Path: utzoo!utgpu!watserv1!watmath!uunet!spool2.mu.edu!sol.ctr.columbia.edu!bronze!cricket.bio.indiana.edu!gilbertd
From: gilbertd@cricket.bio.indiana.edu (Don Gilbert)
Newsgroups: bionet.software
Subject: Re: Problems with sequence alignment program
Message-ID: <1991Jan23.154232.20653@bronze.ucs.indiana.edu>
Date: 23 Jan 91 15:42:32 GMT
References: <4981@lure.latrobe.edu.au>
Sender: news@bronze.ucs.indiana.edu (USENET News System)
Organization: Biology, Indiana University - Bloomington
Lines: 16

In article <4981@lure.latrobe.edu.au> MICPRF@lure.latrobe.edu.au writes:
>	I recently ported to my unix box and to a VAX the sequence
>alignment program called align, found in align.ARC in Don Gilbert's
>great IuBio archive. Unfortunately, on both machines when I run the
>program the alignment output for 2 protein sequences contained in 2
>input files always consists of both sequences listed one after the other

I don't use this align program myself, but have gotten it to work, at 
least on simple dna sequences.  I had to fiddle with it a bit.  You might
want to try my revision, which runs on Iubio VMS Vax.  See align1.arc
in directory [archive.molbio.align] on Iubio.bio.indiana.edu.
-- Don

-- 
Don Gilbert    gilbertd@cricket.bio.indiana.edu
biocomputing office, biology dept., indiana univ., bloomington, in 47405