Path: utzoo!utgpu!watserv1!watmath!uunet!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Visna lentivirus, Icelandic strains LV1-1 and 1514, complete Message-ID: Date: 8 Dec 90 13:00:04 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 192 Approved: lear@genbank.bio.net Checksum: 12516 14 LOCUS VLVCG 9202 bp ss-RNA VRL 08-DEC-1990 DEFINITION Visna lentivirus, Icelandic strains LV1-1 and 1514, complete proviral genome. ACCESSION M10608 KEYWORDS complete genome; endonuclease; env gene; envelope glycoprotein; gag gene; integrase; nucleoprotein; pol gene; polyprotein; protease; protein Q; protein S; reverse transcriptase; trans-activator; transmembrane protein. SOURCE Visna lentivirus extrachromosomal proviral DNA. ORGANISM Visna virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 9202) AUTHORS Sonigo,P., Alizon,M., Staskus,K., Klatzmann,D., Cole,S., Danos,O., Retzel,E., Tiollais,P., Haase,A. and Wain-Hobson,S. TITLE Nucleotide sequence of the Visna lentivirus: Relationship to the AIDS virus JOURNAL Cell 42, 369-382 (1985) STANDARD full staff_review FEATURES from to/span description pept < 339 1817 gag protein (AA at 339) pept < 1691 5008 pol protein (AA at 1691) pept < 4956 5657 Q protein (AA at 4956) pept < 5935 > 8160 env protein (AA at 5935) pept < 8164 8907 env protein (AA at 8164) site 8161 8163 internal stop codon in env in [Cell 42, 369-382 (1985)] mRNA 1 9202 Visna genomic mRNA LTR < 1 160 5' LTR LTR 8852 > 9202 3' LTR rpt 1 97 R repeat 5' copy rpt 9106 9202 R repeat 3' copy binding 161 177 primer (Lys-tRNA) binding site signal 9178 9183 poly-A signal virion 1 9202 visna lentivirus virion BASE COUNT 3416 a 1419 c 2399 g 1968 t ORIGIN 5' end of virion; 27 bp upstream of SstI site. 1 gggaaaagca gagtgctttg gagagctcga aggaaagagt ctccgggcct ctcctgcctg 61 cctgaaaagc tcaataaagg agttggctga tatctgagct tgctggttat tatcgggatt 121 cgttactaat tccgtgcaac accggagcgg atctcgcagc tggcgcccaa cgtggggctc 181 gacaaagaat cagaagaaaa atgagagtta tgggaccacg gacgctgctc ctgtgaggac 241 ggcgaggaga gtaacggaca cggacaaaaa gtgaaagaaa gcttcgggga cgcctgaagt 301 aaggtaagag agacacctac tggggaagta gggaatagcc cttcagtgaa ggagaaagtg 361 ttgcttgggc acaggaggag ggttcgcgac cccttagaaa gacggagggg cgcgggcgtc 421 ctcctgggcc gaggggacac aagagcaaca ctggtaagga agccgccgtg gtgaggctag 481 ctagagacat ggcgaagcaa ggctcaaagg agaaaaaggg ataccccgag ctcaaggaag 541 taattaaagc aacttgtaaa ataagggtag ggcccgggaa ggagaccttg acagaaggga 601 attgtctatg ggcattaaaa actatagact ttatatttga ggatttaaaa acagagccgt 661 ggacgattac aaaaatgtat acagtatggg atagattaaa agggctaact ccggaggaaa 721 caagcaaaag agaattcgcc tccttgcaag ctacgttggc ttgcataatg tgtagtcaaa 781 tgggcatgaa gcccgagaca gtgcaggcag caaagggaat aataagtatg aaagaaggac 841 tacacgaaaa taaggaggcc aagggggaga aggtagagca actctacccc aacttagaga 901 aacataggga agtttatcct attgtgaatt tgcaagcagg agggagaagt tggaaggcgg 961 tagagtcagt agtcttccag caactgcaaa cagtggcaat gcagcatgga cttgtgtccg 1021 aggattttga gaggcaattg gcatattatg ctactacctg gactagtaaa gatatattag 1081 aagtattggc tatgatgcct gggaatagag cacagaagga attaatacaa ggaaaattaa 1141 atgaagaagc agaaaggtgg gtaagacaaa atccacccgg gccgaatgtc ctcacggtgg 1201 atcaaataat gggagtggga caaaccaatc agcaggcatc tcaagccaat atggatcagg 1261 caagacagat atgcctgcag tgggtaataa cagcgttaag atcagtgagg catatgtcac 1321 atagaccagg aaaccctatg ttagtgaagc agaagaatac tgagagttat gaagacttca 1381 tagctcgcct actagaggct attgatgcgg aaccagtgac ggaccctata aaaacatatt 1441 taaaagtaac attgtcatat acaaatgcta gcacagactg tcaaaagcag atggatagga 1501 cattggggac gagggttcaa caagcaacgg tagaagaaaa gatgcaagca tgtcgagatg 1561 tgggatccga aggatttaag atgcaattat tagcacaagc tttgagaccg caagggaagg 1621 caggacacaa aggggtaaat caaaagtgtt ataattgtgg aaaaccagga catctcgcaa 1681 gacagtgtag acaaggaata atatgccatc attgtggaaa aagaggacat atgcaaaagg 1741 actgccggca gaagaaacag cagggaaaca acaggagggg gccacgtgtg gtgccgtccg 1801 cgccccctat gttgtaacag aagcaccacc caaaatagaa ataaaagtag gaacaaggtg 1861 gaaaaaatta ttagtagata cgggggcaga taaaactata gtaacatccc atgatatgtc 1921 agggatacca aagggaagga taatattaca gggcataggg ggaataatag aaggagaaaa 1981 atgggaacaa gtacacttgc aatataaaga taaaatgatc aaaggtacca tagtggtgtt 2041 agctacgagt ccggtagaag tattaggaag agataatatg agagaattgg gaataggatt 2101 aattatggca aatttagaag aaaagaaaat tcccagtaca agagtaagat taaaagaggg 2161 atgtaaggga ccccacatag cgcaatggcc tttgacgcaa gaaaaattag agggattaaa 2221 agaaatagta gacagattag agaaggaagg gaaagtagga agagcgcccc cacactggac 2281 ttgtaatacc cctatatttt gtattaagaa gaaatcagga aaatggagga tgttaataga 2341 ttttagagaa ttaaataagc aaacagaaga tttagcagaa gcacagttag ggttacctca 2401 tccaggagga ttacagagaa agaaacatgt aacaatatta gatataggag atgcatattt 2461 tacaatacca ttatatgagc catatagaca atatacatgc tttaccatgt taagtccaaa 2521 taatttagga ccatgtgtaa gatattattg gaaagtgtta ccacaaggat ggaaattaag 2581 tcctgcagtg tatcaattta caatgcaaaa aatattaaga ggatggatag aagaacaccc 2641 tatgatacaa tttggaatat acatggatga tatctatata gggagtgatt taggactaga 2701 agagcacagg ggtatcgtga acgaactagc atcatatata gcgcaatatg gattcatgct 2761 gcctgaagat aagaggcaag aaggataccc ggcgaaatgg cttggatttg aattgcatcc 2821 ggagaaatgg aaatttcaaa aacatacgct cccagagatt acagaaggac ccataacctt 2881 gaataaacta cagaaattag taggagattt agtttggaga caatccctaa taggaaaaag 2941 catcccaaat atcttaaaat taatggaagg agatagggct ttacaaagtg aaagatacat 3001 agagagtata catgtaagag aatgggaagc ctgtagacaa aagctgaagg aaatggaagg 3061 aaattattat gatgaagaga aggatatcta tgggcaacta gattggggaa ataaagcaat 3121 agaatacata gtatttcaag aaaaaggaaa acctttatgg gtaaatgtag tacatagtat 3181 taagaatttg agtcaagccc aacaaattat caaagcagca caaaaactga cacaagaagt 3241 aataataaga acaggcaaga taccctggat tttgttgccg ggaagggaag aagattggat 3301 attagagtta caaatgggaa acataaattg gatgccatca ttttggtcat gttataaagg 3361 ctcggtgagg tggaaaaaga ggaatgtaat agcggaacta gtcccaggac caacatatta 3421 taccgatgga ggaaagaaaa atgggcgggg aagcctgggg tatattgcct ccacaggtga 3481 aaagtttaga atacatgaag aagggacaaa tcagcagtta gaattgaggg ccatagaaga 3541 ggcatgtaaa cagggaccag aaaaaatgaa tatagtaaca gatagcaggt atgcatatga 3601 atttatgttg cggaactggg acgaagaagt aataagaaac cctatacaag cgagaattat 3661 ggaattagtg cataataaag aaaaaatagg ggtacattgg gtgcctggac acaaggggat 3721 tcctcaaaat gaagaaatag ataggtatat ctcagaaata tttttagcaa aagagggaag 3781 agggatttta caaaaaaggg cagaagatgc tggatatgac ttaatatgtc cacaggagat 3841 aagcattccg gcgggacaag tgaaaaggat agcaattgac ttgaaaataa atttgaaaaa 3901 ggaccagtgg gccatgatag ggaccaaaag cagttttgca aataagggag tattcgtaca 3961 aggaggtatc atagattcgg gatatcaagg aacaatacaa gtagtaatat ataatagtaa 4021 taataaagaa gtagtaatac cacagggaag aaaatttgca cagttgatcc tcatgcctct 4081 aatacatgaa gagttggagc catggggaga aacaagaaaa acagaaagag gggaacaagg 4141 atttggatca acagggatgt attggataga aaatattccc ctagcagaag aagagcataa 4201 caaatggcat caagatgctg tgtccttgca tttagaattt gggattccca ggacagctgc 4261 agaagatata gttcaacaat gtgatgtgtg tcaagaaaat aaaatgccta gtacattaag 4321 aggcagtaat aaaaggggca tagaccattg gcaagtagac tatacccact atgaagacaa 4381 gataatattg gtctgggtag aaacaaattc aggactaatc tatgcagaga gggtaaaagg 4441 agaaacagga caagaattta gggtgcaaac tatgaaatgg tatgcgatgt ttgccccgaa 4501 atcattgcag tctgataacg gaccagcatt tgtagcagaa tctactcagc tcttaatgaa 4561 atatttgggc atagaacata ctacagggat cccctggaac ccacaatctc aagcattagt 4621 agagagaaca catcagacgt taaagaatac attagaaaaa cttataccta tgtttaatgc 4681 gtttgaatca gccctcgcag ggaccctcat tactctaaat ataaaaagaa agggtgggct 4741 agggacaagc cctatggata tatttatatt taataaggaa caacaaagaa tacagcaaca 4801 aagtaaatca aaacaagaaa aaattcgatt ttgttattac agaacaagaa aaagagggca 4861 tccaggagag tggcaaggac caacacaggt actttggggc ggggacggtg cgattgtagt 4921 gaaagacaga ggcacagata gatatctggt gatagctaac aaagatgtta agttcatacc 4981 gccaccaaaa gaaatacaaa aagaataaag caagggagat aggaccccag ttgccactat 5041 gggcatggaa agaaacagca tttagtataa atcaagaacc ctattggtat agtaccataa 5101 ggctacaagg gttgatgtgg aataaaagag ggcataaact tatgtttgta aaagaaaacc 5161 aagggtatga gtattgggaa acatcaggaa aacagtggaa aatggagata agacgagatc 5221 tggatctgat agcccaaata aattttagaa atgcatggca atataaaagc cagggagaat 5281 ggaaaacaat aggggtctgg tatgaatcac caggggatta caagggaaaa gagaatcagt 5341 tttggttcca ttggagaata gctctctgca gctgtaacaa aacaaggtgg gatatacggg 5401 aattcatgat agggaagcat aggtgggatt tatgtaaatc gtgtatacaa ggggagatag 5461 ttaagaatac aaatccaaga agcttacaac gcttagcttt attgcaccta gcaaaagacc 5521 atgtatttca agtaatgcca ttgtggagag ccaggagagt cacagtgcag aagtttccat 5581 ggtgtcgtag cccaatgggt tacacgatac cttggtctct gcaggaatgc tgggaaatgg 5641 aatccatctt tgaataatgg aagaagtacc aagaagacag ccaggaggct tagtagaagt 5701 agagggagta tttcaatttt atgaagactg ggaatgttgg gactatgtaa gtcaaagagt 5761 atctgacgaa agactacaac gatggctagc tatgcttact aataatcagc ttagaagaca 5821 agtaattagg gaagcacaga tctggatgtg gaaacataag ggagctgcag ttagaagaaa 5881 ttgtggttgc aggctatgta accccggctg gggaagccaa gtaagaaatg ttgaactgtg 5941 ataagcctgt ctaggatggc cagcaaagaa agtaagccaa gcagaacaac gtggagagac 6001 atggagcccc cactccgaga aacatggaat caagtattac aggagctagt aaaaagacaa 6061 caacaggagg aagaagaaca gcagggactg gtatcaggta agaaaaaatc atgggtaagt 6121 attgacctcc tggggacaga aggaaaagat attaagaagg taaatatatg ggaaccatgt 6181 gaaaagtggt ttgcacaggt ggtatggggg gtattgtggg tgctgcaaat tgtgttgtgg 6241 ggatgtctca tgtgggaagt gagaaaagga aaccagtgtc aagcagaaga agtgatagca 6301 ttggtgagtg atcctggagg atttcagagg gtgcagcacg tagaaacagt gcctgtgacc 6361 tgtgtgacaa aaaatttcac tcaatgggga tgtcaacccg agggggccta tccagatcct 6421 gaactggagt atagaaatat atctagggaa atcttagagg aagtatataa acaagactgg 6481 ccctggaata cttatcattg gcctttatgg caaatggaaa atatgaggca atggatgaaa 6541 gaaaatgaaa aggagtataa ggaaagaaca aacaaaacga aggaagatat agatgatctg 6601 gtagcaggaa gaataagggg aagattttgt gtgccatatc cctatgcttt actacgatgt 6661 gaggagtggt gttggtaccc tgaatctatt aatcaagaaa caggacatgc tgaaaaaata 6721 aaaataaact gcacaaaagc aaaagcagtt tcttgtacag aaaaaatgcc cttagcagca 6781 gtccagcggg tatattggga aaaagaggat gaagaaagca tgaagttttt gaatataaaa 6841 gcctgtaata tatcattgag gtgtcaagat gaaggaaaga gtccgggagg atgtgtacaa 6901 ggatacccca ttccaaaggg agcagaaata ataccagaag ctatgaaata cctcagggga 6961 aagaaaagtc gatatggagg gatcaaggat aaaaatgggg aattaaaatt acctctctct 7021 gtaagggtat gggtgaggat ggcgaatttg tcaggatggg tgaatggaac gcctccttac 7081 tggagtgcaa ggattaatgg gagtacaggg ataaatggaa caaggtggta tggagtagga 7141 acactacatc acttagggta taacattagc agtaacccag agggagggat atgtaacttt 7201 acaggagaac tttggatagg gggtgacaga ttcccatatt attataagcc ctcatggaat 7261 tgttcacaaa attggacagg tcacccagta tggcacgtat ttagatactt ggatatgaca 7321 gaacatatga caagcagatg tatacaaaga cctaaaagac ataatataac agtaggaaat 7381 ggaacaataa cggggaattg tagtgtaaca aattgggatg gatgtaactg tacaaggtca 7441 ggaaatcatt tgtataatag cacaagcgga ggactgttag taatcatatg caggcaaaat 7501 agcaccataa caggaataat gggaacgaac actaattgga caacaatgtg gaacatctac 7561 caaaattgct caagatgtaa caacagtagc ctagacagaa caggtagtgg gaccttggga 7621 acagtgaaca accttaaatg tagcttacca cacagaaatg agagtaacaa gtggacatgt 7681 aagagccaaa gagactcata tatagctgga agagacttct ggggaaaagt aaaagcaaaa 7741 tacagttgtg agagtaattt agggggtcta gatagtatga tgcatcagca aatgttactg 7801 caacgatacc aagtaataag agtaagagct tacacatatg gtgttgtaga aatgccacaa 7861 tcgtatatgg aggagcgagg ggaaaacagg aggtcaagaa ggaacctcca aaggaagaaa 7921 agagggatag gcttggttat tgtgctagcc atcatggcaa taatcgctgc tgcaggagct 7981 ggtctcggtg tcgcaaacgc cgtgcagcaa tcctatacca ggacggctgt ccagtctctt 8041 gctaacgcaa ctgctgccca gcaggaagtg ttggaagcat cgtatgccat ggtacagcat 8101 atagccaaag gaataagaat cctagaggca agagtggcta gggtggaagc cctggtagat 8161 tgaatgatgg tataccaaga attggattgc tggcattatc aacactactg tgtaacctca 8221 acaagaagtg aagtagccaa ttatgtaaac tggacaagat ttaaagataa ctgtacctgg 8281 caacagtggg aggaagaaat agaacaacac gagggaaact tgagtctatt actcagagaa 8341 gcagcattac aagtacacat agctcaaaga gatgctagga gaatcccaga tgcttggaaa 8401 gcaatacaag aagcatttaa ctggtcctct tggttctcgt ggctcaaata tataccctgg 8461 attatcatgg gaattgtagg attaatgtgt tttagaatac taatgtgtgt gatatcaatg 8521 tgtttgcagg cttacaagca agtaaagcag atcagatata cacaggtaac agtggtgata 8581 gaagcaccgg tggaattgga ggaaaaacaa aaaagaaacg gggatggtac aaatggctgc 8641 gcaagcttag agcacgagag aagaacatcc catcgcagtt ttatccagat atggagagca 8701 acatggtggg catggaaaac ctcaccttgg agacacaact ggaggacaat gccctatata 8761 accctgctac ccatattggt gatatggcaa tggatggaag agaatggatg gaatggagag 8821 aatcagcaca aaaagaaaaa agaaagggtg gactgtcagg acagagaaca aatgcctacc 8881 ctggaaaatg actatgtaga gttataggaa ggtcatgtca ctgttaccag aaatcatagt 8941 caggatgaca cagcaaatgt aaccagttac cagaaatcat agtcaggatg acacagcaaa 9001 tgtaaccgca agttctgctt ttttgcgcta agtcatgtag cagctgatgc ttgagtcata 9061 accgcagatg taaacaagtt gcctatataa gccgcttgct agctggggaa aagcagagtg 9121 ctttggagag ctcgaaggaa agagtctccg ggcctctcct gcctgcctga aaagctcaat 9181 aaaggagttg gctgatatct ga //