Path: utzoo!attcan!uunet!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004062138.AA28550@life.lanl.gov.LANL.GOV> Date: 6 Apr 90 21:38:19 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 129 Approved: lear@genbank.bio.net Checksum: 62887 9 LOCUS CHBSSRNA 1504 bp ss-RNA RNA 01-FEB-1990 DEFINITION C.limicola ribosomal RNA small subunit. ACCESSION M31769 KEYWORDS ribosomal RNA; ribosomal RNA small subunit. SOURCE C.limicola (strain ATCC 8327) RNA. ORGANISM Chlorobium limicola Prokaryota; Bacteria; Gracilicutes; Anoxyphotobacteria; Green bacteria; Green sulfur bacteria. REFERENCE 1 (bases 1 to 1504) AUTHORS Woese,C.R. JOURNAL Unpublished (1990) Microbiol. Dept. U. of IL., Urbana, IL. 61801 STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by C.R.Woese, 01-FEB-1990. FEATURES from to/span description rRNA 1 1504 ribosomal RNA small subunit BASE COUNT 396 a 334 c 437 g 311 t 26 others ORIGIN 1 nnncaacgga gagtttgatc ctggctcagg acgaacgctg gcggcgtgcc taacacatgc 61 aagtcaaagg aaagtttctt cggaaataag tacttggcgc aagggtgagt aaggcatagg 121 taatctgccc tttggactgg cataaccccg agaaatcggg gacaatacca gatgatgcag 181 cggaaccgca tggttatgtt gttaaatgat ttatcgccaa aggatgagcc tatgttccat 241 caggtagttg gtagggtaac ggcctaccaa gccaacgacg gatagctggt ctgagaggat 301 gatcagccac attggaactg agacacggtc cagactccta cgggaggcag cagtgaggaa 361 tattgcgcaa tgggcgaaag cctgacgcag caacgccgcg tggatgatga agttcttcgg 421 aatgtaaaat ccttttgctg gggacgaata ggtcggcttg ccgactctga cggtacccag 481 cgaataagcc acggctaact ctgtgccagc agccgcggtg atacaggggt ggcaagcgtt 541 gtccggattt actgggtgta aagggtgcgc aggcggactg ataagtcggg ggttaaatcc 601 atgtgctcaa cacatgcacg gcttccgata ctgtcagtct tgagtctcga agaggaagat 661 ggaatttccg gtgtaacggt ggaatgtgta gatatcggaa agaacaccag tggcgaaggc 721 agtcttctgg tcgagtactg acgctcaggc acgaaagcgt ggggagcaaa caggattaga 781 taccctggta gtccacgccg taaacgatga atactagatg ttggtcatat tgatcagtgt 841 cgcagctaac gcattaagta ttccacctgg gaagtacgcc cgcaagggtg aaactcaaag 901 gaattgacgn nnnccngcac aagcggtgga tcatgtggtt taattcgatg caacgcgaag 961 aaccttacct aggcttgaaa tgttagctaa agctcctgaa agggagcgtc cttcggggag 1021 ctagcacagg tgctgcatgg ctgtcgtcag ctcgtgtcgt gagatgttgg gttaagtccc 1081 gcaacgagcg caacccctac aattagttac taacaggtta agctgaggac tctaattgaa 1141 ctgcctacgc aagtagagag gaagganggg atgacgtcaa gtcctcatgg cccttacgcc 1201 tagggccaca cacgtgatac aatggcgact acagagggca aagccgcgag gcagaggaaa 1261 tcccttaaaa gtcgtctcag tccggatcgg agtctgcaac tcgactccgt gaagttggaa 1321 tcgctagtaa tcgcggatca gcatgccgcg gtgaatgtgt tcccgggcct tgtacacacc 1381 gcccgtcaag tcatggaagt caggagtacc caaagacgtc cgcgcgttta aggtaagact 1441 ggtaactggg actaagnngt aacaagnnnn nngtaccgga agnnnnnnnn ngatcacctc 1501 cttt // LOCUS ECOSPEA 3236 bp ds-DNA BCT 01-FEB-1990 DEFINITION E.coli arginine decarboxylase (speA) gene, complete cds, agmatinase (speB) and methionine adenosyltransferase (metK) genes, 5' end. ACCESSION M31770 KEYWORDS agmatinase; arginine decarboxylase; metK gene; methionine adenosyltransferase; speA gene; speB gene. SOURCE E.coli (strain K12) DNA, clones pLC2-5 and lambda-[1H10,23G45]. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 3236) AUTHORS Moore,R.C. and Boyle,S.M. TITLE Nucleotide sequence and analysis of the speA gene encoding arginine decarboxylase of Escherichia coli JOURNAL Unpublished (1990) Virginia S. Uni. Vet. Med., Blacksburg, VA 24061 STANDARD full staff_review COMMENT Draft entry and computer-readable sequence [1] kindly submitted by R.C.Moore, 02-FEB-1990. FEATURES from to/span description pept 192 < 1 (c) methionine adenosyltransferase (metK) pept 987 2963 arginine decarboxylase (speA) (EC 4.1.1.19) pept 3101 > 3236 agmatinase (speB) signal 3009 3022 rho-independent transcription terminator signal 811 816 -35 signal signal 839 844 -10 signal binding 977 980 ribosome binding site site 1878 1886 pyridoxal phosphate binding site (put.) BASE COUNT 743 a 784 c 860 g 849 t ORIGIN 62.9 min on K12 map. 1 tacccaaggt cgctggtggt gatttcgccg ccaactaaaa ccaatgccgg tttttacgta 61 ggtttcgcaa gcaacgcgtg ctttcggatc ctgttcgagg atcgcgtcta aaacggcatc 121 agaaatttgg tcagcaattt tgtcaggatg cccttcagag acggactcgg acgtaaaaag 181 gtgttttgcc atatttaata tcacctaaag agaatttggt tagctcaaac tgttgtgtgg 241 attttctgtg gtagcggatc ctaccacgac tctgcaggtt aaaaacactg gcagtctgag 301 tgttaatcgg tatggatgga ttaacatctg gatggctatt ttaggtcaat tcttcaccct 361 atttccactt ttttttgaat cgtgtctcat tctgttaaaa acgtggctgg aaatttttcc 421 tgacaatgcc ggcattctgc gtatttatct tttgcaattt tctgccattg tggggtataa 481 aacgcggcgc gcggcttaaa taaaaagcac acgacgtttc tttcgtgttg ccacttccag 541 ccgggttcaa atcagagttt tggcttgtgg gttcgtctta acaggcggcc gtggaggtga 601 tacgaaataa tgaaccgttg tctgctgctt aacctgtctc accgttctgg tgaagattcg 661 ttccccgcac tctgcatctc tgctttgcat acctgccgat gttataccca tctcggcgct 721 tctcaggatt caagagctgg ttacagttac tgaggactga acaagggcgc tcttgtaaaa 781 acaagagttt tctcgtggtt tcgccgaact ttcacactta cgttcggtta tgtgcttaat 841 aatgttatga aaaagaaacc ggttgcgcag ttggagcgtc agcattcact gctggaaaat 901 ccatgtgctt atgggttgtt atcgcagttc caggctgcga tagtcgttaa ctgttttaca 961 cttaataaaa taatttgagg ttcgctatgt ctgacgacat gtctatgggt ttgccttcgt 1021 cagcgggcga acacggtgta ctacgctcca tgcaggaggt tgcaatgagc tcccaggaag 1081 ccagcaagat gctgcgtact tacaatattg cctggtgggg caataactac tatgacgtta 1141 acgagctggg ccacattagc gtgtgcccgg acccggacgt cccggaagct cgcgtcgatc 1201 tcgcgcagtt agtgaaaact cgtgaagcac agggccagcg tctgcctgca ctgttctgtt 1261 tcccacagat cctgcagcac cgtttgcgtt ccattaacgc cgcgttcaaa cgtgcgaggg 1321 aatcctacgg ctataacggc gattacttcc ttgtttatcc gatcaaagtt aaccagcacc 1381 gccgcgtgat tgagtccctg attcattcgg gcgaaccgct gggtctggaa gccggttcca 1441 aagccgagtt gatggcagta ctggcacatg ctggcatgac ccgtagcgtc atcgtctgca 1501 acggttataa agaccgcgaa tatatccgcc tggcattaat tggcgagaag atggggcaca 1561 aggtctatct ggtcattgag aagatgtcag aaatcgccat tgtgctggat gaagcagaac 1621 gtctgaatgt cgttcctcgt ctgggcgtgc gtgcacgtct gcgttcgcag ggttcgggta 1681 aatggcagtc ctccggcggg gaaaaatcga agttcggcct ggctgcgact caggtactgc 1741 aactggttga aaccctgcgt gaagccgggc gtctcgacag cctgcaacta ctgcacttcc 1801 acctcggttc gcagatggcg aatattcgcg atatcgcgac aggcgttcgt gaatccgcgc 1861 gtttctatgt ggaactgcac aagctgggcg tcaatattca gtgcttcgac gtcggcggcg 1921 gtctgggcgt ggattatgaa ggtactcgtt cgcagtccga ctgttcggtg aactacggcc 1981 tcaatgaata cgccaacaac attatctggg cgattggcga tgcgtgtgaa gaaaacggtc 2041 tgccgcatcc gacggtaatc accgaatcgg gtcgtgcggt gactgcgcat cacaccgtgc 2101 tggtgtctaa tatcatcggc gtggaacgta acgaatacac ggtgccgacc gcgcctgcag 2161 aagatgcgcc gcgcgcgctg caaagcatgt gggaaacctg gcaggagatg cacgaaccgg 2221 gaactcgccg ttctctgcgt gaatggttac acgacagtca gatggatctg cacgacattc 2281 atatcggcta ctcttccggc atctttagcc tgcaagaacg tgcatgggct gagcagcttt 2341 atttgagcat gtgccatgaa gtgcaaaagc agctggatcc gcaaaaccgt gctcatcgtc 2401 cgattatcga cgagctgcag gaacgtatgg cggacaaaat gtacgtcaac ttctcgctgt 2461 tccagtcgat gccggacgca tgggggatcg accagttgtt cccggttctg ccgctggaag 2521 ggctggatca agtgccggaa cgtcgcgctg tgctgctgga tattacctgt gactctgacg 2581 gtgctatcga ccactatatt gatggtgacg gtattgccac gacaatgcca atgccggagt 2641 acgatccaga gaatccgccg atgctcggtt tctttatggt cggcgcatat caggagatcc 2701 tcggcaacat gcacaacctg ttcggtgata ccgaagcggt tgacgtgttc gtcttccctg 2761 acggtagcgt agaagtagaa ctgtctgacg aaggcgatac cgtggcggac atgctgcaat 2821 atgtacagct cgatccgaaa acgctgttaa cccagttccg cgatcaagtg aagaaaaccg 2881 atcttgatgc tgaactgcaa caacagttcc ttgaagagtt cgaggcaggt ttgtacggtt 2941 atacttatct tgaagatgag taagtcctgt gttacttgaa tccgcttaat ttagcggtga 3001 taatccgcca caatttattg tgacaaatcc aacccttcct cgtcgggcct aacgacgcgg 3061 aagggttttt ttatatcgac tttgtaatag gagtccatcc atgagcacct taggtcatca 3121 atacgataac tcactggttt ccaatgcctt tggtttttta cgcctgccga tgaacttcca 3181 gccgtatgac agcgatgcag actgggtgat tactggcgtg ccgttcgata tggcca //