttct agatgaacga aaagctagtc aaagggtcga ttcaaaattg gtagacgcta 361 cggacttaat tgtattgagc tttggtatgg aaacatagta atgttaagtg aaaacataac 421 ataatataat acagcatcta ctatataata caacatgtac tatataatac agcgagaaga 481 gaattctttc tcgactaaat aaatatagct tctagatgaa cgaaaagcaa gtcaaacggg 541 ggatatggcg aaattggtag acgctacgga cttaattgta ttgagccttg gtatggaaac 601 atattaagtg aaaactttca aattcagaga aaccctagaa ttttaaatgg gcaatcctga 661 gccaaatcct tctttccgaa aacaaaaaac taaaagttca gaaaaaaagg ataggtgcag 721 agactcaatg gaagctattc taacaaatgg agttgacaac attcaattga ttaatgaaga 781 tttctaactt ctatttgtaa attgtaacta ttttttttag ttttgattcg atcacaattg 841 aaacgaaaca ttagaatcaa atcaattcca actggaagaa aaaatggtga atattcattg 901 atcaaatcag tcactccacc aaaatatgat ggatcttttg aataactgat taatcagacg 961 agaataaaga tagagtccca ttctacatgt caataccgac atcaatgaaa gttttagtaa 1021 tcggaaaatc cgtcgacttt aaaaatcgtg agggttcaag tccctctatc cccaaaagcc 1081 gattgaattt gctcattttt atggcccttt cccttttttt tattgagttg acatagactc 1141 aagtaatttc cctcaaatta ggatggtgcg tcaagatttt aatggtcggg atagctcagc 1201 cggtagagca aaggactgaa aatccttgtg tcaccagttc aaatctggtt cccggcgact 1261 cattatgtat gagtatctat tcccatattt cttttcaaaa atcaaatatt gggaggaata 1321 gatacatatt gattagtggt cttaataatt atacataatt tatctaggcg tacagagata 1381 tgctctttct agatgaaaaa ggaatcgat // LOCUS WHTCPTAREP 781 bp ds-DNA ORG 15-MAR-1990 DEFINITION Wheat chloroplast dispersed repeat (9) DNA for nonfunctional rpl23' homologue segment (located in large single-copy region LSCR). ACCESSION X12849 KEYWORDS pseudogene; rbcL gene; repetitive sequence; ribosomal protein; ribosomal protein L23; ribulose bisphosphate carboxylase. SOURCE wheat (Chloroplast Triticum aestivum). ORGANISM Chloroplast Triticum aestivum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae; Triticum aestivum. REFERENCE 1 (bases 1 to 781) AUTHORS Bowman,C.M., Barker,R.F. and Dyer,T.A. TITLE In wheat ctDNA, segments of ribosomal protein genes are dispersed repeats, probably conserved by nonreciprocal recombination JOURNAL Curr. Genet. 14, 127-136 (1988) STANDARD simple automatic COMMENT *source: clone=pTacE8. see x12850 for repeat 9 in functional rpl23 gene; see x12848 for maize chloroplast repeat 9 in rpl23' homologue EMBL features not translated to GenBank features: key from to description INVREP 214 228 inverted repeat A INVREP 234 249 inverted repeat A' RPT 268 276 direct repeat 1 RPT 297 301 direct repeat 2 RPT 302 306 direct repeat 2 RPT 313 318 direct repeat 3 SITE 377 678 rpl23' nonfunctional segment INVREP 377 384 inverted repeat B INVREP 385 392 inverted repeat B' RPT 606 614 direct repeat 1 RPT 631 635 direct repeat 2 RPT 636 640 direct repeat 2 RPT 645 650 direct repeat 3 FEATURES from to/span description pept < 1 93 rbcL gene product (AA at 1) BASE COUNT 302 a 105 c 141 g 233 t ORIGIN 1 gcttgcaaat ggagtcctga actagccgca gcttgtgaag tatggaaggc gatcaaattc 61 gagttcgagc cggtagatac tattgataag tagataaaac taaagataaa gaagagaagg 121 tataaataaa aaagaaacga aataaaaaga gaaaaaaata agttatgaaa tgcagtaatc 181 ttctttattc ttctaattga ttgcaattaa actcggctca atcttttttt tctaaaaaag 241 attgagccga ataaaaatag atcatgatat gatcatgaga cttgacaaat cgagattcgt 301 ctattctata tatctagaat atatatatta aggtataata caataatgaa atacaaataa 361 aataataaaa tatagtatta tcatatgata attgaatcaa atacgcagta tttactgaaa 421 taagtcttcg tttattgggt ttgaatcaat atacttttaa tgtcgaatgg gattcactaa 481 gactgaaata aagcattggg tcgtactctt ctttggtgtt aaggtggtag ctgtgtatag 541 ccatcgacta cctagaaagg taaaagaata ggacctattc tgggccatac aatgcattac 601 agacgtatga tcattaccct tcaaccgggt tattctattc cacttctaga tagagaaaaa 661 aactaaagga gaatgaatga aaaaagacat agtttggaag ttagaccttt ttataggact 721 ctctttcaat ttcaaaaaag aggacgtttg aaacttttaa caggcgtaat cgtgagtcaa 781 c //