Path: utzoo!utgpu!watserv1!watmath!uunet!wuarchive!decwrl!llustig!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Hepatitis C virus (HCV-J) complete genome. Message-ID: Date: 30 Jan 91 13:02:41 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 189 Approved: lear@genbank.bio.net Checksum: 45760 13 LOCUS HPCJCG 9413 bp ss-RNA VRL 30-JAN-1991 DEFINITION Hepatitis C virus (HCV-J) complete genome. ACCESSION D90208 KEYWORDS complete genome; polyprotein. SOURCE Hepatitis C virus (strain J) isolated from human plasma, cDNA to viral RNA. ORGANISM Hepatitis C virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Togaviridae incertae sedis. REFERENCE 1 (bases 1 to 9413) AUTHORS Kato,N., Hijikata,M., Ootsuyama,Y., Nakagawa,M., Ohkoshi,S., Sugimura,T. and Shimotohno,K. TITLE Molecular cloning of the human hepatitis C virus genome from Japanese patients with non-A, non-B hepatitis JOURNAL Proc. Natl. Acad. Sci. U.S.A 87, 9524-9528 (1990) STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Nobuyuki Kato National Cancer Center Research Institute 5-1-1 Tsukiji, Chuo-ku Tokyo 104 Japan Phone: 03-542-2511 x4701 Fax: 03-545-3567 FEATURES Location/Qualifiers CDS 330..9362 /note="viral polyprotein" BASE COUNT 1886 a 2816 c 2694 g 2017 t ORIGIN 1 ttgggggcga cactccacca tagatcactc ccctgtgagg aactactgtc ttcacgcaga 61 aagcgtctag ccatggcgtt agtatgagtg ttgtgcagcc tccaggaccc cccctcccgg 121 gagagccata gtggtctgcg gaaccggtga gtacaccgga attgccagga cgaccgggtc 181 ctttcttgga tcaacccgct caatgcctgg agatttgggc gtgcccccgc gagactgcta 241 gccgagtagt gttgggtcgc gaaaggcctt gtggtactgc ctgatagggt gcttgcgagt 301 gccccgggag gtctcgtaga ccgtgcatca tgagcacaaa tcctaaacct caaagaaaaa 361 ccaaacgtaa caccaaccgc cgcccacagg acgttaagtt cccgggcggt ggtcagatcg 421 ttggtggagt ttacctgttg ccgcgcaggg gccccaggtt gggtgtgcgc gcgactagga 481 agacttccga gcggtcgcaa cctcgtggaa ggcgacaacc tatccccaag gctcgccggc 541 ccgagggtag gacctgggct cagcccgggt acccttggcc cctctatggc aacgagggta 601 tggggtgggc aggatggctc ctgtcacccc gtggctctcg gcctagttgg ggccccacag 661 acccccggcg taggtcgcgt aatttgggta aggtcatcga tacccttaca tgcggcttcg 721 ccgacctcat ggggtacatt ccgcttgtcg gcgcccccct agggggcgct gccagggccc 781 tggcacatgg tgtccgggtt ctggaggacg gcgtgaacta tgcaacaggg aatctgcccg 841 gttgctcttt ctctatcttc ctcttagctt tgctgtcttg tttgaccatc ccagcttccg 901 cttacgaggt gcgcaacgtg tccgggatat accatgtcac gaacgactgc tccaactcaa 961 gtattgtgta tgaggcagcg gacatgatca tgcacacccc cgggtgcgtg ccctgcgtcc 1021 gggagagtaa tttctcccgt tgctgggtag cgctcactcc cacgctcgcg gccaggaaca 1081 gcagcatccc caccacgaca atacgacgcc acgtcgattt gctcgttggg gcggctgctc 1141 tctgttccgc tatgtacgtt ggggatctct gcggatccgt ttttctcgtc tcccagctgt 1201 tcaccttctc acctcgccgg tatgagacgg tacaagattg caattgctca atctatcccg 1261 gccacgtatc aggtcaccgc atggcttggg atatgatgat gaactggtca cctacaacgg 1321 ccctagtggt atcgcagcta ctccggatcc cacaagccgt cgtggacatg gtggcggggg 1381 cccactgggg tgtcctagcg ggccttgcct actattccat ggtggggaac tgggctaagg 1441 tcttgattgt gatgctactc tttgctggcg ttgacgggca cacccacgtg acagggggaa 1501 gggtagcctc cagcacccag agcctcgtgt cctggctctc acaaggccca tctcagaaaa 1561 tccaactcgt gaacaccaac ggcagctggc acatcaacag gaccgctctg aattgcaatg 1621 actccctcca aactgggttc attgctgcgc tgttctacgc acacaggttc aacgcgtccg 1681 ggtgcccaga gcgcatggct agctgccgcc ccatcgatga gttcgctcag gggtggggtc 1741 ccatcactca tgatatgcct gagagctcgg accagaggcc atattgctgg cactacgcgc 1801 ctcgaccgtg cgggatcgtg cctgcgtcgc aggtgtgtgg tccagtgtat tgcttcactc 1861 cgagccctgt tgtagtgggg acgaccgatc gtttcggcgc tcctacgtat agctgggggg 1921 agaatgagac agacgtgctg ctacttagca acacgcggcc gcctcaaggc aactggtttg 1981 ggtgcacgtg gatgaacagc actgggttca ccaagacgtg cgggggccct ccgtgcaaca 2041 tcgggggggt cggcaacaac accttggtct gccccacgga ttgcttccgg aagcaccccg 2101 aggccactta cacaaagtgt ggctcggggc cctggttgac acccaggtgc atggttgact 2161 acccatacag gctctggcac tacccctgca ctgttaactt taccgtcttt aaggtcagga 2221 tgtatgtggg gggcgtggag cacaggctca atgctgcatg caattggact cgaggagagc 2281 gctgtgactt ggaggacagg gataggtcag aactcagccc gctgctgctg tctacaacag 2341 agtggcagat actgccctgt tccttcacca ccctaccggc cctgtccact ggcttgatcc 2401 atcttcaccg gaacatcgtg gacgtgcaat acctgtacgg tatagggtcg gcagttgtct 2461 cctttgcaat caaatgggag tatatcctgt tgcttttcct tcttctggcg gacgcgcgcg 2521 tctgtgcctg cttgtggatg atgctgctga tagcccaggc tgaggccacc ttagagaacc 2581 tggtggtcct caatgcggcg tctgtggccg gagcgcatgg ccttctctcc ttcctcgtgt 2641 tcttctgcgc cgcctggtac atcaaaggca ggctggtccc tggggcggca tatgctctct 2701 atggcgtatg gccgttgctc ctgctcttgc tggccttacc accacgagct tatgccatgg 2761 accgagagat ggctgcatcg tgcggaggcg cggtttttgt aggtctggta ctcttgacct 2821 tgtcaccata ctataaggtg ttcctcgcta ggctcatatg gtggttacaa tattttatca 2881 ccagagccga ggcgcacttg caagtgtggg tcccccctct caatgttcgg ggaggccgcg 2941 atgccatcat cctccttaca tgcgcggtcc atccagagct aatctttgac atcaccaaac 3001 tcctgctcgc catactcggt ccgctcatgg tgctccaggc tggcataact agagtgccgt 3061 actttgtacg cgctcagggg ctcatccgtg catgcatgtt agtgcggaag gtcgctggag 3121 gccactatgt ccaaatggcc ttcatgaagc tggccgcgct gacaggtacg tacgtatatg 3181 accatcttac tccactgcgg gattgggccc acgcgggcct acgagacctt gcggtggcag 3241 tagagcccgt cgtcttctct gacatggaga ctaaactcat cacctggggg gcagacaccg 3301 cggcgtgtgg ggacatcatc tcgggtctac cagtctccgc ccgaaggggg aaggagatac 3361 ttctaggacc ggccgatagt tttggagagc aggggtggcg gctccttgcg cctatcacgg 3421 cctattccca acaaacgcgg ggcctgcttg gctgtatcat cactagcctc acaggtcggg 3481 acaagaacca ggtcgatggg gaggttcagg tgctctccac cgcaacgcaa tctttcctgg 3541 cgacctgcgt caatggcgtg tgttggaccg tctaccatgg tgccggctcg aagaccctgg 3601 ccggcccgaa gggtccaatc acccaaatgt acaccaatgt agaccaggac ctcgtcggct 3661 ggccggcgcc ccccggggcg cgctccatga caccgtgcac ctgcggcagc tcggaccttt 3721 acttggtcac gaggcatgct gatgtcgttc cggtgcgccg gcggggcgac agcaggggga 3781 gcctgctttc ccccaggccc atctcctacc tgaagggctc ctcgggtgga ccactgcttt 3841 gcccttcggg gcacgttgta ggcatcttcc gggctgctgt gtgcacccgg ggggttgcga 3901 aggcggtgga cttcataccc gttgagtcta tggaaactac catgcggtct ccggtcttca 3961 cagacaactc atcccctccg gccgtaccgc aaacattcca agtggcacat ttacacgctc 4021 ccactggcag cggcaagagc accaaagtgc cggctgcata tgcagcccaa gggtacaagg 4081 tgctcgtcct aaacccgtcc gttgccgcca cattgggctt tggagcgtat atgtccaagg 4141 cacatggcat cgagcctaac atcagaactg gggtaaggac catcaccacg ggcggcccca 4201 tcacgtactc cacctattgc aagttccttg ccgacggtgg atgctccggg ggcgcctatg 4261 acatcataat atgtgatgaa tgccactcaa ctgactcgac taccatcttg ggcatcggca 4321 cagtcctgga tcaggcagag acggctggag cgcggctcgt cgtgctcgcc accgccacgc 4381 ctccgggatc gatcaccgtg ccacacccca acatcgagga agtggccctg tccaacactg 4441 gagagattcc cttctatggc aaagccatcc ccattgaggc catcaagggg ggaaggcatc 4501 tcatcttctg ccattccaag aagaagtgtg acgagctcgc cgcaaagctg acaggcctcg 4561 gactcaatgc tgtagcgtat taccggggtc tcgatgtgtc cgtcataccg actagcggag 4621 acgtcgttgt cgtggcaaca gacgctctaa tgacgggttt taccggcgac tttgactcag 4681 tgatcgactg caacacatgt gtcacccaga cagtcgattt cagcttggat cccaccttca 4741 ccattgagac gacaacgctg ccccaagacg cggtgtcgcg tgcgcagcgg cgaggtagga 4801 ctggcagggg caggagtggc atctacaggt ttgtgactcc aggagaacgg ccctcaggca 4861 tgttcgactc ctcggtcctg tgtgagtgct atgacgcagg ctgcgcttgg tatgagctca 4921 cgcccgctga gacctcggtt aggttgcggg cttacctaaa tacaccaggg ttgcccgtct 4981 gccaggacca cctagagttc tgggagagcg tcttcacagg cctcacccac atagatgccc 5041 acttcttgtc ccagaccaaa caggcaggag acaacctccc ctacctggta gcataccaag 5101 ccacagtgtg cgccagggct caggctccac ctccatcgtg ggaccaaatg tggaagtgtc 5161 tcatacggct aaagcccaca ctgcatgggc caacgcccct gctgtacagg ctaggagccg 5221 ttcaaaatga ggtcactctc acacacccca taaccaaata catcatggca tgcatgtcgg 5281 ctgacctgga ggtcgtcact agcacctggg tgctagtagg cggagtcctt gcggctctgg 5341 ccgcgtactg cctgacgaca ggcagcgtgg tcattgtggg caggatcatc ttgtccggga 5401 ggccagctgt tattcccgac agggaagtcc tctaccagga gttcgatgag atggaagagt 5461 gtgcttcaca cctcccttac atcgagcaag gaatgcagct cgccgagcaa ttcaaacaga 5521 aggcgctcgg attgctgcaa acagccacca agcaagcgga ggctgctgct cccgtggtgg 5581 agtccaagtg gcgagccctt gaggtcttct gggcgaaaca catgtggaac ttcatcagcg 5641 ggatacagta cttggcaggc ctatccactc tgcctggaaa ccccgcgata gcatcattga 5701 tggcttttac agcctctatc accagcccgc tcaccaccca aaataccctc ctgtttaaca 5761 tcttgggggg atgggtggct gcccaactcg ctccccccag cgctgcttcg gctttcgtgg 5821 gcgccggcat tgccggtgcg gccgttggca gcataggtct cgggaaggta cttgtggaca 5881 ttctggcggg ctatggggcg ggggtggctg gcgcactcgt ggcctttaag gtcatgagcg 5941 gcgagatgcc ctccactgag gatctggtta atttactccc tgccatcctt tctcctggcg 6001 ccctggttgt cggggtcgtg tgcgcagcaa tactgcgtcg gcacgtgggc ccgggagagg 6061 gggctgtgca gtggatgaac cggctgatag cgttcgcttc gcggggtaac cacgtctccc 6121 ccacgcacta tgtgcccgag agcgacgccg cggcgcgtgt tactcagatc ctctccagcc 6181 ttaccatcac tcagttgctg aagaggcttc atcagtggat taatgaggac tgctccacgc 6241 cttgttccgg ctcgtggcta aaggatgttt gggactggat atgcacggtg ttgagtgact 6301 tcaagacttg gctccagtcc aagctcctgc cgcggttacc gggactccct ttcctgtcat 6361 gccaacgcgg gtacaaggga gtctggcggg gggatggcat catgcaaacc acctgcccat 6421 gtggagcaca gatcaccgga catgtcaaaa atggctccat gaggattgtt gggccaaaaa 6481 cctgcagcaa cacgtggcat ggaacattcc ccatcaacgc atacaccacg ggcccctgca 6541 cgccctcccc agcgccgaac tattccaggg cgctgtggcg ggtggctgct gaggagtacg 6601 tggaggttac gcgggtgggg gatttccact acgtgacggg catgaccact gacaacgtga 6661 aatgcccatg ccaggttcca gcccctgaat ttttcacgga ggtggatgga gtacggttgc 6721 acaggtatgc tccagtgtgc aaacctctcc tacgagagga ggtcgtattc caggtcgggc 6781 tcaaccagta cctggtcggg tcacagctcc catgtgagcc cgaaccggat gtggcagtgc 6841 tcacttccat gctcaccgac ccctctcata ttacagcaga gacggccaag cgtaggctgg 6901 ccagggggtc tcccccctcc ttggccagct cttcagctag ccagttgtct gcgccttctt 6961 tgaaggcgac atgtactacc catcatgact ccccggacgc tgacctcatc gaggccaacc 7021 tcctgtggcg gcaggagatg ggcgggaaca tcacccgtgt ggagtcagaa aataaggtgg 7081 taatcctgga ctctttcgat ccgattcggg cggtggagga tgagagggaa atatccgtcc 7141 cggcggagat cctgcgaaaa cccaggaagt tccccccagc gttgcccata tgggcacgcc 7201 cggattacaa ccctccactg ctagagtcct ggaaggaccc ggactacgtc cccccggtgg 7261 tacacgggtg ccctttgcca tctaccaagg cccccccaat accacctcca cggaggaaga 7321 ggacggttgt cctgacagag tccaccgtgt cttctgcctt ggcggagctc gctactaaga 7381 cctttggcag ctccgggtcg tcggccgttg acagcggcac ggcgactggc cctcccgatc 7441 aggcctccga cgacggcgac aaaggatccg acgttgagtc gtactcctcc atgccccccc 7501 tcgagggaga gccaggggac cccgacctca gcgacgggtc ttggtctacc gtgagcgggg 7561 aagctggtga ggacgtcgtc tgctgctcaa tgtcctatac atggacaggt gccttgatca 7621 cgccatgcgc tgcggaggag agcaagttgc ccatcaatcc gttgagcaac tctttgctgc 7681 gtcaccacag tatggtctac tccacaacat ctcgcagcgc aagtctgcgg cagaagaagg 7741 tcacctttga cagactgcaa gtcctggacg accactaccg ggacgtgctc aaggagatga 7801 aggcgaaggc gtccacagtt aaggctaggc ttctatctat agaggaggcc tgcaaactga 7861 cgcccccaca ttcggccaaa tccaaatttg gctacggggc gaaggacgtc cggagcctat 7921 ccagcagggc cgtcaaccac atccgctccg tgtgggagga cttgctggaa gacactgaaa 7981 caccaattga taccaccatc atggcaaaaa atgaggtttt ctgcgtccaa ccagagaaag 8041 gaggccgcaa gccagctcgc cttatcgtat tcccagacct gggggtacgt gtatgcgaga 8101 agatggccct ttacgacgtg gtctccaccc ttcctcaggc cgtgatgggc ccctcatacg 8161 gattccagta ctctcctggg cagcgggtcg agttcctggt gaatacctgg aaatcaaaga 8221 aatgccctat gggcttctca tatgacaccc gctgctttga ctcaacggtc actgagaatg 8281 acatccgtac tgaggaatca atttaccaat gttgtgactt ggcccccgaa gccaggcagg 8341 ccataaggtc gctcacagag cggctttatg tcgggggtcc cctgactaat tcgaaggggc 8401 agaactgcgg ttatcgccgg tgccgcgcaa gtggcgtgct gacgactagc tgcggcaaca 8461 ccctcacatg ttacttgaag gccactgcgg cctgtcgagc tgcaaagctc caggactgca 8521 cgatgctcgt gaacggagac gaccttgtcg ttatctgtga gagtgcggga acccaggagg 8581 atgcggcggc cctacgagcc ttcacggagg ctatgactag gtattccgcc ccccccgggg 8641 acccgcccca accagaatac gacttggagc tgataacgtc atgctcctcc aatgtgtcgg 8701 tcgcgcacga tgcatccggc aaaagggtgt actacctcac ccgtgacccc accacccccc 8761 tcgcacgggc tgcgtgggag acagttagac acactccagt caactcctgg ctaggcaata 8821 tcatcatgta tgcgcccacc ctatgggcga ggatgattct gatgactcat ttcttctcta 8881 tccttctagc tcaggagcaa cttgaaaaag ccctggattg tcagatctac ggggcctgtt 8941 actccattga gccacttgac ctacctcaga tcattgaacg actccatggt cttagcgcat 9001 tttcactcca cagttactct ccaggtgaga tcaatagggt ggcttcatgc ctcaggaaac 9061 ttggggtacc gcctttgcga gtctggagac atcgggccag aagtgtccgc gctaagctac 9121 tgtcccaggg ggggagggct gccacttgcg gcaagtacct cttcaactgg gcagtaaaga 9181 ccaagcttaa actcactcca atcccggctg cgtcccagct agacttgtcc ggctggttcg 9241 ttgctggtta caacggggga gacatatatc acagcctgtc tcgtgcccga ccccgttggt 9301 tcatgttgtg cctactccta ctttctgtag gggtaggcat ctacctgctc cccaaccggt 9361 gaacggggag ctaaccactc caggccaata ggccattccc tttttttttt ttc //