Path: utzoo!utgpu!watserv1!watmath!uunet!lll-winken!bu.edu!snorkelwacker!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004131724.AA07213@life.lanl.gov.LANL.GOV> Date: 13 Apr 90 17:24:02 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 214 Approved: lear@genbank.bio.net Checksum: 54496 13 LOCUS RATA2UGLB 506 bp ds-DNA ROD 13-FEB-1990 DEFINITION Rat alpha-2u globulin gene, exon 1. ACCESSION M33690 M32014 KEYWORDS alpha-2u globulin. SOURCE Rat (strain Wistar-Lewis) adult liver DNA, clone 1H. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 138 to 506) AUTHORS Shaw,P.H., Walter-Sierra,R., Tamone,F. and Schibler,U. TITLE Rapid identification of DNA fragments containing promoters for RNA polymerase II JOURNAL Gene 84, 371-381 (1989) STANDARD full staff_review REFERENCE 2 (bases 1 to 137) AUTHORS Tamone,F. JOURNAL Unpublished (1990) Dept. Mol. Biol. U. of Geneva, Geneva, SWITZ. STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by F.Tamone, 07-FEB-1990. FEATURES from to/span description pept 436 > 506 alpha-2u globulin, exon 1 mRNA 377 > 506 alpha-2u globulin mRNA signal 1 376 promoter BASE COUNT 146 a 120 c 117 g 123 t ORIGIN Chromosome 5. 1 cttcttccac actccactca agtcttgaag caaagattct ctccatgctt gaccttccag 61 ttcagtaccc acccactcca taactggttt tctgattcta agtcagatcc aatgttgcat 121 gtggttccag atggccctct agaacaccca ctgtttttct tgggaatatg ttttgcgaaa 181 tgtatgagtg atagaatcaa tccataggag atgacatcgc caagtttcaa aagggcagga 241 acaatccttg gcttcacatc agtacatgag gaaaacattc cacaaagcct gaaggatgga 301 ggcccatatg agaaggaaaa aaaaacactc aaacccagag agagtataaa gacgagcaaa 361 gtgctggagg tggagtgtgg gcaccatcag cagagggatt gtcccgacag agaggcaatt 421 ctattcccta ccaacatgaa gctgttgctg ctgctgctgt gtctgggcct gaccctggtc 481 tgcggccatg cagaagaagc tagttt // LOCUS RATA2UGLBA 371 bp ds-DNA ROD 13-FEB-1990 DEFINITION Rat alpha 2u globulin pseudogene, exon 1. ACCESSION M33652 M32014 KEYWORDS alpha-2u globulin. SOURCE Rat (strain Wistar-Lewis) adult liver DNA, clone 1F. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 371) AUTHORS Shaw,P.H., Walter-Sierra,R., Tamone,F. and Schibler,U. TITLE Rapid identification of DNA fragments containing promoters for RNA polymerase II JOURNAL Gene 84, 371-381 (1989) STANDARD simple staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by F. Tamone, 07-FEB-1990. FEATURES from to/span description pept.ps 301 > 371 pseudo-alpha-2u globulin, exon 1 mRNA 243 > 371 alpha-2u globulin mRNA BASE COUNT 119 a 71 c 96 g 85 t ORIGIN Chromosome 5. 1 tctagaacat ccattgtttt tcttgggaat atgttttgtg aaatgtatga gtgataaaat 61 catccatagg agatgagatt gcccaagttt gaaaagggca ggaacaatcc ttggcttcac 121 atcagtacat gagaaaacat tccacaaagc ctgagggaag gaggcccata tgagaaggaa 181 aaattaaaaa acactcgacc cagagagagt ataaagagga gcaaagtgct tgaggtggag 241 tgtgggcacc atcaacagag agagtgtccc gacagagagg caattctatt ccctaccaac 301 atgaagctgt agctgctgct gctgtgtctg ggcctgaccc tggtctgtgg ccatgcagaa 361 gaagctaatt c // LOCUS RIRSTPSTA 2906 bp ds-DNA BCT 12-FEB-1990 DEFINITION R.tsutsugamushi heat shock protein 11 (stp11) and major antigen 58 (sta58) genes, complete cds. ACCESSION M31887 KEYWORDS antigen; heat shock protein; heat shock protein 11; major antigen 58; outer membrane protein. SOURCE R.tsutsugamushi (strain KARP) DNA, clone pRTS58H2.9. ORGANISM Rickettsia tsutsugamushi Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rickettsias and Chlamydias; Rickettsiales; Rickettsiaceae. REFERENCE 1 (bases 1 to 2906) AUTHORS Stover,C.K., Marana,D.P., Dasch,G.A. and Oaks,E.V. TITLE Molecular cloning and sequence analysis of the sta58 major antigen of Rickettsia tsutsugamushi: Sequence homology and antigenic comparison to the 60 kilodalton family of stress proteins JOURNAL Unpublished (1990) Walter Reed Hospital, Washington,D.C. 20307 STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by E.V.Oaks, 02-FEB-1990. FEATURES from to/span description pept 780 1064 heat shock protein 11 pept 1137 2804 major antigen 58 binding 770 775 ribosome binding site signal 675 680 -35 promoter signal 700 705 -10 promoter BASE COUNT 1083 a 354 c 599 g 870 t ORIGIN 1 aagctttgca acattaattg ccaattcttt tgacagtaat gtaattgcgg ttagaaaaag 61 tgactgaaac ctcagaaaaa agaattgtag gagttaattg cttaatacaa tatttacatc 121 taatagtaaa acatttgact ttcttagttt taattttagg ctagtgaaaa ctgatcaatc 181 taaaattaaa attcagaaaa atgtctagaa cgagagcaca aacttctctg ctaaaaatac 241 taaaagaaat attctgcaag tttatattgt aaccaattga tagagtaata tatcttatca 301 accagatatt acatggcttg ataaattact ttaggattgg taactctagc agttgtttta 361 gatatgtaat ggacttgttt gataagatag taagacatca tctaatgcaa tcaagtggat 421 tgaaaggctt ttgctggaaa aggttgtgta gaagaaagtt atatgaaaag gtggaattat 481 ataatgatta ccaaattcga tagatctgtg gtaagcaata acttctgata ggctataagc 541 aatgatatag ctaaaccagt ataaaacagt tatgttatat actttttcaa attaattaag 601 aaaaacaatt agtgcgatat taatggttta aactcagcgt ataaaagaaa aatataaaaa 661 ttttttattc acacttgaaa taagtagtaa cagaagatat atgattaggg catagtaaaa 721 gtatagatta actaattatg ctaatttaat tatatagagt taaatttttg gaggattata 781 tgaaatacca accactgtat gatcgtgtgc tagttgagcc aatacaaaat gatgaagcac 841 atggaaaaat tcttattcca gataccgcaa aggagaaacc aacagaagga atagtagtta 901 tggttggcgg tggctataga aatgataaag gtgatattac accgttaaaa gtaaagaaag 961 gagatactat agtctataca aaatgggctg gtactgaaat aaaattagaa agtaaagact 1021 atgtagttat taaagaatca gatatattat tagttaaaag ctaaaatgct taatgtatta 1081 ataattaaag gatgctagac taatcaaatt ataaaatatt ttaaggagtt ttcagtatga 1141 gtaaacaaat tgtacatggc gatcaatgtc gtaaaaaaat aatagaaggc ataaatgttg 1201 tagctaatgc agtaggtata acattaggac ccaaaggtag atgtgtagca atagaacaat 1261 cttatggtcc tcctaaaatt actaaagatg gagttagtgt tgctaaagca attcaactta 1321 aggataaatc tcttaatgtt ggagcccaat ttgttatatc agttgctagt aaaacagctg 1381 atgtggctgg tgatggtaca actactgcta cagttatagc tgatgctgca gttagggagc 1441 taaataaagc tgaagttgca ggcattgata tacaggaagt aagaaaaggc gctgagaaag 1501 ctgttgaagc agttattgct gatgtacgta aaaacagcag ccctgttaaa aatgaggaag 1561 aaattgctca agtagctact gtttcatcta atggagaccg cgaaattggt gaaaagattg 1621 ctaatgcaat gaaacaagtt ggccaagaag gagtgataac tgttgaagat tctaaaaatt 1681 ttaactttga agttgaagtt gttaaaggaa tgagatttga ccgcggatat atatcacagt 1741 actttgcaac gaatcgtgaa aagatgatta ccgaatttga aaatccttat attttgctat 1801 tggatcagaa ggtatctaca gtgcagccac tggttcctgt gcttgaagct gttgctcaca 1861 ctggcaagcc attagtattg attgctgatg atgtagacgg agaagctctt actgcattga 1921 tattaaacaa tttaaaaggt tctattaaag tagtagctgt taaggcacct ggttttggtg 1981 atcgaaaaaa agaaatgtta gaagatattg ctattttaac aaatggagaa gtaattactg 2041 aacaactagg aatcaaacta gaaaaggtta atgatacatc taagttagga actgcaaata 2101 gagttattgt tacaaaagat catactacta tagttcatga taagaataat agtgatatag 2161 agaagaaagt taattctcgt tgtgaacaga tccgtgaagc aattaaagat acaacttcag 2221 attatgaaaa agaaaaatta caagagcgct tagcaaaact tagaaacggt gtagctgtac 2281 taaaagttgg tggtgctact gaagtagaac aaaaagaacg taaggataga gtagaagatg 2341 ctttacatgc tactagagca gctgttgaag aaggtatagt gcctggtggt ggtgttgcgc 2401 tattttatgc ttctcgtgtt ttagatagtt tgaagtttga taatgaagat caaagggtag 2461 gtattaacat tatcaaaaaa gtattagaag ctccggtaag acaaatagtt aaaaatgctg 2521 gaggcaaaga ggatgttgtt gttaatgaac taagcaagag tacagataaa aaccgtggat 2581 tcgatgctag aacaatgcaa tacgttgata tgataaaagc aggtattgtg gatccaacta 2641 aagttgtacg tactgcgtta caagatgctt tttctgtggc ttcattagta attgctacct 2701 cagctatgat tactgatcat gaggaagata ataatactgg taaccgcagt ggtggtggag 2761 taggtggtgg acatcatggt ggtatgggcg gaatggattt ctaatccgcc cccatgtcta 2821 ccttcaaaaa aaatagagta taacttttgt ataaggttgc tagttatgta tttttttaca 2881 aaattgcagt ataatatttc aagctt // LOCUS YSCTUP1A 2891 bp ds-DNA PLN 12-FEB-1990 DEFINITION S.cerevisiae TUP1 protein gene, complete cds. ACCESSION M31733 KEYWORDS regulatory protein. SOURCE S.cerevisiae DNA. ORGANISM Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 2891) AUTHORS Williams,F.E. and Trumbly,R.J. TITLE Characterization of TUP1: A mediator of glucose repression in Saccharomyces cerevisiae JOURNAL Unpublished (1990) Dept. Biochem. Ohio Med. Coll., Toledo, OH 43699 STANDARD full staff_review COMMENT Draft entry and computer-readable sequence [1] kindly submitted by R.J.Trumbly, 30-JAN-1990. FEATURES from to/span description pept 509 2650 TUP1 protein mRNA 234 2780 TUP1 mRNA signal 108 112 TATA box BASE COUNT 899 a 700 c 530 g 762 t ORIGIN Chromosome III. 1 tgtacatccc aaagacataa acatatgtat ataagaacaa cataaacaaa taaataaacc 61 aggaaagccc taatttaccc ttctttttgg ctgagcaatc taggagttaa taattttttg 121 gaactttccc cctaacattt ttagagacag aaccctctta cattatcgct accgacggac 181 ctttaatttt tcgttacttc tcaaaaaaca ctgaaaaact gcgaaaaaat taaaaagctc 241 tcccgtcaaa gcaacaaaca acaaaacaaa ataacaagta cataagtaaa caaatagaga 301 gaaattcccc catctacccc caattgataa acatcagcga agcaagaaca actggctgaa 361 cacgtgcccc tctatctgtc cttctgcaat tgtttaattt tctttcacgc caagttacct 421 ttcgcacacc actactcttt ttctattgtt tttttgtctt ttttgataag caggggaaga 481 aagaaatcag ctttccatcc aaaccaatat gactgccagc gtttcgaata cgcagaataa 541 gctgaatgag cttctcgatg ccatcagaca ggagtttctc caagtctcac aagaggcaaa 601 tacctaccgt cttcaaaacc aaaaggatta cgatttcaaa atgaaccagc agctggctga 661 gatgcagcag ataagaaaca ccgtctacga actggagcta actcacagga aaatgaagga 721 cgcgtacgaa gcagagatca agcacttgaa actagggctg gagcaaagag accatcaaat 781 tgcatctttg accgtccagc aacagcagca acagcaacag cagcaacagg tccagcagca 841 tttacaacag caacaacagc agctagccgc tgcatctgca tctgttccag ttgcgcaaca 901 accaccggct actacttcgg ccaccgccac tccagcagca aacacaacta ctggttcgcc 961 atcggccttc ccagtacaag ctagccgtcc taatctggtt ggctcacagt tgcctaccac 1021 cactttgcct gtggtgtcct caaacgccca acaacaacta ccacaacagc aactgcaaca 1081 gcagcaactt caacaacagc aaccacctcc ccaggtttcc gtggcaccat tgagtaacac 1141 agccatcaac ggatctccta cttctaaaga gaccactact ttaccctctg tcaaggcacc 1201 tgaatctacg ttgaaagaaa ctgaaccgga aaataataat acctcgaaga taaatgacac 1261 cggatccgcc accacggcca ccactaccac cgcaactgaa actgaaatca aacctaagga 1321 ggaagacgcc accccggcta gtttgcacca ggatcactac ttagtccctt ataatcaaag 1381 agcaaaccac tctaaaccta tcccaccttt ccttttggat ctagattccc agtctgttcc 1441 cgatgctctg aagaagcaaa caaatgatta ttatatttta tacaacccgg cactaccaag 1501 agaaattgac gttgagttac acaaatcttt ggatcatact tcagttgttt gttgcgtgaa 1561 gttcagtaac gatggtgaat acttagccac aggctgcaac aaaactactc aagtgtatcg 1621 cgtttcagac ggttctctgg tggcccgttt atctgacgat tctgctgcca ataaccatcg 1681 aaattcgatc actgaaaata acaccaccac gtccacggat aacaatacaa tgacaaccac 1741 tactaccacc acaattacta ccacagcgat gacttcggca gcagaattgg caaaagatgt 1801 ggaaaacctg aacacttcgt cttccccatc atccgacttg tatatccgtt cagtgtgttt 1861 ttctccagat gggaaatttt tggcaacagg tgctgaagac agactgatta gaatttggga 1921 tattgaaaat agaaagattg ttatgattct tcaaggccac gaacaagata tttattcatt 1981 ggactacttt ccctcaggtg acaaattagt ctccggttct ggtgaccgta ccgttcgtat 2041 ttgggactta cgtacaggcc agtgttcatt gactttatcc attgaagatg gtgttaccac 2101 cgtcgctgta tcaccaggtg atggtaaata catcgctgct ggttctctag atcgtgctgt 2161 gagagtttgg gattccgaga ccggattctt ggtggaaaga ctagattcgg aaaacgaatc 2221 cggtacaggc cacaaggact ctgtttatag cgttgtcttc acgagagatg gacaaagcgt 2281 tgtatccggc tcattagata gatctgttaa gctctggaat ttgcagaatg caaacaacaa 2341 gagcgattcg aaaactccaa attccggcac ttgtgaagtt acgtatatcg ggcataaaga 2401 ctttgtattg tccgtggcca ccacacaaaa tgatgagtac atcttgtccg gttccaaaga 2461 tcgtggtgtc ctgttttggg ataagaaatc cggcaatccg ttattgatgt tgcaaggtca 2521 taggaattca gttatatctg tggctgtggc aaacgggtct tcgctgggtc cagaatataa 2581 cgtttttgct actggtagcg gtgattgtaa agcaaggatt tggaagtata aaaaaatagc 2641 gccaaattaa gaacagaaca caaaaggaac actttacaaa tgtaactaac taaactattc 2701 ttcaattcat tgtcattata tctttctctc tattcttttt tatctactta tttgttatgt 2761 tatgatccag gtacgcttta aaacaaacag ttactttcct caccattcat cccttcccct 2821 ccttttcctg tgtctgaata ttgcggttca ttattctttg atatgaattt atttgtgtat 2881 tgtataagct t //