Path: utzoo!utgpu!watserv1!watmath!uunet!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Helicobacter felis 16S rRNA. Message-ID: Date: 1 Dec 90 13:00:05 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 135 Approved: lear@genbank.bio.net Checksum: 09745 9 LOCUS LEIHSP83 3577 bp ds-DNA INV 01-DEC-1990 DEFINITION Leishmania mexicana heat shock protein 83 gene, complete cds. ACCESSION M34292 KEYWORDS heat shock protein 83. SOURCE Leishmania mexicana amazonensis (isolate MHOM/BR/77/LTB0016) promastigote DNA. ORGANISM Leishmania mexicana Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 3577) AUTHORS Shapria,M. and Pedraza,G. TITLE Sequence analysis and transcriptional activation of heat shock protein 83 of Leishmania mexicana amazonensis JOURNAL Mol. Biochem. Parasitol. 42, 247-256 (1990) STANDARD simple staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly ] submitted by M.Shapira, 16-MAY-1990. FEATURES from to/span description pept 1 1299 heat shock protein 83, exon 1 2771 3577 heat shock protein 83, exon 2 intron 1300 2770 HSP83 intron (no splice consensus) BASE COUNT 726 a 1100 c 1122 g 629 t ORIGIN 1 atgacggaga cgttcgcgtt ccaggcggag atcaatcagt tgatgtcact gatcatcaac 61 accttctact cgaacaagga gatcttcctg cgcgacgtga tcagcaatgc gtcggatgcg 121 tgcgacaaga tccgctacca gagcctgacg gacccgtcgg tgctgggcga cgcgactcgc 181 ctgtgcgtcc gcgtggtgcc ggacaaggag aacaagacgc tgacggtgga ggataacggc 241 atcggtatga ccaaggcgga cctcgtgaac aacctgggca cgatcgcgcg ctccggcacg 301 aaggcgttca tggaggcgct ggaggccggc gcggacatga gcatgatcgg ccagttcggt 361 gtcgggttct actcggcgta ccttgtggcg gaccgcgtga cggtgacgtc gaagaacaac 421 tcggacgagg tgtacgtatg ggagtcgtcc gctggcggca cgttcacgat cacgagcgcg 481 ccggagtcgg acatgaagct gccggcacgg atcacgctgc acctcaagga ggaccagctg 541 gagtacctgg aggcgcgccg cctgaaggag ctgatcaaga agcactccga gttcatcggc 601 tacgacatcg agctgatggt ggagaagacg acggagaagg aggtgacgga cgaggacgag 661 gaggaggcga agaaggccga cgaggacggc gaggagccga aggtggagga ggtgacggag 721 ggcgaagagg gcaagaagaa gaagacgaag aaggtgaagg aggtgacgaa ggagtacgag 781 gtccagaaca agcacaagcc gctctggacg cgcgacccga aggacgtgac gaaggaggag 841 tacgccgcct tctacaaggc catctccaac gactgggagg acccgccggc gacgaagcac 901 ttctctgtgg agggccagct ggagttccgc gcgatcatgt tcgtgccgaa gcgcgcgccg 961 ttcgacatgt tggagccgaa caagaagcgc aacaacatca agctgtacgt gcgccgcgtg 1021 ttcatcatgg acaactgcga ggacctgtgc ccggactggc tcggcttcgt gaagggcgtt 1081 gtggacagcg aggacctgcc gctgaacatc tcgcgcgaga acctgcagca gaacaagatc 1141 ctgaaggtga tccgcaagaa catcgtgaag aagtgcctgg aaatgttcga ggaggtggcg 1201 gagaacaagg aggactacaa gcagttctac gagcagttcg gcaagaacat caagctgggc 1261 atccacgagg acacggcgaa ccgcaagaag ctgatggagt gccggtacgg cagcggcaca 1321 cgcacacagt gctcgtatct tctccggctt gcgtgcatgc tgccttcgca aagctgcgga 1381 cgcggcgctc tggagccttg ccccgcgcac tgctctttac atagcccgac gtgagggcac 1441 ttcgcgggca gtgctgcggc ctcgtgtggg atcgcgtcag gactgaagga gagcgaagcc 1501 cggggctcgg tgtggagaag gagcgttcgt ccaagtagcc ccgttgcgag agtgtgtgac 1561 ccatgccagt gcacctcact gccctcccgc ttccccggcc acttgggcac tcacatcccc 1621 ctccccttcc cttctccccc cgtactcccc cctctctctt tctcgcatcc tctgccctct 1681 caccggcgcg gcgcaccggc gctcttttcc gttttgattt tgcgtgtccc aacacacagt 1741 tggatcgttt ttcttctctc cctaacgagt cgcgacgagg tcgatgctgc ccgagctcac 1801 ccccacccct ctgcgcctgc gtcactgctt gtcagagccg tgtgctctcg cctcccactc 1861 tggagcgtcc tctccgcgcg tgcgactccc ttccgtctct ctcgcccgtg ggagcgtttg 1921 acgaggggag gccgtgcgcc gcctctctct gcatgcggcg tggcagatcg ggatggggat 1981 gggtgctgag gtggtggcgg cgtccgctcc cgcgatggct ttgattttgt attgctgctg 2041 tggccctggc acacgcacgc gcgcacgcac aggccacccg cacagcctca tccacatgcg 2101 gaggcgtttt ctctgtgttc ccttgtgcgc gtgcgtgtgc ctgcgtgtgt acgtgtgcat 2161 gggcgcacgg cggcgccgtc agcgaaggcg gaggcacaaa gagagggaaa acgacacgcg 2221 cctgcgcctc acggtttccg tgctgcacgc gagcgcaacg aagcgtgggc gcttgttctc 2281 cctccaatgc aaagcaatcc ccccgctcgg ttgcctacac gtcctgcacg agagggacga 2341 gcacgtctgc gcagcggctg tgctccatcc ccaccccctt ccccatgtga cgctctaact 2401 tccatctccg tcgccctccc cctctgtacc tcatcaacac acggacttta cagatcaccg 2461 acccgcccac cacgatagag ctcttcggtg cgcactttcc ttccctcgca ctctctcttc 2521 cctacacctc tccctcgatt gctttgggcc gcactgagta agttctctca ccagaggcac 2581 ccaactgtcg ttataaaaga agcatcacca ggagccgctg cacagaagga gtcactccga 2641 cacgcacacg cacgcgctcc tctcttcccc tgcctccctc gcacctgacc ctattgttaa 2701 cccccctccc tttctcccca accattatta ttacctgcac tccctccccc ctaccacccc 2761 ccgctgcagc ctgctgcgct tctacagcac cgagtctggc gaggtgatga cgacgctgaa 2821 ggactacgtg acgcgcatga aggcggagca gaattcgatc tactacatca ccggcgacag 2881 caagaagaag ctggagtcgt cgccgttcat tgagcaggcg aagcgccgcg ggtttgaggt 2941 gctgttcatg acggagccgt acgacgagta cgtgatgcag caggtgaagg acttcgagga 3001 caagaagttc gcgtgcctga cgaaggaggg cgtgcacttc gaggagtcgg aggaggagaa 3061 gcggcagcgc gaggaggaga aggcgacgtg cgagaagctg tgcaaaacga tgaaggaggt 3121 gctgggcgac aaggtggaga aggtgaccgt gtcggagcgc ctgtcgacgt cgccgtgcat 3181 cctggtgacg tcggagttcg ggtggtcggc gcacatggag cagatgatgc gcaaccaggc 3241 gctgcgcgac tccagcatgg cgcagtacat gatgtccaag aagacgatgg agctcaaccc 3301 caaacacccc atcatcaagg agctgcgccg ccgcgtggag gcggacgaga acgacaaggc 3361 cgtgaaggac ctcgtcttcc tgctgttcga cacgtcgctg ctcacgtccg gcttccagct 3421 ggaggacccc acgtacgccg agcgcatcaa ccgcatgatc aagctcggtc tgtcgctcga 3481 cgaggaggag gaggaggagg cagtcgaggc agcggtggcc gagacagccc ccgcggaggt 3541 cactgccggc acatccagca tggagctggt ggactga LOCUS HECRR16S 1444 bp ss-rRNA BCT 10-AUG-1990 DEFINITION Helicobacter felis 16S rRNA. ACCESSION M37643 KEYWORDS 16S rRNA. SOURCE Helicobacter felis (strain DS3) rRNA. ORGANISM Helicobacter felis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (sites) AUTHORS Paster,B.J., Lee,A., Fox,J.G., Dewhirst,F.E., Tordoff,L.A., Fraser, G.J., O'Rourke,J.L., Taylor,N.S. and Ferrero,R. TITLE The phylogeny of Helicobacter felis sp. nov., Helicobacter mustelae, and related bacteria. JOURNAL Unpublished (0) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [Unpublished (1990)] kindly submitted by B.J.Paster, 08-AUG-1990. Forsyth Dental Center 140 Fenway Boston, MA 02115 FEATURES from to/span description rRNA 1 1444 16S rRNA BASE COUNT 380 a 313 c 419 g 320 t 12 others ORIGIN 1 ctttatggag agtttgatcc tggctcagag tgaacgctgg cggcgtgcct aatacatgca 61 agtcgaacga tgaagcctag cttgctaggt ggattagtgg cgcacgggtg agtaacgcat 121 agataacatg ccctttagtt tgggatagcc actagaaatg gtgattaata ccaaatactc 181 ctacggggga aagatttatc gctaaaggat tggtctatgt cctatcagct tgttggtgag 241 gtaaaggctc acnnaggcta tgacgggtat ccggcctgag agggtgaacg gacacactgg 301 aactgagaca cggtccagac tcctacggga ggcagcagta gggaatattg ctcaatgggc 361 gcaagcctga agcagcaacg ccgcgtggag gatgaaggtt ttaggattgt aaactccttt 421 tgtcagagaa gataatgacg gtatctgacg aataagcacc ggctaactcc gtgccagcag 481 ccgcggtaat acggagggtg caagcgttac tcggaatcac tgggcgtaaa gagtgcgtag 541 gcggggttgt aagtcagatg tgaaatccta tggcttaacc atagaactgc atttgaaact 601 acaactctgg agtgtgggag aggtaggtgg aattcttggt gtaggggtaa aatccgtaga 661 gatcaagagg aatactcatt gcgaaggcga cctgctggaa caatactgac gctgatgcrc 721 gaaagcgtgg ggagcaaaca ggattagata ccctggtagt ccacgcccta aacgatggat 781 gctmgttgtt ggggggcttg tcctcccagt aatgcagcta acgccttaag catcccgcct 841 ggggagtacg gtcgcaagat taaaactcaa aggaatagac ggggacccgc acaagcggtg 901 gagcangtgg tttaattcga nnnnacacga agaaccttac ctaggcttga cattgaagga 961 atcccctaga aataggggag tgtctagctt gctagaccct gaaaacaggt gctgcacggc 1021 tgtcgtcagc tcgtgtcgtg agatgttggg ttaagtcccg caacgagcgc aaccctcttt 1081 cttagttgct aacaggttnt gctgagctct ctaagaatac tgcctgcgta agcaggagga 1141 aggtgaggac gacgtcaagt catcatggcc cttacgccta gggctacaca cgtgctacaa 1201 tggggtgtac aaagagatgc aatgccgcga ggctgagcca atcttaaaaa catctctcag 1261 ttcggattgc aggctgcaac tcgcctgcat gaagctggaa tcgctagtaa tcgcaaatca 1321 gccatgttgc ggtgaatacg ttcccgggtc ttgtactcac cgnncgtcac accatgggag 1381 ttgtgtttgc cttaagtcag gatgctaaag tagctactgc ccacggcaca cacagcgact 1441 gggg //