Path: utzoo!utgpu!watserv1!watmath!uunet!samsung!usc!apple!bionet!daemon From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: <9004132111.AA11118@life.lanl.gov.LANL.GOV> Date: 13 Apr 90 21:11:00 GMT Sender: daemon@genbank.BIO.NET Distribution: bionet Lines: 190 Approved: lear@genbank.bio.net Checksum: 54683 12 LOCUS CECCOLE3A 3066 bp ds-DNA BCT 31-AUG-1987 DEFINITION Plasmid ColE3-CA38 colicin E3, immunity proteins E3 and E8, and lysis genes, complete cds. ACCESSION J01574 J01575 M14038 X02397 KEYWORDS colicin; colicin release protein; immune response gene; immunity protein; lysis protein. SOURCE Plasmid ColE3-CA38 (from E.coli) DNA. ORGANISM Plasmid Colicin E3-CA38 Prokaryota; Bacteria. REFERENCE 1 (bases 1663 to 2662) AUTHORS Masaki,H. and Ohta,T. TITLE A plasmid region encoding the active fragment and the inhibitor protein of colicin E3-CA38 JOURNAL FEBS Lett. 149, 129-132 (1982) STANDARD full staff_review REFERENCE 2 (bases 1612 to 2662) AUTHORS Mock,M., Miyada,C.G. and Gunsalus,R.P. TITLE Nucleotide sequence for the catalytic domain of colicin E3 and its immunity protein. Evidence for a third gene overlapping colicin JOURNAL Nucleic Acids Res. 11, 3547-3557 (1983) STANDARD full staff_review REFERENCE 3 (bases 2251 to 3066) AUTHORS Watson,R.J., Lau,P.C.K., Vernet,T. and Visentin,L.P. TITLE Characterization and nucleotide sequence of a colicin-release gene in the hic region of plasmid ColE3-CA38 JOURNAL Gene 29, 175-184 (1984) STANDARD full staff_review REFERENCE 4 (bases 2251 to 3066) AUTHORS Watson,R.J., Lau,P.C.K., Vernet,T. and Visentin,L.P. TITLE Corrigenda: Characterization and nucleotide sequence of a colicin-release gene in the hic region of plasmid ColE3-CA38 JOURNAL Gene 42, 351-355 (1986) STANDARD full staff_review REFERENCE 5 (bases 1 to 2854) AUTHORS Masaki,H. and Ohta,T. TITLE Colicin E3 and its immunity genes JOURNAL J. Mol. Biol. 182, 217-227 (1985) STANDARD simple automatic REFERENCE 6 (bases 1 to 3066; revises [5]) AUTHORS Akutsu,A., Masaki,H. and Ohta,T. TITLE Molecular structure and immunity specificity of colicin E6, an evolutionary intermediate between E-group colicins and cloacin DF13 JOURNAL J. Bacteriol. 171, 6430-6436 (1989) STANDARD simple staff_review COMMENT [1] refers to colicin E3 as protein A and the immunity protein E3 as protein B. [2] refers to the colE3 gene as the ceaC gene and the immE3 gene as the ceaC gene. Draft entry and printed copy of sequence for [3] kindly provide by R.J.Watson, May 1985. FEATURES from to/span description pept 331 1986 colicin E3 pept 1996 2253 immunity protein E3 pept 2420 2677 immunity protein E8 (gtg start codon) pept 2739 2882 lysis protein binding 317 322 ribosome binding site (pot.) binding 1988 1993 ribosome binding site (pot.) revision 132 134 atc in [6]; attc in [5] revision 755 756 gc in [4]; cg in [3] revision 1265 1267 gca in [4]; ga in [3] revision 1348 1349 tt in [4]; ttt in [3] BASE COUNT 897 a 546 c 796 g 827 t ORIGIN 1 aactcggttt taatcagacc tggcatgagt ggaagcggga cgaacagcac aggcaacaac 61 aacgccgccc cgggcacttc cggggcatga gtatgtgata tccggggctg caccccggac 121 cccgccaaca catcacgggc cacaaaattt tttgtggccc gctctgcgtt ttctaagtgt 181 tatccctcct gatttctaaa aaattttcca cctgaacttg acagaaaaaa cgatgacgag 241 tactttttga tctgtacata aacccagtgg ttttatgtac agtattaatc gtgtaatcaa 301 ttgttttaac gcttaaaaga gggaattttt atgagcggtg gcgatggacg cggccataac 361 acgggcgcgc atagcacaag tggtaacatt aatggtggcc cgaccgggct tggtgtaggt 421 ggtggtgctt ctgatggctc cggatggagt tcggaaaata acccgtgggg tggtggttcc 481 ggtagcggca ttcactgggg tggtggttcc ggtcatggta atggcggggg gaatggtaat 541 tccggtggtg gttcgggaac aggcggtaat ctgtcagcag tagctgcgcc agtggcattt 601 ggttttccgg cactttccac tccaggagct ggcggtctgg cggtcagtat ttcagcggga 661 gcattatcgg cagctattgc tgatattatg gctgccctga aaggaccgtt taaatttggt 721 ctttgggggg tggctttata tggtgtattg ccatcacaaa tagcgaaaga tgaccccaat 781 atgatgtcaa agattgtgac gtcattaccc gcagatgata ttactgaatc acctgtcagt 841 tcattacctc tcgataaggc aacagtaaac gtaaatgttc gtgttgttga tgatgtaaaa 901 gacgagcgac agaatatttc ggttgtttca ggtgttccga tgagtgttcc ggtggttgat 961 gcaaaaccta ccgaacgtcc gggtgttttt acggcatcaa ttccaggtgc acctgttctg 1021 aatatttcag ttaataacag tacgccagca gtacagacat taagcccagg tgttacaaat 1081 aatactgata aggatgttcg cccggcagga tttactcagg gtggtaatac cagggatgca 1141 gttattcgat tcccgaagga cagcggtcat aatgccgtat atgtttcagt gagtgatgtt 1201 cttagccctg accaggtaaa acaacgtcaa gatgaagaaa atcgccgtca gcaggaatgg 1261 gatgctacgc atccggttga agcggctgag cgaaattatg aacgcgcgcg tgcagagctg 1321 aatcaggcaa atgaagatgt tgccagaaat caggagcgac aggctaaagc tgttcaggtt 1381 tataattcgc gtaaaagcga acttgatgca gcgaataaaa ctcttgctga tgcaatagct 1441 gaaataaaac aatttaatcg atttgcccat gacccaatgg ctggcggtca cagaatgtgg 1501 caaatggccg ggcttaaagc ccagcgggcg cagacggatg taaataataa gcaggctgca 1561 tttgatgctg ctgcaaaaga gaagtcagat gctgatgctg cattgagttc tgctatggaa 1621 agcaggaaga agaaagaaga taagaaaagg agtgctgaaa ataatttaaa cgatgaaaag 1681 aataagccca gaaaaggttt taaagattac gggcatgatt atcatccagc tccgaaaact 1741 gagaatatta aagggcttgg tgatcttaag cctgggatac caaaaacacc aaagcagaat 1801 ggtggtggaa aacgcaagcg ctggactgga gataaagggc gtaagattta tgagtgggat 1861 tctcagcatg gtgagcttga ggggtatcgt gccagtgatg gtcagcatct tggctcattt 1921 gaccctaaaa caggcaatca gttgaaaggt ccagatccga aacgaaatat caagaaatat 1981 ctttgagagg aagttatggg acttaaattg gatttaactt ggtttgataa aagtacagaa 2041 gattttaagg gtgaggagta ttcaaaagat tttggagatg acggttcagt tatggaaagt 2101 ctaggtgtgc cttttaagga taatgttaat aacggttgct ttgatgttat agctgaatgg 2161 gtacctttgc tacaaccata ctttaatcat caaattgata tttccgataa tgagtatttt 2221 gtttcgtttg attatcgtga tggtgattgg tgatcaaata ttatcaggga tgagttgata 2281 tacgggcttc tagtgttcat ggatgaacgc tggagcctcc aaatgtagaa atgttatatt 2341 ttttattgag ttcttggtta taattgctcc gcaatgattt aaataagcat tatttaaaac 2401 attctcagga gaggtgaagg tggagctaaa aaaaagtatt ggtgattaca ctgaaaccga 2461 attcaaaaaa tttattgaag acatcatcaa ttgtgaaggt gatgaaaaaa aacaggatga 2521 taacctcgag tattttataa atgttactga gcatcctagt ggttctgatc tgatttatta 2581 cccagaaggt aataatgatg gtagccctga aggtgttatt aaagagatta aagaatggcg 2641 agccgctaac ggtaagtcag gatttaaaca gggctgaaat atgaatgccg gttgtttatg 2701 gatgaatggc tggcattctt tcacaacaag gagtcgttat gaaaaaaata acagggatta 2761 ttttattgct tcttgcagtc attattctgt ctgcatgtca ggcaaactat atccgggatg 2821 ttcagggcgg gaccgtatct ccgtcatcaa cagctgaagt gaccggatta gcaacgcagt 2881 aacccgaaat cctctttgac aaaaacaaag cgtgtcaggc tgattctgat gcgctttttt 2941 tttgaaatgt cacaaaaatt ccatgtggga gatgggatct aaaatcctcg tgcagaactt 3001 tccatccagg gggagaaaac ttgtcgtttt gagccgttcg gtgttcagaa cgcacgaaac 3061 cgatcg // LOCUS CECCOLE6A 3065 bp ds-DNA BCT 16-FEB-1990 DEFINITION Plasmid ColE6-CT14 colicin E6, immunity proteins E6 and E8, and lysis protein genes, complete cds. ACCESSION M31808 KEYWORDS colicin E6; immunity protein; lysis protein. SOURCE Plasmid ColE6-CT14 (from E.coli) DNA. ORGANISM Plasmid Colicin E6-CT14 Prokaryota; Bacteria. REFERENCE 1 (bases 1 to 3065) AUTHORS Akutsu,A., Masaki,H. and Ohta,T. TITLE Molecular structure and immunity specificity of colicin E6, an evolutionary intermediate between E-group colicins and cloacin DF13 JOURNAL J. Bacteriol. 171, 6430-6436 (1989) STANDARD simple staff_review FEATURES from to/span description pept 331 1986 colicin E6 pept 1996 2253 immunity protein E6 pept 2420 2677 immunity protein E8 (gtg start codon) pept 2739 2882 lysis protein BASE COUNT 903 a 545 c 799 g 818 t ORIGIN 1 aactcggttt taatcagacc tggcatgagt ggaagcggga cgaacagcac aggcaacaac 61 aacgccgccc cgggcacttc cggggcatga gtatgtgata tccggggctg caccccggac 121 cccgccaaca catcacgggc cacaaaattt tttgtggccc gctctgcgtt ttctaagtgt 181 tatccctcct gatttctaaa aaattttcca cctgaacttg acagaaaaaa agatgacgag 241 tactttttga tctgtacata aaaccagtgg ttttatgtac agtattaatc atgtaattaa 301 ttgttttaac gcttaaaaga gggaattttt atgagcggtg gcgatggacg cggccataac 361 acgggcgcgc atagcacaag tggtaacatt aatggtggcc cgaccgggct tggtgtaggt 421 ggtggtgctt ctgatggctc cggatggagt tcggaaaata acccgtgggg tggtggttcc 481 ggtagcggca ttcactgggg tggtggttcc ggtcatggta atggcggggg gaatggtaat 541 tccggtggtg gctcgggaac aggcggtaat ctgtcagcag tagctgcgcc agtggcattt 601 ggttttccgg cactttccac tccaggagct ggcggtctgg cggtcagtat ttcagcggga 661 gcattatcgg cagctattgc tgatattatg gctgccctga aaggaccgtt taaatttggt 721 ctttgggggg tggctttata tggtgtattg ccatcacaaa tagcgaaaga tgaccccaat 781 atgatgtcaa agattgtgac gtcattaccc gcagatgata ttactgaatc acctgtcagt 841 tcattacctc tcgataaggc aacagtaaac gtaaatgttc gtgttgttga tgatgtaaaa 901 gacgaacgac agaatatttc ggttgtttca ggtgttccga tgagtgttcc ggtggttgat 961 gcaaaaccta ccgaacgtcc aggtgttttt acggcatcaa ttccaggtgc acctgttctg 1021 aatatttcag ttaataacag tacgccagca gtacagacat taagcccagg tgttacaaat 1081 aatactgata aggatgttcg cccggcagga tttactcagg ggggtaatac cagggatgca 1141 gttattcgat tcccgaagga cagcggtcat aatgccgtat atgtttcagt gagtgatgtt 1201 cttagccctg accaggtaaa acaacgtcag gatgaagaaa atcgccgtca gcaggaatgg 1261 gatgctacgc atccggttga agcggctgag cgaaattatg aacgcgcgcg tgcagagctg 1321 aatcaggcaa atgaagatgt tgccagaaat caggagcgac aggctaaagc tgttcaggtt 1381 tataattcgc gtaaaagcga acttgatgca gcgaataaaa ctcttgctga tgcaatagct 1441 gaaataaaac aatttaatcg atttgcccat gacccaatgg ctggcggtca cagaatgtgg 1501 caaatggccg ggcttaaagc ccagcgggcg cagacggatg taaataataa gcaggctgca 1561 tttgatgctg ctgcaaaaga gaagtcagat gctgatgctg cattgagttc tgctatggaa 1621 agcaggaaga agaaagaaga taagaaaagg agcgctgaaa ataaattaaa cgaggaaaaa 1681 aacaagcctc gcaagggagt taaagattac ggtcatgatt atcatccaga tcctaaaact 1741 gaagatataa aagggctggg tgagttaaaa gagggtaaac caaaaactcc aaagcaaggt 1801 ggtggcggta aacgtgctag atggtatgga gataaagggc gtaagattta tgagtgggac 1861 tctcagcatg gtgagcttga ggggtatcgt gccagtgatg gtcagcatct tggctcattc 1921 gagcctaaga ctggtaatca gttgaaagga cctgatccaa aacgaaatat caaaaagtat 1981 ctttgagagg atgttatggg gcttaaatta catattaatt ggtttgataa gacgaccgag 2041 gaatttaaag gtggtgagta ttcaaaagat tttggagatg atggctcggt cattgaacgt 2101 cttggaatgc ctttaaaaga taatatcaat aatggttggt ttgatgttat agctgaatgg 2161 gtacctttgc tacaaccata ctttaatcat caaattgata tttccgataa tgagtatttt 2221 gtttcgtttg attatcgtga tggtgattgg tgatcaaata ttatcaggga tgagttgatg 2281 tacgggcttc tagtgttcat ggatgaacgc tggagcctcc aaatgtagaa gtgttatatt 2341 ttttattgag ttcttggtta taattgctcc gcaataattt aaataggcat tatttaaaac 2401 attctcagga gaggtgaagg tggagctaaa gaaaagtatt ggtgattaca ctgaaaccga 2461 attcaaaaaa attattgaaa acatcatcaa ttgtgaaggt gatgaaaaaa aacaggatga 2521 taacctcgag cattttataa gtgttactga gcatcctagt ggttctgatc tgatttatta 2581 cccagaaggt aataatgatg gtagccctga agctgttatt aaagagatta aagaatggcg 2641 agctgctaac ggtaagtcag gatttaaaca gggctgaaat atgaatgccg gttgtttaag 2701 gatgaatgac tggcattctt tcacaacaag gagtcgttat gaaaaaaata acagggatta 2761 ttttattgct tcttgcagtc attattctgg ctgcatgtca ggcaaactat atccgtgatg 2821 ttcagggcgg gactgtatca ccgtcgtcaa ctgctgaact gaccggagtg gaaacgcagt 2881 aacccgaaat cctctttgac aaaaacaaag cgtgtcaggc tgattctgat gcgctttttt 2941 ttgaaatgtc acaaaaattc catgtgggag atgggatcta aaatccccgt gcagaacttt 3001 ccatccagag ggagaaaact tgtcgttttg agccgttcgg tgttcagaac gcacgaaacc 3061 gatcg //