Path: utzoo!attcan!uunet!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Database Update Message-ID: Date: 6 Jul 90 12:00:05 GMT Sender: root@genbank.BIO.NET Distribution: bionet Lines: 339 Approved: lear@genbank.bio.net Checksum: 44184 19 LOCUS MUSLRPA 3070 bp ss-mRNA ROD 06-JUL-1990 DEFINITION Mouse leukocyte common antigen-related phosphatase mRNA, complete cds. ACCESSION M36033 M33671 KEYWORDS leukocyte common antigen-related phosphatase; protein-tyrosine-phosphate phosphohydrolase; tyrosine phosphatase. SOURCE Mouse (strain (C57BL/6 X DBA/2)F1) pre-B cell line 70Z/3, cDNA to mRNA, clones lambda-mLRP-[B20,C26]. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 3070) AUTHORS Matthews,R.J., Cahir,E.D. and Thomas,M.L. TITLE Identification of an additional member of the protein-tyrosine-phosphatase family: Evidence for alternative splicing in the tyrosine phosphatase domain JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 4444-4448 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by M.L.Thomas, 11-APR-1990. FEATURES from to/span description pept 26 2515 leukocyte common antigen-related phosphatase precursor (EC 3.13.48) sigp 26 82 leukocyte common antigen-related phosphatase signal peptide matp 83 2512 leukocyte common antigen-related phosphatase mRNA < 1 3070 leukocyte common antigen-related phosphatase mRNA site 827 936 gg in short clone lambda-mLRP-B20 BASE COUNT 874 a 754 c 732 g 710 t ORIGIN 1 ccgcccagcg ccgggctcgg tcagcatgga ttcctggttc attcttgtcc tgtttggcag 61 tggtctaata catgttagtg ccaacaatgc tactacagtt tcaccttctt taggaacgac 121 aagattaatt aaaacatcaa caacagaatt ggctaaggaa gagaataaaa cctcaaattc 181 aacctcttca gtaatttctc tttctgtggc accaacattc agcccaaacc tgactctgga 241 gcccacctat gtgactactg ttaattcttc acactctgac aatgggacca ggagggcagc 301 cagcacggaa tctggaggca ctaccatttc cccgaacgga agctggctta ttgagaacca 361 gttcacggat gccataacag aaccctggga ggggaactcc agcactgcag caaccactcc 421 agaaaccttc cccccggcag atgagacacc aattattgcg gtgatggtgg ccctgtcctc 481 tctgctagta atcgtgttta ttatcatagt tctgtacatg ttaaggttta agaaatacaa 541 gcaagctggg agtcattcca actctttccg cctgtcaaat ggccgcacgg aggatgtgga 601 gccccaaagt gtaccacttc tggccaggtc cccaagcacc aacaggaagt acccaccact 661 gcctgtggac aagctggaag aggagattaa ccggagaatg gctgatgaca ataagatctt 721 cagagaagaa ttcaacgctc tccctgcttg tcctatccag gccacctgtg aggctgcctc 781 caaggaagaa aacaaggaaa aaaaccgcta tgtaaacatc ctgccctttc tctctttagc 841 tgtgagcaag gatgcagtga aagcactgaa caaaaccact ccattgttag aaagaaggtt 901 tattgggaaa tcaaactcca gaggctgtct ctcagatgac cactctagag tgcacctgac 961 acctgttgaa ggggtcccag attctgatta catcaacgct tcattcatta atggctacca 1021 ggaaaagaac aaattcatcg ctgcacaagg accaaaagaa gaaacagtga atgacttctg 1081 gagaatgata tgggaacaaa acacagctac tattgtcatg gtgaccaacc tgaaggagag 1141 aaaggagtgt aaatgtgccc aatactggcc agaccaaggc tgctggacct atgggaatgt 1201 ccgtgtgtct gtcgaggatg tgactgttct ggtggactac acagtacgga aattctgcat 1261 ccagcaggtg ggcgacgtga ccaacaggaa accacagcgc ctcatcactc agttccactt 1321 caccagctgg ccagactttg gggtgccttt caccccaatt ggcatgctca agttcctcaa 1381 gaaggtgaag gcctgtaacc ctcagtacgc aggggctatc gtggtccact gcagtgcagg 1441 tgtagggcgc actggcacct ttgttgtcat cgatgccatg ctggacatga tgcattcgga 1501 acgcaaagtg gatgtatacg ggtttgtgag ccggatccgg gcccagcgct gccagatggt 1561 acagacagac atgcagtacg tcttcatata ccaggccctt ctggagcatt atctgtatgg 1621 ggacacagaa ctggaagtga cttctctaga aacccaccta caaaaaattt ataacaagat 1681 cccagggacg agcaacaacg ggttagagga ggagtttaag aaattaactt caatcaaaat 1741 ccagaatgac aagatgcgca cgggaaacct tccagccaac atgaagaaga accgggtttt 1801 acagatcatt ccatatgaat ttaacagagt gatcattcca gtcaaacgag gcgaagagaa 1861 cacagactat gtgaacgcat ccttcattga tggataccgg cagaaagact cctacattgc 1921 cagccagggc cctcttctcc acacgattga ggacttctgg cgaatgatct gggagtggaa 1981 gtcctgttct atcgtaatgc tgacagaact ggaagagaga ggccaggaga agtgtgccca 2041 gtactggcca tctgatggcc tggtgtccta tggagacatc acagttgagc tgaagaagga 2101 ggaggaatgt gaaagctaca ctgtccgaga cctcctggtc accaacacca gggagaacaa 2161 gagtcggcaa atccggcagt tccacttcca cggctggcct gaggtgggca tccccagcga 2221 cggcaagggc atgatcaaca tcattgcagc agtgcagaag cagcagcagc agtcggggaa 2281 ccatcccatc actgtgcact gcagtgccgg ggcaggacgg acaggaacct tctgtgcctt 2341 gagcacagtc ctggaacgtg tgaaagcaga aggaatttta gatgtcttcc aaactgtcaa 2401 gagcctgcgg ctgcagaggc cacacatggt ccagacactg gaacagtatg aattctgcta 2461 caaggtggta caggagtaca ttgacgcctt ttcagattat gccaacttca agtgacaggt 2521 gacaaggccc acagacagga gaattgcctt taatattttg taatattctg tttttgttaa 2581 tatacccaaa attgtatata tcttataact gttttagaaa tggcacatag gcttctatta 2641 cctgttaggt ggagattttg tatgtaaatg tgttagcact gatagtcctt ttccagtgtt 2701 ttattgggaa attaaatagt gtgatatttg ggttgatata atgaaatcct cagcctggaa 2761 actgggccag attgttcctt gcttcaaata tcttttccta aagaagataa acctaagact 2821 cattccaggt agctcagtgc caactaaaac aaagcacaaa gttctcagag ctcttgagga 2881 aatggttgtc tccctgtccc caggcaggcc tcttcccctc cctgtcctgt aaatatccct 2941 cccctctcca gtccaccctc atctcccacc aagatcagcc acctcaggca tggggagtaa 3001 tgagaccaga gcgcctctct ggcaccacag cagggatcgt caggtaataa acactcttga 3061 ttccctgagg // LOCUS MUSLRPB 144 bp ds-DNA ROD 06-JUL-1990 DEFINITION Mouse leukocyte common antigen-related phosphatase gene, exon N. ACCESSION M36034 M33671 KEYWORDS leukocyte common antigen-related phosphatase; protein-tyrosine-phosphate phosphohydrolase; tyrosine phosphatase. SOURCE Mouse (strain (C57BL/6 X DBA/2)F1) pre-B cell line 70Z/3 DNA, clone lambda-mLRP-B20. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 144) AUTHORS Matthews,R.J., Cahir,E.D. and Thomas,M.L. TITLE Identification of an additional member of the protein-tyrosine-phosphatase family: Evidence for alternative splicing in the tyrosine phosphatase domain JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 4444-4448 (1990) STANDARD full staff_review FEATURES from to/span description pept / 25 / 132 leukocyte common antigen-related phosphatase, exon N (EC 3.13.48) (AA at 27) IVS < 1 24 leukocyte common antigen-related phosphatase intron X IVS 133 > 144 leukocyte common antigen-related phosphatase intron X+1 BASE COUNT 50 a 30 c 30 g 34 t ORIGIN 1 gcttactcaa acgatcatac aaagttctct ctttagctgt gagcaaggat gcagtgaaag 61 cactgaacaa aaccactcca ttgttagaaa gaaggtttat tgggaaatca aactccagag 121 gctgtctctc aggtcagaga aaac // LOCUS HUMACOLA1 34 bp ds-DNA PRI 06-JUL-1990 DEFINITION Human alpha-1 type IX collagen (COL9A1) gene, exon 1. ACCESSION M34534 KEYWORDS alpha-1 type IX collagen. SEGMENT 1 of 4 SOURCE Human DNA, clone YMh304. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 34) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept 19 / 32 alpha-1 type IX collagen precursor, exon 1 /hgml_locus_uid="LG0170H" /nomgen="COL9A1" /map="6q12-q14" pep$ 19 / 32 alpha-1 type IX collagen precursor, exon 1 sigp 19 / 32 alpha-1 type IX collagen signal peptide sig$ 19 / 32 alpha-1 type IX collagen signal peptide IVS 33 > 34 COL9A1 intron A BASE COUNT 14 a 5 c 9 g 6 t ORIGIN 1 agaaaatcaa ctgggaaaat gaagacctgc tggt // LOCUS HUMACOLA2 88 bp ds-DNA PRI 06-JUL-1990 DEFINITION Human alpha-1 type IX collagen (COL9A1) gene, exon 6. ACCESSION M32135 KEYWORDS alpha-1 type IX collagen. SEGMENT 2 of 4 SOURCE Human DNA, clone YMh617. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 88) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept / 3 / 86 alpha-1 type IX collagen, exon 6 (AA at 3) /hgml_locus_uid="LG0170H" /nomgen="COL9A1" /map="6q12-q14" pep$ / 3 + 86 alpha-1 type IX collagen, exon 6 (AA at 3) IVS < 1 2 COL9A1 intron E IVS 87 > 88 COL9A1 intron F BASE COUNT 23 a 24 c 22 g 19 t ORIGIN Unknown number of bp after segment 1. 1 agtttgaact tcaatggatg ctgatccatt gtgaccccct gcggcccagg acagaaactt 61 gccatgagct gccagccaga ataacggt // LOCUS HUMACOLA3 74 bp ds-DNA PRI 06-JUL-1990 DEFINITION Human alpha-1 type IX collagen (COL9A1) gene, exon 1*. ACCESSION M32133 KEYWORDS alpha-1 type IX collagen. SEGMENT 3 of 4 SOURCE Human DNA, clone Ymh617. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 74) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept < 1 + 72 alpha-1 type IX collagen, exon 1* (AA at 1) /hgml_locus_uid="LG0170H" /nomgen="COL9A1" /map="6q12-q14" IVS 73 > 74 COL9A1 intron G* BASE COUNT 5 a 21 c 32 g 16 t ORIGIN Unknown number of bp after segment 2. 1 atggcctgga ctgcgcggga ccgcggggcc ctggggctgc tgctgttggg gctctgcttg 61 tgcgcggctc aagt // LOCUS HUMACOLA4 25 bp ds-DNA PRI 06-JUL-1990 DEFINITION Human alpha-1 type IX collagen (COL9A1) gene, exon 7. ACCESSION M32137 KEYWORDS alpha-1 type IX collagen. SEGMENT 4 of 4 SOURCE Human DNA, clone YMh617. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 25) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept + 3 / 23 alpha-1 type IX collagen, exon 7 /hgml_locus_uid="LG0170H" /nomgen="COL9A1" /map="6q12-q14" pep$ + 3 / 23 alpha-1 type IX collagen (COL9A1), exon 7 IVS < 1 2 COL9A1 intron G* IVS 24 > 25 COL9A1 intron H* IVS < 1 2 COL9A1 intron F IVS 24 > 25 COL9A1 intron G BASE COUNT 7 a 10 c 7 g 1 t ORIGIN Unknown number of bp after segment 3. 1 agcccagcca gaccaccgac gaggt // LOCUS MUSACOLA1 34 bp ds-DNA ROD 06-JUL-1990 DEFINITION Mouse alpha-1 type IX collagen (COL9A1) gene, exon 1. ACCESSION M34533 KEYWORDS alpha-1 type IX collagen. SEGMENT 1 of 4 SOURCE Mouse DNA, clone YMm513. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 34) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept 19 / 32 alpha-1 type IX collagen (COL9A1) precursor, exon 1 pep$ 19 / 32 alpha-1 type IX collagen precursor, exon 1 sigp 19 / 32 alpha-1 type IX collagen signal peptide sig$ 19 / 32 alpha-1 type IX collagen signal peptide IVS 33 > 34 COL9A1 intron A BASE COUNT 13 a 6 c 9 g 6 t ORIGIN 1 agagaaccca ctgggaaaat gaagaacttc tggt // LOCUS MUSACOLA2 88 bp ds-DNA ROD 06-JUL-1990 DEFINITION Mouse alpha-1 type IX collagen (COL9A1), exon 6. ACCESSION M32134 KEYWORDS alpha-1 type IX collagen. SEGMENT 2 of 4 SOURCE Mouse DNA, clones YMm[413,911,341]. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 88) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept / 3 / 86 alpha-1 type IX collagen (COL9A1), exon 6 (AA at 3) pep$ / 3 + 86 alpha-1 type IX collagen, exon 6 (AA at 3) IVS < 1 2 COL9A1 intron E IVS 87 > 88 COL9A1 intron F BASE COUNT 25 a 22 c 21 g 20 t ORIGIN Unknown number of bp after segment 1. 1 agtttgaact ccagtggatg ctgattcatt gtgaccccct gagacccagg agagaaacct 61 gtcatgagct gccaatcaga atcacagt // LOCUS MUSACOLA3 80 bp ds-DNA ROD 06-JUL-1990 DEFINITION Mouse alpha-1 type IX collagen (COL9A1) gene, exon 1*. ACCESSION M32132 KEYWORDS alpha-1 type IX collagen. SEGMENT 3 of 4 SOURCE Mouse DNA, clones YMm[413,911,341]. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 80) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept < 1 + 78 alpha-1 type IX collagen (COL9A1), exon 1* (AA at 1) IVS 79 > 80 COL9A1 intron F* BASE COUNT 8 a 19 c 31 g 22 t ORIGIN Unknown number of bp after segment 2. 1 atggcctggg ctgcctgggg acgaggagtg cttgggctgt cactgatgct gtctgggctc 61 cgcttgtgtg ctgctcaagt // LOCUS MUSACOLA4 25 bp ds-DNA ROD 06-JUL-1990 DEFINITION Mouse alpha-1 type IX collagen (COL9A1) gene, exon 7. ACCESSION M32136 KEYWORDS alpha-1 type IX collagen. SEGMENT 4 of 4 SOURCE Mouse DNA, clones YMm[413,911,341]. ORGANISM Mus musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 25) AUTHORS Muragaki,Y., Nishimura,I., Henney,A., Ninomiya,Y. and Olsen,B.R. TITLE The alpha-1 (IX) collagen gene gives rise to two different transcripts in mouse embryonic and human fetal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 2400-2404 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.R.Olsen, 15-FEB-1990. FEATURES from to/span description pept + 3 / 23 alpha-1 type IX collagen (COL9A1), exon 7 pep$ + 3 / 23 alpha-1 type IX collagen, exon 7 IVS < 1 2 COL9A1 intron G* IVS 24 > 25 COL9A1 intron H* IVS < 1 2 COL9A1 intron F IVS 24 > 25 COL9A1 intron G BASE COUNT 8 a 7 c 7 g 3 t ORIGIN Unknown number of bp after segment 3. 1 agaccagcca gaccactgat gaggt //