Path: utzoo!attcan!uunet!shelby!bu.edu!mit-eddie!mintaka!olivea!samsung!uakari.primate.wisc.edu!dali.cs.montana.edu!milton!dadler
From: dadler@milton.u.washington.edu (David Adler)
Newsgroups: bionet.molbio.genbank
Subject: Re: finding chromosome markers
Message-ID: <9879@milton.u.washington.edu>
Date: 25 Oct 90 00:49:27 GMT
References: <1990Oct24.141236.17007@murdoch.acc.Virginia.EDU>
Organization: University of Washington, Seattle
Lines: 13

Bill Pearson writes:
>A colleague has asked me to identify all of the sequences in Genbank
>that map to mouse chromosome Y.  How would one do this?

You could access GBASE at the Jackson Labs to find out all genes mapped to
the Y chromosome and then cross check each one either using IRX software
at Genbank or Strings search with GCG package.  This manual search is 
feasible since there aren't many genes assigned to the mouse or human
Y chromosome as yet.  Not including the pseudoautosomal region I think
the gene count is about 12, Bkm, Hy, Spy, Tdy (now cloned as Sry), Zfy1 and Zfy2,
Mov-24, Xmmv-Y, Yaa, Yb10.  I think only Bkm, Zfys, and Sry have been 
sequenced. (BTW Sry very recent). There are several more on human Y.
This is my quick check and should be checked for completeness.