Path: utzoo!utgpu!watserv1!watmath!uunet!snorkelwacker!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004091805.AA11103@life.lanl.gov.LANL.GOV> Date: 9 Apr 90 18:05:26 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 126 Approved: lear@genbank.bio.net Checksum: 35676 8 LOCUS ECOCMA 1007 bp ds-DNA BCT 15-MAR-1989 DEFINITION Plasmid pColBM-Cl139 from E.coli cma gene encoding colicin M activity peptide, complete cds. ACCESSION M16754 KEYWORDS colicin M activity. SOURCE Plasmid pColBM-Cl139 DNA, clone pTO4. ORGANISM Plasmid Colicin BM-Cl139 Prokaryota; Bacteria. REFERENCE 1 (bases 1 to 1007) AUTHORS Koeck,J., Oelschlaeger,T., Kamp,R.M. and Braun,V. TITLE Primary structure of colicin M, an inhibitor of murein biosynthesis JOURNAL J. Bacteriol. 169, 3358-3361 (1987) STANDARD simple staff_entry FEATURES from to/span description pept 60 875 colicin M activity peptide mRNA < 1 901 cma mRNA BASE COUNT 283 a 227 c 198 g 299 t ORIGIN NaeI site. 1 ggcggaggcg ttagccagcg gcgaactctg ttatcttgtt aacttataag gagttatgta 61 tggaaacctt aactgttcat gcaccatcac catcaactaa cttaccaagt tatggcaatg 121 gtgcattttc tctttcagca ccacatgtgc ctggtgctgg ccctctttta gtccaggttg 181 tttatagttt tttccagagt ccaaacatgt gtcttcaggc tttaactcaa cttgaggatt 241 acatcaaaaa acatggggcc agcaaccctc tcacattgca gatcatatcg acaaatattg 301 gttacttctg taacgccgac cgaaatctgg ttcttcaccc tggaataagc gtttatgacg 361 cttaccactt cgcaaaacca gcgccaagtc aatatgacta tcgctcaatg aatatgaaac 421 aaatgagcgg taatgtcact acaccaattg tggcgcttgc tcactattta tggggtaatg 481 gcgctgaaag gagcgttaat atcgccaaca ttggtcttaa aatttcccct atgaaaatta 541 atcagataaa agacattata aaatctggtg tagtaggcac attccctgtt tctacaaagt 601 tcacacatgc cactggtgat tataatgtta ttaccggtgc atatcttggt aatatcacac 661 tgaaaacaga aggtacttta actatctctg ccaatggctc ctggacttac aatggcgttg 721 ttcgttcata tgatgataaa tacgatttta acgccagcac tcaccgtggc attatcggag 781 agtcgctcac aaggctcggg gcgatgtttt ctggtaaaga gtaccagata ctgcttcctg 841 gtgaaattca cattaaagaa agtggtaagc gataatataa gggccggggt tccggctttt 901 tatgcagcct ttataacagt gtattagtca ttcgcatatt caacatatcc ctcctcacaa 961 tggtacatgc cataatacat tctcttaccc tccgggcctt cagcttt // LOCUS ECOCOLM 810 bp ds-DNA BCT 15-SEP-1989 DEFINITION Plasmid pColBM-Cl139 colicin M resistance (cmi) locus, complete cds. ACCESSION M17810 KEYWORDS cmi protein; colicin M resistance protein. SOURCE Plasmid pColBM-Cl139 DNA, isolated from E.coli strain JM101. ORGANISM Plasmid Colicin BM-Cl139 Prokaryota; Bacteria. REFERENCE 1 (bases 1 to 810) AUTHORS Oelschlaeger,T. and Braun,V. TITLE Sequence, expression, and localization of the immunity protein for colicin M JOURNAL J. Bacteriol. 169, 4765-4769 (1987) STANDARD simple staff_review FEATURES from to/span description pept 322 675 colicin M resistance protein pept 337 675 colicin M resistance protein (alt.) BASE COUNT 252 a 146 c 177 g 235 t ORIGIN 7 bp upstream of PstI site. 1 ggctgcagag cctgatgggg cataagtcca tcagctcaaa cgaggtctac acgaaggtgt 61 ttgcactgga tgtggctgta cggcaccggg tgcagttttc gatgcctgag tccgatgcgg 121 tcacaatgct gaaaaacaga catgcataat aagtcacaat tatgaattgt gatttcttct 181 ataaaaaaga gaccactgca atatgtgatc tcttgtatta tttcataatt gttaaagcca 241 cttcacagta tgctcacatt gtactgatat attcgtaatg tttttttata tcgaatgaac 301 gacagaagtt gtggagattt tatgaaagta attagcatga aatttatttt tattttaacg 361 attattgctc ttgctgctgt ttttttctgg tctgaagata aaggtccggc atgctatcag 421 gtcagcgatg aacaggccag aacgtttgta aaaaatgatt acctgcaaag aatgaaacgc 481 tgggacaacg atgtacaact tcttggtaca gaaatcccga aaattacatg ggaaaagatt 541 gagagaagtt taacagatgt tgaagatgaa aaaacacttc ttgtcccatt taaagctgaa 601 ggcccggacg gtaagagaat gtattatggc atgtaccatt gtgaggaggg atatgttgaa 661 tatgcgaatg actaatacac tgttataaag gctgcataaa aagccggaac cccggccctt 721 atattatcgc ttaccacttt ctttaatgtg aatttcacca ggaagcagta tctggtactc 781 tttaccagaa aacatcgccc cgacggatcc // LOCUS ECOORID 1890 bp ds-DNA BCT 15-DEC-1989 DEFINITION E.coli plasmid pColBM-Cl139 D protein gene, complete cds, oriV region, and ORF. ACCESSION J03312 KEYWORDS D protein; ORF; oriV region. SOURCE E.coli (strain K12 Cl139) plasmid pColBM-Cl139 DNA. ORGANISM Plasmid Colicin BM-Cl139 Prokaryota; Bacteria. REFERENCE 1 (bases 1 to 1890) AUTHORS Thumm,G., Oelschlaeger,T. and Braun,V. TITLE Plasmid pCoIBM-CI139 does not encode a colicin lysis protein but contains sequences highly homologous to the D protein (resolvase) and the oriV region of the miniF plasmid JOURNAL Plasmid (1988) In press STANDARD simple staff_review COMMENT Draft entry and sequence for [1] kindly submitted by G.Thumm, 18-AUG-1988. Sequence [1] complemented. FEATURES from to/span description pept 1108 1890 D protein ORF 654 1106 ORF8 site 257 576 oriV region BASE COUNT 434 a 476 c 534 g 446 t ORIGIN 1 bp upstream of EcoRI site. 1 gaattcatct tttggccgtt tacgtctgtt ccgttatcct gatgatacga tgttctgcac 61 gttctgccgg gaagatgcag atgattcgct taaaagtatt atgacccatc tctgggagct 121 ggatgcagag atgacagatc ctgtcatagc tatgtttaat cacgtctgag tgccgtgagt 181 gatttctgtc ttttatgcaa cagtgccaag atattgtaat caaaaaaaag cattaatgca 241 ttttggacag taatctattt taattgatga catagaggca ttaatctttc tttttcttca 301 ggaagatccg aaaactcctg gtcacggatc ttcctctccc ccacacaacg ccacctcctg 361 taagcacaac atgtggtgcc ggattcagct gctgatgaca ctatatgttg tgtcatctcc 421 ctgacctgtg atgcgtcgcg caggggcgga aaacagcgat atgatgattt cctcggcgtg 481 gtacacttcc ggaaagttgt gatattccgg aaagtcggat ctgacggaaa cggctctccg 541 gtaatttaac ggcgtggtta tatggatgct tgttatcatg gtgatgatga taacggcatg 601 atgttatcag acggcgtgac ggtaagggca gtgatgatgg atgacgttat cgcatgaccg 661 tccctgcccg gaaaagaaaa aaggagtcac ccatgttttt tattgagaat gaaggtcagg 721 ctgtcgccgg aacggattac tggcagtctg tacaggcgca ggccggatat gtctacctca 781 gctggaatgc cggcgcagcc aggctgcttg tcccggatgc ggcaaaacat ttactcaggg 841 agatgcgggg ggctgagtac gtcatcatca gtaagggagc actgcatggc cgcgatgcgc 901 tggaactggt atttgaagac ggcagcgatg cgccgtttgt gatccacatg ctgagtgagc 961 agtgcgatcg cctgctcccc gaaaacaacc agggaggggg ttttgttgtc accgtctgga 1021 cgcgtggcgg taaccagctc cgttatccgg gaaagtaccg ggttgtggaa aacctgcccg 1081 acgtttcccc gtggagtgaa cactgatatg cagcacctgc cggcaccgat ccaccatgcc 1141 cgggatgctg ttcagcttcc tgttgccatc gattatccgg cagcgctggc actccgccag 1201 atgtcgatgg ttcatgatga actgcccaaa tacctgctgg cccctgaagt gagcgccctg 1261 ctccattacg tcccggatct gcgccgcaag atgctgctgg ccacactgtg gaacaccggt 1321 gcgcgcatta atgaagcact ggcgctgacg cggggggatt tttcgctcac gcctccgtat 1381 ccgtttgtgc agctggccac tctgaagcag cggacagaaa aagccgccag gacggcagga 1441 agaatgcccg ccggtcagca gactcaccgg ctggttccgc tctccgactc ctggtacgtc 1501 agccagctgc agacgatggt agccacactg aaaatcccca tggaacggcg taataaacga 1561 acaggcagga cagagaaagc gcggatctgg gaagtgacgg acagaacggt caggacctgg 1621 attggggagg cggttgccgc cgctgccgct gatggtgtga cgttctctgt cccggtcacg 1681 ccacatacgt tccgccattc ctatgcgatg cacatgctgt atgccggtat accgcttaag 1741 gttctgcaga gtctgatggg gcataagtcc atcagctcaa cagaggtcta cacgaaggtg 1801 tttgcactgg atgtggctgc acggcaccgg gtgcagtttt cgatgcctga gtccgatgcg 1861 gtcacaatgc tgaaaaacag acatgcataa //