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From: MICPRF@lure.latrobe.edu.au
Newsgroups: bionet.software
Subject: Problems with sequence alignment program
Message-ID: <4981@lure.latrobe.edu.au>
Date: 23 Jan 91 12:13:15 GMT
Organization: VAX Cluster, Computer Centre, La Trobe University
Lines: 13

Hello molbio.software.netters,
	I recently ported to my unix box and to a VAX the sequence
alignment program called align, found in align.ARC in Don Gilbert's
great IuBio archive. Unfortunately, on both machines when I run the
program the alignment output for 2 protein sequences contained in 2
input files always consists of both sequences listed one after the other
- as though each is part of an alignment to a sequence whose length is
the sum of the 2 input sequence lengths.
ie ---------SEQUENCE2
   SEQUENCE1---------
Did anyone else who might have installed this programme have the same
trouble, or have I made some silly error?	Thanks,
					Paul Fisher(micprf@lure.latrobe.edu.au)