Path: utzoo!attcan!uunet!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004062209.AA29234@life.lanl.gov.LANL.GOV> Date: 6 Apr 90 22:09:35 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 252 Approved: lear@genbank.bio.net Checksum: 11830 16 LOCUS BSPCGTD 2648 bp ds-DNA BCT 15-DEC-1989 DEFINITION Bacillus sp. cyclomaltodextrin glucanotransferase gene, complete cds. ACCESSION M28053 KEYWORDS cyclomaltodextrin glucanotransferase. SOURCE Bacillus sp. (strain 17-1; ATCC 31007) DNA. ORGANISM Bacillus sp. Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 2648) AUTHORS Kaneko,T., Song,K.-B., Hamamoto,T., Kudo,T. and Horikoshi,K. TITLE Construction of a chimeric series of Bacillus cyclomaltodextrin glucanotransferases and analysis of the thermal stabilities and pH optima of the enzymes JOURNAL J. Gen. Microbiol. 135, 3447-3457 (1989) STANDARD full staff_review COMMENT Draft entry and computer-readable copy of sequence [1] kindly submitted by T.Kaneko, 18-SEP-1989. FEATURES from to/span description pept 224 2365 cyclomaltodextrin glucanotransferase precursor (EC 2.4.1.19) sigp 224 304 cyclomaltodextrin glucanotransferase signal peptide matp 305 2362 cyclomaltodextrin glucanotransferase BASE COUNT 692 a 777 c 652 g 527 t ORIGIN 1 gaattcgctt tcatttacaa tattgttgaa atcaaacact cgcataattt aagggccatg 61 cattccgtca ccgcacaccc ggtatggaac aaccccggtt tctcttcagg agatgccggg 121 gttttttgtt gccctatatt tcgtacagga ggtgattccc cgcagcttcg gtttgatcat 181 tgaaccaacc cccattctat aactgctaca taggaggaat acgatgaaaa aaatctccaa 241 acttacaacc gctcttgccc ttagcttgtc cctggcgcta agcttgctcg gcccagccca 301 tgcagccccg gatacctcgg tatccaacaa gcaaaatttc agcacggatg tcatttatca 361 aatctttacg gaccgtttct ccgacggcaa tcctgccaac aacccgaccg gcccggcctt 421 tgacggtacc tgcaccaacc tgaggcttta ctgcggcggc gactggcaag ggatcatcaa 481 caaaatcaac gacggctacc tgaccggcat gggcgttacc gccatctgga tctcccagcc 541 ggtcgagaac atctacagcg tcatcaatta ttccggcgtg aataacaccg cataccacgg 601 ctattgggct agagacttca agaaaacgaa cccggcttac ggcacgattg ccgatttcca 661 gaatctcatc gctgccgccc atgccaagaa catcaaagtc atcatcgact tcgcaccgaa 721 ccacacgtct cccgcttcct tggaccagcc gtcgtttgcg gagaacggca agctgtacaa 781 caacggcagg gacgaaggcg gatacacgaa cgatacgcac aatttattcc atcataacgg 841 gggcaccgat ttctcgacga ccgagaacgg gatttacaaa aacctgtacg atcttgccga 901 tctgaaccac aacaacagca cagtggatac ctacctgaag gatgccatta aaatgtggct 961 cgatctgggc attgacggca ttcgaatgga cgcggtaaaa catatgccgt tcggctggca 1021 gaagagcttc atggccaccg tcaacaatta caagccggtc ttcaccttcg gcgaatggtt 1081 cctcggggta aacgaagtga gtgccgagaa tcataagttc gccaacgttt ccggcatgag 1141 cctgctggac ttccgcttcg cgcagaaggt tcgccaggta ttcaaggaca acaccgacaa 1201 tatgtacgga ctgaaatcca tgctagaggg ctctgcgacc gattacgcgc agatggagga 1261 tcaggtcacg ttcatcgata accacgacat ggaacgtttc cacaataaca gcgccaaccg 1321 ccggaagctg gagcaagcgc tcgccttcac gttaacttcc cgcggcgtgc cagccatcta 1381 ttatggaacc gagcaataca tgtccggcgg gaacgatccc gacaaccggg ctcgaattcc 1441 ttctttctct accacgacta cggcttatca ggtcagtaaa aagctggcgc ctctgcgtaa 1501 atccaatccg gccatcgctt atgggacgac gcaggagcgc tggataaaca acgatgtgtt 1561 gatctatgag cgcaagttcg gcaacaacgt agccgtcatc gccgtcaacc gcaacgtgaa 1621 cacgtcggcc tccattacgg gactggtaac ctcactgccg gccggcagct acaccgacgt 1681 gctgggcggc ctcttgaacg gtaacaattt gaccgtcggc tccggcggat ccgcttccat 1741 cttcacgctg gcagcgggcg gtacggccgt gtggcaatac accacggccg tgactgcgcc 1801 aaccatcggg cacgtaggac cgatgatggc caaaccaggc gcagccgtca ccattgacgg 1861 ccgcggtttc ggtgcaacca aaggcacggt atacttcggc acgacggcag ttaccggcgc 1921 taatattacg gcttgggaag acacgcagat caaagtgaaa atccctgccg ttgccggagg 1981 cgtatacaat atcaaaatcg ccaacagtgc cggaacctca agcaatgtgc atgacaactt 2041 cgaagtgctg agcggggatc aggtcagcgt gcgctttgtg gtgaacaacg ccaccaccgc 2101 gctcggccag aacgtatatc tggcaggcag cgtaagcgag ctcggcaact gggacccggc 2161 caaagccatc ggtccgttgt acaaccaggt catctaccaa tacccaacct ggtactatga 2221 cgtcaccgtt cccgccggca aaacgatcga atttaaattc ctgaaaaaac agggctcgac 2281 ggtaacgtgg gaaggcggct cgaaccatac cttcaccgca ccaacgagcg gcacggccac 2341 cataaacgtg aactggcaac cgtaagttca agaacgacta gcttctgccg aagaacggcc 2401 cctaaacaaa accagctccg gatatgatcc cggagctggt tttgttcatg caggtcataa 2461 ttccagtagc aatagcccgt tacgcgaagc atctcacagt tcctctgaac tgcatgagcg 2521 attcccaaag agagagcgtg ctcagcaggc agtaactcag cattcctctg cattgcatga 2581 gcgattccca aagggagagc gtctcaacaa gtagtgactc agcaagcaga cgggacaact 2641 caacgatc // LOCUS BSUDIV 1403 bp ds-DNA BCT 14-FEB-1990 DEFINITION B.subtilis division initiation protein (divIB) gene, 5' end. ACCESSION M31800 KEYWORDS division initiation protein. SOURCE B.subtilis (strain 168; prototroph SB19) DNA. ORGANISM Bacillus subtilis Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 1403) AUTHORS Harry,E.J. and Wake,R.G. TITLE Cloning and expression of a Bacillus subtilis division initiation gene for which a homolog has not been identified in another organism JOURNAL J. Bacteriol. 171, 6835-6839 (1989) STANDARD simple staff_review FEATURES from to/span description pept < 1 165 ORF1 (AA at 1) pept 295 1086 division initiation protein pept 1083 > 1403 ORF3 (ttg start codon) signal 213 240 transcription terminator BASE COUNT 521 a 229 c 313 g 340 t ORIGIN 1 ggcggtgcaa agatatcgga gatgcacgga aacttcatcg tcaatgcggg gggagcatca 61 gcaaaagatg tgcttgatct cattgaccat gtgaaaaaga caatccgtga aaaatacgag 121 attgatatgc acacagaggt tgaaatcatc ggcggaaatc gctgattcaa gttctgactg 181 aagctgttca tatgatatac tgtaagcaaa cgacaaacgg catcatagta tgccgtttgt 241 tttggaatag acagactttt aacagctgtt tcatttgaat gaggtgaaca ggcaatgaac 301 ccgggtcaag accgagaaaa aatcgttaac attgaagagc ggatccctaa aattaaagag 361 cagaggaaac aaaaggcaaa ccgccgtctc atttcattta ttatgctctt ttttattatg 421 gtgctgatca ttgtgtacct gcaaacacca atcagtaaag tatcaacaat ctctgttaca 481 gggaatgaaa atgtatcaaa aaaggaaatt atcgaccttt ccgatattaa cagcggagat 541 actgagtttt ggagtttgga caagcaaaaa acagaaaaga agattcagca aaataaatta 601 gtgaaaaaag cggagatcag caaatcgctt cctaataaaa tcaacattgc aatcgaagaa 661 tataaagcga ttgcttattt agaaaaagac gatgtgtact atgaagtgct tgaaaacggc 721 tcagttctgc caaacgaagt aacgccggat gatgccggac cgattttagt gaattggaca 781 aacgcgaaga agcggtctca aatggccaag cagctcgatg cgttgtcaaa ttcgttaaaa 841 cagtcgattt cagaaattta ttatacgcct gtaaaaatgg atgaaaaccg tattaagttg 901 tacatgaacg acggttatgt tgttacggca tctattaaaa cgtttgcaga ccgaatgaag 961 acgtatcctt ctatcatctc acagctaagc agcaataaaa aaggaatcat tcatttagaa 1021 gttgccacct attttgaaga gtttgggaaa aacgataaag ctgctaaaaa ggaagatgaa 1081 aattgagggg caaatcagca gtccttcttt ccttgattat gcttatcgca ggttttttga 1141 tttcattttc ttttcaaatg acaaaagaaa acaacaaaag cgcggctgag acggaagagt 1201 ggaaaaaaga atatgcgctg agagatgaac tgctgaaaca agagaaagaa aataagaagt 1261 ttgaaaaaga attatatcaa aagcaaaaca aagtccgcca ggcggaaaat aagctgaaga 1321 aagagaagtc ggaatactat aatgtcctcg aagatacaga aaaatacagg atgtatattg 1381 gggaagtcgg tgtgcaggga gaa // LOCUS HUMDF3AA 572 bp ss-mRNA PRI 16-FEB-1990 DEFINITION Human breast carcinoma-associated antigen DF3 mRNA, 5' end. ACCESSION M31823 KEYWORDS antigen DF3; glycoprotein. SOURCE Human breast carcinoma cell line MCF-7, cDNA to mRNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 572) AUTHORS Abe,M., Siddiqui,J. and Kufe,D. TITLE Sequence analysis of the 5' region of the human DF3 breast carcinoma-associated antigen gene JOURNAL Biochem. Biophys. Res. Commun. 165, 644-649 (1989) STANDARD simple staff_review FEATURES from to/span description pept 67 > 572 DF3 antigen mRNA 1 > 572 DF3 mRNA BASE COUNT 114 a 236 c 129 g 93 t ORIGIN 1 acctctcaag cagccagcgc ctgcctgaat ctgttctgcc ccctccccac ccatttcacc 61 accaccatga caccgggcac ccagtctcct ttcttcctgc tgctgctcct cacagtgctt 121 acagctacca cagcccctaa acccgcaaca gttgttacgg gttctggtca tgcaagctct 181 accccaggtg gagaaaagga gacttcggct acccagagaa gttcagtgcc cagctctact 241 gagaagaatg ctgtgagtat gaccagcagc gtactctcca gccacagccc cggttcaggc 301 tcctccacca ctcagggaca ggatgtcact ctggccccgg ccacggaacc agcttcaggt 361 tcagctgcca cctggggaca ggatgtcacc tcggtcccag tcaccaggcc agccctgggc 421 tccaccaccc cgccagccca cgatgtcacc tcagccccgg acaacaagcc agccccgggc 481 tccaccgccc cccaagccca cggtgtcacc tcggccccgg acaccaggcc ggccccgggc 541 tccaccgccc cccaagccca cggtgtcacc tc // LOCUS MUSH2LINK 2252 bp ss-mRNA ROD 14-FEB-1990 DEFINITION Mouse MHC H-2K/t-w5-linked open reading frame mRNA, complete cds. ACCESSION M32010 KEYWORDS . SOURCE Mouse embryo carcinoma cell line F9, cDNA to mRNA, clone 10.2a. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 2252) AUTHORS Han,St.-Jacques.B., MacMurray,T.-H. and Shin,A.H.-S. TITLE A putative transmembrane protein with histidine-rich charge clusters encoded in the H-2K/t-w5 region of mice JOURNAL Mol. Cell. Biol. 10, 138-145 (1990) STANDARD simple staff_review FEATURES from to/span description pept 301 1611 MHC H-2K/t-w5-linked ORF precursor sigp 301 396 MHC H-2K/t-w5-linked ORF signal peptide (put.) matp 397 1608 MHC H-2K/t-w5-linked ORF mRNA < 1 2252 MHC H-2K/t-w5-linked ORF mRNA BASE COUNT 491 a 586 c 702 g 472 t 1 others ORIGIN 1 tcccggagcc ggtgagaggt ccctgctgct cccttacggc gctttctagg cctttacccc 61 aacgagtggg ccatagagac gcgggcccag agagaccgta aagttgctga tcaaaggcta 121 gagcggtgtc gggggtgggg ggctgcatcc aggaagggtg ttggggatga ggtggaccgg 181 ccttggggac aatgtaagag cggagcaagt agtatagagg aagggcttca agggacgcgg 241 atcccgaata ggtagattga gagtcaagtc gagtcgtctc ttgttcctcc ggtcagcgtg 301 atgaccatgg gcctgcgggc cccccactgg gtggctgtgg gactgctgac ctgggcggct 361 ttggggctgc tggtggccgg acacgagggt catggtgacc tgcacaaaga tgtggaagag 421 gacttccatg gccacagtca cgggcactca catgaagatt tccaccatgg ccacagccac 481 gggcactcgc atgaagattt ccaccatggc cacggccaca ctcatgaaag catctggcat 541 gggcatgccc acagccacga ccatggacac tcacgtgagg aattacacca tggccatagc 601 catggccact cccacgatag cctccaccac ggaggacatg gacatgccca tcgtgaacat 661 agccatggga cttctaggga ggctggggct ccaggcatca aacaccacct ggacactgtc 721 accctctggg cctacgcact gggggccaca gtgctgatct ccgcagctcc gttcttcgtg 781 ctgttcctca tcccagtaga atctaactct cccaggcacc gctctctgct ccagatcctg 841 ctcagttttg cttccggggg gctcctgggt gatgcgttcc tccacctcat cccgcatgcc 901 ttggaacctc attctcacca cgctccagag cagcctganc atggacactc ccacagtggc 961 cagggcccca ttctctctgt ggggctgtgg gttctcagtg ggattgtcgc cttcctcgtg 1021 gtggagaaat ttgtgagaca cgtgaaagga ggacatggac acagtcacgg acacggagac 1081 aggcatgcgc atggagacag tcacacccat ggagatagac atgagtgttc ttcaaaggaa 1141 aagcccagca cagaggaaga gaaggaagtg ggcgggttgc ggaaaaggag aggaggaaac 1201 actgggccca gagatggccc ggtgaaacct cagagccctg aagaagaaaa agcaggctca 1261 gacctgcgtg tgtctgggta cctgaatctg gctgctgact tggcacacaa cttcacagac 1321 ggtctggcca ttggtgcttc ctttcgtggg ggccgagggc tagggatcct gaccacaatg 1381 acagtcctgc tgcacgaact gcctcatgag gttggggatt ttgccatcct ggtccagtct 1441 ggctgcagca agaagcaggc gatgcgtctg caactcgtga ctgcaattgg agcattggca 1501 ggcactcgtg tgcccttctc accgagggag gggcagtgga cagtgacgtg gcaggtggtg 1561 caggtcctgg ctgggtcctg ccattcactg caggcggatt tatctacgta gcaacagtgt 1621 ctgtgctgcc tgagctattg agagaccgat ctccactgca gtcactgttg gaggtgctgg 1681 ggctgctggg gggtgttgcc atgatggtac tgattgccca tcttgagtga ggggtgaggt 1741 gacctgtcct tcccctaact cctaataaag gcagttggta gtcctggcca gtgctaatgc 1801 cagaaggagt gtcagccttg gagattagca gagcctctgt ttgaggcctt agaggtatga 1861 ggatcatacg gagcatgaga ggccagaagg accacggagt gggagactgc ccagcagcgt 1921 tgttgctttt ggaaaaatca atgggaccat gaagaagact gggaagacgg tagcctaccc 1981 gatggtccct aatctacgat ttctcagcgc cacgtgccgc aggggtccct ccaaggccca 2041 tctccctctg aactagttag tgatggcttc agggaagacc tggcagaagg actggggtag 2101 acatcaatcg tgtgtcctga tttgaagggg gaggggggct ccttgggaag atgtctcagc 2161 ctgatttttt gtctctactc attttatacc actgtttgaa tgggtgcgga ggaacggtga 2221 ccaggaataa aagaccttgg atcttcggcc cc // LOCUS PSEMVAAB 1117 bp ds-DNA BCT 16-FEB-1990 DEFINITION P.mevalonii HMG-CoA-reductase (mvaA) gene, 3' end, and HMG-CoA-lyase (mvbB) gene, complete cds. ACCESSION M31807 KEYWORDS 3-hydroxy-3-methyl glutaryl CoA-lyase; 3-hydroxy-3-methyl glutaryl CoA-reductase; HMG-CoA-lyase; HMG-CoA-reductase. SOURCE P.mevalonii DNA. ORGANISM Pseudomonas mevalonii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Acidiphilium cryptum; Pseudomonadaceae. REFERENCE 1 (bases 1 to 1117) AUTHORS Anderson,D.H. and Rodwell,V.W. TITLE Nucleotide sequence and expression in Esherichia coli of the 3-hydroxy-3-methylglutaryl coenzyme A lyase gene of Pseudomonas mevalonii JOURNAL J. Bacteriol. 171, 6468-6472 (1989) STANDARD simple staff_review FEATURES from to/span description pept < 1 135 HMG-CoA-reductase (mvaA; AA at 1) pept 147 1052 HMG-CoA-lyase (mvaB) BASE COUNT 188 a 362 c 380 g 187 t ORIGIN 1 catgcgcgca atattgccgt ggtggcgggc gcccgaggcg atgaggtgga ctgggttgcc 61 cggcagttgg tggaatacca cgacgtgcgc gccgaccgcg ccgtagcagt gctgaaacaa 121 aagcgcggcc aatgagcgtg gtcccgatgc aagcggtaaa ggtctttgaa gtcggccccc 181 gtgacggcct gcagaacgaa cgccagccgc tgtcggtggc cgcccgtgtg ggcttgatcg 241 gcgaactggc tggcaccggc ctgcggcata tcgaagccgg cgccttcgtg tcgccgcgct 301 gggtgccgca gatggccggc agcgacgagg tgttgcgcca gttgcccagc aacgacgggg 361 tcagttacac ggccctggtg cccaaccggc aaggcttcga ggccgcgcaa cgggctggct 421 gccgcgaggt agcggtgttc gccgccgcct ccgaggcgtt ttcgcgcaac aacatcaatt 481 gctccatcga tgaaagcttc gagcgcttca ccccggtgtt gcgcgccgcc aacgaagcct 541 ctatccgggt gcgcggttat gtatcctgcg tgctcggttg cccgttcagt ggggccgttg 601 cgccggaggc tgtggccaag gtcgcacgcc gcctgtacga actgggctgc tacgaaatca 661 gcctgggtga caccattggc gccggccgcc cggatgaaac ggctcaattg ttcgagctct 721 gcgcacggca actgccggtc gcggcactgg ccggccactt ccacgatacc tggggcatgg 781 ccatcgccaa tgtgcatgcc gcactcgcgc agggtgtacg caccttcgac agctcggtcg 841 cgggcctcgg cggctgcccc tactcgccgg gtgccagcgg taacgtggcc acggaagatc 901 tgttgtacct gctgcacggc ctgggctaca gcaccggtgt cgacctggag gcggtggcac 961 aggttggtgt gcgcatcagc gcgcagctgg gcaccgccaa ccgctcccgt gccggccttg 1021 ccctggcagc aaggagcgcc cgcgaacact gatagcgcct gtggctcccg aacaaaaaca 1081 acaagcccgc aagggcagga gaatgccaat gaccttt //