Path: utzoo!utgpu!watserv1!watmath!uunet!cs.utexas.edu!usc!snorkelwacker!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004131629.AA06326@life.lanl.gov.LANL.GOV> Date: 13 Apr 90 16:29:55 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 251 Approved: lear@genbank.bio.net Checksum: 45832 17 LOCUS CHTHYPAB 2659 bp ds-DNA BCT 12-FEB-1990 DEFINITION C.trachomatis HypA and HypB protein genes, complete cds. ACCESSION M31739 KEYWORDS . SOURCE C.trachomatis (serovar A, isolate HAR-13) elementary body DNA, clone pTA571. ORGANISM Chlamydia trachomatis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rickettsias and Chlamydias; Chlamydiales; Chlamydiaceae. REFERENCE 1 (bases 1 to 2659) AUTHORS Morrison,R.P., Lyng,K., Su,H., Yuan,Y. and Zhang,Y.-X. JOURNAL Unpublished (1990) Rocky Mountain Laboratory, Hamilton, MT 59840 STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by R.P.Morrison, 31-JAN-1990. FEATURES from to/span description pept 441 779 HypA protein pept 817 2451 HypB protein BASE COUNT 830 a 527 c 613 g 689 t ORIGIN 1 gtcgattttt gtgatgctcg tcagggggcg gagcctatgg aaaaacgcca gcaacgcggc 61 ctttttacgg ttcctggcct tttgctggcc ttttgctcac atgttctttc ctgcgttatc 121 ccctgattct gtggataacc gtattaccgc ctttgagtga gctgataccg ctcgccgcag 181 ccgaacgacc gagcgcagcg agtcagtgag cgaggaagcg gaagagcgcc caatacgcaa 241 accgcctctc cccgcgcgtt ggccgattca ttaatgcagc tggcacgaca ggtttcccga 301 ctggaaagcg ggcagtgagc gcaacgcaat taatgtgagt tagctcactc attaggcacc 361 ccaggcttta cactttatgc ttccggctcg tatgttgtgt ggaattgtga gcggataaca 421 atttcacaca ggaaacagct atgaccatga ttacgaattc gagctcggta cccggggatc 481 aagcaacgac cctcaagatt aaacctttgg gagatagaat tttagttaaa agagaagaag 541 aagcttccac tgcaagaggc ggaatcattc ttcctgacac tgccaagaaa aagcaagata 601 gagctgaagt tttagctcta ggaacaggca aaaaagatga taaagggcag caacttcctt 661 ttgaagttca ggttggtgac atcgttttaa ttgataaata ttctggccaa gaacttactg 721 tcgaaggtga agagtacgtc atcgttcaaa tgagcgaagt tatcgcagtt ctgcaataaa 781 aactaagaga gtgaagaaga tttaaggagc gcatcaatgg tcgctaaaaa cattaaatac 841 aacgaagaag ccagaaagaa aattcaaaaa ggagttaaga ctttagctga agctgtaaaa 901 gtcactctag ggcctaaagg acgacatgtt gtcatagata aaagcttcgg atcccctcaa 961 gtaactaaag atggtgttac cgttgcgaaa gaagttgagc ttgccgacaa acatgaaaat 1021 atgggcgctc aaatggtcaa agaagtcgcc agcaaaactg ctgacaaagc tggagacgga 1081 actacaacag ctactgttct tgctgaagct atctatacag aaggattacg caatgtaaca 1141 gctggagcaa atccaatgga cctcaaacga ggtattgata aagctgttaa ggttgttgtt 1201 gatcaaatca aaaaaatcag caagcctgtt cagcatcata aagaaattgc tcaagttgca 1261 acaatttctg ctaataatga tgcagaaatc gggaatctga ttgctgaagc aatggagaaa 1321 gttggtaaaa acggctctat cactgttgaa gaagcaaaag gatttgaaac cgttttggat 1381 gttgttgaag gaatgaattt caatagaggt tacctctcta gctacttcgc aacaaatcca 1441 gaaactcaag aatgtgtatt agaagacgct ttggttctaa tctacgataa gaaaatttct 1501 gggatcaaag atttccttcc tattttacaa caagttgctg aatccggccg tcctcttctt 1561 attatagcag aagacattga aggcgaagct ttagctactt tggtcgtgaa cagaattcgt 1621 ggaggattcc gggtttgcgc agttaaagct ccaggctttg gagatagaag aaaagctatg 1681 ttggaagaca tcgctatctt aactggcggt caactcatta gcgaagagtt gggcatgaaa 1741 ttagaaaacg ctaacttagc tatgttaggt aaagctaaaa aagttatcgt ttctaaagaa 1801 gacacgacca tcgtcgaagg aatgggtgaa aaagaagctt tagaagctcg ttgcgaaagc 1861 atcaaaaaac aaattgaaga cagctcttct gattacgata aagaaaaact ccaagagcgt 1921 cttgctaagc tctctggtgg agtagcagtc attcgcgttg gagctgcaac agagattgag 1981 atgaaagaga aaaaagatcg tgtagacgat gctcaacatg ctacaatcgc tgctgttgaa 2041 gaaggaattc ttcctggtgg aggaacagca ttaatccgtt gtatccctac tcttgaagcc 2101 ttcttgccaa tgttgactaa tgaagatgag caaattggag ctcgcattgt tttgaaagct 2161 ctttccgctc ctttgaaaca aattgctgca aacgcaggaa aagaaggtgc tatcatcttc 2221 caacaagtta tgtcccgttc tgcgaacgaa ggatatgatg cattgcgtga tgcatacaca 2281 gatatgcttg aagctggtat tttagatcct gctaaagtaa cccgttctgc tttagaaagc 2341 gcggcttccg tagctggatt acttttgaca acagaagctc tcattgcaga gattccagaa 2401 gaaaaacctg ctgcagctcc agcaatgcct ggcgcaggaa tggactatta attcctctaa 2461 tgggaacaaa tagattcttc gagcctcgtt tccaaaagga acgaggcttt tttttagatt 2521 cctaatattt ctctattcct ctatcgtaaa catctagtgc ttacgaccat ccttttctat 2581 gtttaaacta atcaagagcg catttctcat agcctgttgt attgtagggt acttctggat 2641 aaaaaaagaa agtattgtt // LOCUS HUMCA1XIA 6158 bp ss-mRNA PRI 15-MAR-1989 DEFINITION Human alpha-1 type XI collagen (COL11A1) mRNA, complete cds. ACCESSION J04177 J05407 KEYWORDS alpha-1 (XI) collagen; collagen; type XI collagen. SOURCE Human placenta fibroblast, cDNA to mRNA, clone OK4 [1]. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1773 to 6158) AUTHORS Bernard,M., Yoshioka,H., Rodriguez,E., van der Rest,M., Kimura,T., Ninomiya,Y., Olsen,B.R. and Ramirez,F. TITLE Cloning and sequencing of pro-alpha-1(XI) collagen cDNA demonstrates that type XI belongs to the fibrillar class of collagens and reveals that the expression of the gene is not restricted to cartilagenous tissue JOURNAL J. Biol. Chem. 263, 17159-17166 (1988) STANDARD full staff_review REFERENCE 2 (bases 1 to 1835) AUTHORS Yoshioka,H. and Ramirez,F. TITLE Pro alpha-1(XI) collagen, structure of the amino-terminal propeptide and expression of the gene in tumor cell lines JOURNAL J. Biol. Chem. (1990) In press STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by F.Ramirez, 02-FEB-1990; for [2] by M.Bernard, 21-SEP-1988. FEATURES from to/span description pept 162 5582 alpha-1 (type XI) collagen precursor /nomgen="COL11A1" /map="1p21" /hgml_locus_uid="LH0170J" sigp 162 269 alpha-1 (type XI) collagen signal peptide matp 270 1745 alpha-1 (type XI) collagen matp 5013 5579 alpha-1 (type XI) collagen BASE COUNT 1693 a 1355 c 1746 g 1361 t 3 others ORIGIN 1 aaccatcaaa tttagaagaa aaagcccttt gactttttcc ccctctccct ccccaatggc 61 tgtgtagcaa acatccctgg cgataccttg gaaaggacga agttggtctg cagtcgcaat 121 ttcgtgggtt gagttcacag ttgtgagtgc ggggctcgga gatggagccg tggtcctcta 181 ggtggaaaac gaaacggtgg ctctgggatt tcaccgtaac aaccctcgca ttgaccttcc 241 tcttccaagc tagagaggtc agaggagctg ctccagttga tgtactaaaa gcactagatt 301 ttcacaattc tccagaggga atatcaaaaa caacgggatt ttgcacaaac agaaagaatt 361 ctaaaggctc agatactgct tacagagttt caaagcaagc acaactcagt gccccaacaa 421 aacagttatt tccaggtgga actttcccag aagacttttc aatactattt acagtaaaac 481 caaaaaaagg aattcagtct ttccttttat ctatatataa tgagcatggt attcagcaaa 541 ttggtgttga ggttgggaga tcacctgttt ttctgtttga agaccacact ggaaaacctg 601 ccccagaaga ctatcccctc ttcagaactg ttaacatcgc tgacgggaag tggcatcggg 661 tagcaatcag cgtggagaag aaaactgtga caatgattgt tgattgtaag aagaaaacca 721 cgaaaccact tgatagaagt gagagagcaa ttgttgatac caatggaatc acggtttttg 781 gaacaaggat tttggatgaa gaagtttttg agggggacat tcagcagttt ttgatcacag 841 gtgatcccaa ggcagcatat gactactgtg agcattatag tccagactgt gactcttcag 901 cacccaaggc tgctcaagct caggaacctc agatagatga gtatgcacca gaggatataa 961 tcgaatatga ctatgagtat ggggaagcag agtataaaga ggctgaaagt gtaacagagg 1021 gacccactgt aactgaggag acaatagcac agacggaggc aaacatcgtt gatgattttc 1081 aagaatacaa ctatggaaca atggaaagtt accagacaga agctcctagg catgtttctg 1141 ggacaaatga gccaaatcca gttgaagaaa tatttactga agaatatcta acgggagagg 1201 attatgattc ccagaggaaa aattctgagg atacactata tgaaaacaaa gaaatagacg 1261 gcagggattc tgatcttctg gtagatggag atttaggcga atatgatttt tatgaatata 1321 aagaatatga agataaacca acaagccccc ctaatgaaga atttggtcca ggtgtaccag 1381 cagaaactga tattacagaa acaagcataa atggccatgg tgcatatgga gagaaaggac 1441 agaaaggaga accagcagtg gttgagcctg gtatgcttgt cgaaggacca ccaggaccag 1501 caggacctgc aggtattatg ggtcctccag gtctacaagg ccccactgga ccccctggtg 1561 accctggcga taggggcccc ccaggacgtc ctggcttacc aggggctgat ggtctacctg 1621 gtcctcctgg tactatgttg atgttaccgt tccgttatgg tggtgatggt tccaaaggac 1681 caaccatctc tgctcaggaa gctcaggctc aagctattct tcagcaggct cggattgctc 1741 tgagaggccc acctggccca atgggtctaa ctggaagacc aggtcctgtg ggggggcctg 1801 gttcatctgg ggccaaaggt gagagtggtg atccaggtcc tcagggccct cgaggcgtcc 1861 agggtccccc tggtccaacg ggaaaacctg gaaaaagggg tcgtccaggt gcagatggag 1921 gaagaggaat gccaggagaa cctggggcaa agggagatcg agggtttgat ggacttccgg 1981 gtctgccagg tgacaaaggt cacaggggtg aacgaggtcc tcaaggtcct ccaggtcctc 2041 ctggtgatga tggaatgagg ggagaagatg gagaaattgg accaagaggt cttccaggtg 2101 aagctggccc acgaggtttg ctgggtccaa ggggaactcc aggagctcca gggcagcctg 2161 gtatggcagg tgtagatggc cccccaggac caaaagggaa catgggtccc caaggggagc 2221 ctgggcctcc aggtcaacaa gggaatccag gacctcaggg tcttcctggt ccacaaggtc 2281 caattggtcc tcctggtgaa aaaggaccac aaggaaaacc aggacttgct ggacttcctg 2341 gtgctgatgg gcctcctggt catcctggga aagaaggcca gtctggagaa aagggggctc 2401 tgggtccccc tggtccacaa ggtcctattg gatnnccggg cccccgggga gtaaagggag 2461 cagatggtgt cagaggtctc aagggatcta aaggtgaaaa gggtgaagat ggttttccag 2521 gattcaaagg tgacatgggt ctaaaaggtg acagaggaga agttggtcaa attggcccaa 2581 gagggnaaga tggccctgaa ggacccaaag gtcgagcagg cccaactgga gacccaggtc 2641 cttcaggtca agcaggagaa aagggaaaac ttggagttcc aggattacca ggatatccag 2701 gaagacaagg tccaaagggt tccactggat tccctgggtt tccaggtgcc aatggagaga 2761 aaggtgcacg gggagtagct ggcaaaccag gccctcgggg tcagcgtggt ccaacgggtc 2821 ctcgaggttc aagaggtgca agaggtccca ctgggaaacc tgggccaaag ggcacttcag 2881 gtggcgatgg ccctcctggc cctccaggtg aaagaggtcc tcaaggacct cagggtccag 2941 ttggattccc tggaccaaaa ggccctcctg gaccaccagg aaggatgggc tgcccaggac 3001 accctgggca acgtggggag actggatttc aaggcaagac cggccctcct gggccagggg 3061 gagtggttgg accacaggga ccaaccggtg agactggtcc aataggggaa cgtgggtatc 3121 ctggtcctcc tggccctcct ggtgagcaag gtcttcctgg tgctgcagga aaagaaggtg 3181 caaagggtga tccaggtcct caaggtatct cagggaaaga tggaccagca ggattacgtg 3241 gtttcccagg ggaaagaggt cttcctggag ctcagggtgc acctggactg aaaggagggg 3301 aaggtcccca gggcccacca ggtccagttg gctcaccagg agaacgtggg tcagcaggta 3361 cagctggccc aattggttta cgagggcgcc cgggacctca gggtcctcct ggtccagctg 3421 gagagaaagg tgctcctgga gaaaaaggtc cccaagggcc tgcagggaga gatggagttc 3481 aaggtcctgt tggtctccca gggccagctg gtcctgccgg ctcccctggg gaagacggag 3541 acaagggtga aattggtgag ccgggacaaa aaggcagcaa gggtggcaag ggagaaaatg 3601 gccctcccgg tcccccaggt cttcaaggac cagttggtgc ccctggaatt gctggaggtg 3661 atggtgaacc aggtcctaga ggacagcagg ggatgtttgg gcaaaaaggt gatgagggtg 3721 ccagaggctt ccctggacct cctggtccaa taggtcttca gggtctgcca ggcccacctg 3781 gtgaaaaagg tgaaaatggg gatgttggtc catgggggcc acctggtcct ccaggcccaa 3841 gaggccctca aggtcccaat ggagctgatg gaccacaagg acccccaggt tctgttggtt 3901 cagttggtgg tgttggagaa aagggtgaac ctggagaagc aggaaaccca gggcctcctg 3961 gggaagcagg tgtaggcggt cccaaaggag aaagaggaga gaaaggggaa gctggtccac 4021 ctggagctgc tggacctcca ggtgccaagg ggccgccagg tgatgatggc cctaagggta 4081 acccgggtcc tgttggtttt cctggagatc ctggtcctcc tggggaactt ggccctgcag 4141 gtcaagatgg tgttggtggt gacaagggtg aagatggaga tcctggtcaa ccgggtcctc 4201 ctggcccatc tggtgaggct ggcccaccag gtcctcctgg aaaacgaggt cctcctggag 4261 ctgcaggtgc agagggaaga caaggtgaaa aaggtgctaa gggggaagca ggtgcagaag 4321 gtcctcctgg aaaaaccggc ccagtcggtc ctcagggacc tgcaggaaag cctggtccag 4381 aaggtcttcg gggcatccct ggtcctgtgg gagaacaagg tctccctgga gctgcaggcc 4441 aagatggacc acctggtcct atgggacctc ctggcttacc tggtctcaaa ggtgaccctg 4501 gctccaaggg tgaaaaggga catcctggtt taattggcct gattggtcct ccaggagaac 4561 aaggggaaaa aggtgaccga gggctccctg gaactcaagg atctccagga gcaaaagggg 4621 atgggggaat tcctggtcct gctggtccct taggtccacc tggtcctcca ggcttaccag 4681 gtcctcaagg cccaaagggt aacaaaggct ctactggacc cgctggccag aaaggtgaca 4741 gtggtcttcc agggcctcct gggcctccag gtccacctgg tgaagtcatt cagcctttac 4801 caatcttgtc ctccaaaaaa acgagaagac atactgaagg catgcaagca gatgcagatg 4861 ataatattct tgattactcg gatggaatgg aagaaatatt tggttccctc aattccctga 4921 aacaagacat cgagcatatg aaatttccaa tgggtactca gaccaatcca gcccgaactt 4981 gtaaagacct gcaactcagc catcctgact tcccagatgg tgaatattgg attgatccta 5041 accaaggttg ctcaggagat tccttcaaag tttactgtaa tttcacatct ggtggtgaga 5101 cttgcattta tccagacaaa aaatctgagg gagtaagaat ttcatcatgg ccaaaggaga 5161 aaccaggaag ttggtttagt gaatttaaga ggggaaaact gctttcatac ttagatgttg 5221 aaggaaattc catcaatatg gtgcaaatga cattcctgaa acttctgact gcctctgctc 5281 ggcaaaattt cacctaccac tgtcatcagt cagcagcctg gtatgatgtg tcatcaggaa 5341 gttatgacaa agcacttcgc ttcctgggat caaatgatga ggagatgtcc tatgacaata 5401 atccttttat caaaacactg tatgatggtt gtacgtccag aaaaggctat gaaaaaactg 5461 tcattgaaat caatacacca aaaattgatc aagtacctat tgttgatgtc atgatcagtg 5521 actttggtga tcagaatcag aagttcggat ttgaagttgg tcctgtttgt tttcttggct 5581 aagattaaga caaagaacat atcaaatcaa cagaaaatgt accttggtgc caccaaccca 5641 ttttgtgcca catgcaagtt ttgaataagg atgtatggaa aacaacgctg catatacagg 5701 taccatttag gaaataccga tgcctttgtg ggggcagaat cacagacaaa agctttgaaa 5761 atcataaaga tataagttgg tgtggctaag atggaaacag ggctgattct tgattcccaa 5821 ttctcaactc tccttttcct atttgaattt ctttggtgct gtagaaaaca aaaaaagaaa 5881 aatatatatt cataaaaaat atggtgctca ttctcatcca tccaggatgt actaaaacag 5941 tgtgtttaat aaattgtaat tattttgtgt acagttctat actgttatct gtgtccattt 6001 ccaaaacttg cacgtgtccc tgaattccgc tgactctaat ttatgaggat gccgaactct 6061 gatggcaata atatatgtat tatgaaaatg aagttatgat ttccgatgac cctaagtccc 6121 tttctttggt taatgatgaa attcctttgt gtgtgttt // LOCUS STYENVM 1656 bp ds-DNA BCT 14-FEB-1990 DEFINITION S.typhimurium envM protein gene, complete cds. ACCESSION M31806 KEYWORDS . SOURCE S.typhimurium (strain AG701i50) DNA, clone KF501. ORGANISM Salmonella typhimurium Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 1656) AUTHORS Turnowsky,F., Fuchs,K., Jeschek,C. and Hoegenauer,G. TITLE envM genes of Salmonella typhimurium and Escherichia coli JOURNAL J. Bacteriol. 171, 6555-6565 (1989) STANDARD simple staff_review FEATURES from to/span description pept 259 558 ORF-1 pept 676 1464 envM protein BASE COUNT 413 a 395 c 394 g 454 t ORIGIN 1 cgatgatatc tcttaaatac ctttctgata tctggcaact atgatttccg atctgaaatg 61 taaacggcat atgtctcatc ctctgaaaat ttattataat acacatgcaa acatataaaa 121 acctgatttg taactactgt aaccacctga tttccaaaat ttttcatatt cagtattact 181 ctgcatcaat aaatagagaa aaccttcagc acctaaaaaa gaaattattt ttgttaagca 241 tttgctggtt aaagttacat gtccataaca tcgctaatag gtgaggtaaa ccatttggat 301 gaatattcag gcttcctaca gaacctttat ttgtctggtg gaaagcgcat cgctatcgta 361 cttgctatcc gtcccggtgt ctctggttgg atgaggcgaa ccttacacca gctggtatac 421 tgcaccgtag ggcctgtccc attagactct ttgatttgcc agtttggccc tggggagtgc 481 tcaaaatcct cagggacttc gttaccgtgt ggttttagaa cgtcacctgc cggagatagc 541 ggcggaaaaa tagcgtgaca cacggggcca ggagtgggat ataatttcag actaatttcg 601 aataatgttg aaaagttgct gttaaccatt gttcgtaaaa gcaaaaaata agcaatgact 661 ataaggatta aagctatggg ttttctttcc ggtaagcgca ttctggtcac tggcgtggcc 721 agtaaactgt ccatcgccta cggtatcgca caggcgatgc accgcgaagg agctgaactg 781 gcgttcacct accagaacga caaactgaaa ggccgcgtag aagaatttgc tgcccagctg 841 ggttccagca tcgttttacc gtgtgatgtc gctgaagatg ccagcattga cgctatgttt 901 gcggagctgg gtaacgtttg gccgaaattt gacggttttg tacactcgat cggtttcgcg 961 cctggcgatc agctggacgg cgattatgtt aatgcggtta cccgcgaagg ctttaaagtc 1021 gctcacgata ttagctctta cagctttgtt gccatggcga aagcctgccg caccatgctg 1081 aatccgggtt ctgcgctgtt gaccttgtct tatctgggag cggagcgcgc catcccgaac 1141 tacaatgtca tgggtctggc gaaagcctct ctggaagcca acgtgcgtta tatggcaaac 1201 gctatgggac cggaaggggt tcgcgtcaac gccatctctg cgggtccaat ccgcacgctg 1261 gcggcgtccg gtattaaaga cttccgtaaa atgctggcgc attgtgaagc cgttacgcca 1321 attcgtcgca ccgtgaccat tgaagatgtg ggtaactcag cggcgtttct gtgttccgat 1381 ctctcggcag gcatttctgg cgaagtcgtc catgttgacg gcgggttcag cattgcggca 1441 atgaatgaac tggaactgaa gtaagcgcat taagtttatt agcgggcggc acggctgtgc 1501 tgccccattc ccctcactca ccactcatct cgttatatag cgttctgata tttgttatca 1561 cctaacaatc tttcatccct ttcccgcata cgccaggata atccagcata aacgatccga 1621 cgccgaatca ttatcgatcg ccatttcatc ctcggg //