Path: utzoo!utgpu!watserv1!watmath!uunet!bionet!PUCC.PRINCETON.EDU!B_FOLEY%UVMVAX From: B_FOLEY%UVMVAX@PUCC.PRINCETON.EDU Newsgroups: bionet.molbio.genbank Subject: Re: message Message-ID: <9102160532.AA04369@genbank.bio.net> Date: 15 Feb 91 16:17:00 GMT Sender: daemon@genbank.bio.net Lines: 202 I hope this is all you needed. If not, write back to: B_FOLEY@UVMVAX.BITNET Brian Foley; Graduate student, U of Vermont ------------------------------------------------------------------------- ! STRINGS from: GenEMBL:* February 15, 1991 10:55 ! searching for: "collagenase" .. OM:Rabcn1 M17820 Rabbit collagenase gene, exon 1. 6/88 718bp OM:Rabcn2 M17821 Rabbit collagenase gene, exons 2, 3, and 4. 6/88 1,0 57bp OM:Rabcn3 M17822 Rabbit collagenase gene, exons 5 and 6. 6/88 831bp OM:Rabcn4 M19240 Rabbit collagenase gene, exons 7 and 8. 6/88 297bp OM:Rabcn5 M17823 Rabbit collagenase gene, exons 9 and 10. 6/88 919bp Pr:Hum4cola J05070 Human type IV collagenase mRNA, complete cds. 3/90 2 ,334bp Pr:Humcn2 M13509 Human skin collagenase mRNA, complete cds. 2/87 1,97 0bp Pr:Humcn25 M15996 Human synovial cell collagenase mRNA. 3/88 261bp Pr:Humcn2a M16567 Human collagenase gene, 5' end. 6/89 698bp Pr:Humcn4gel J03210 Human collagenase type IV mRNA, 3' end. 12/88 2,733b p Pr:Humcollr X05231 Human mRNA for collagenase (E.C. 3.4.24). 6/88 1,968 bp Pr:Humfci M12670 Human fibroblast collagenase inhibitor mRNA, complet e cds. 3/89 769bp Pr:Humpump1 X07819 Human pump-1 mRNA homolog to metalloproteinase, coll agenase and stromelysin. 9/89 1,078bp Pr:Humsccasa M25663 Human synovial cell collagenase mRNA, 3' end. 9/89 5 13bp EM:Hsclg4 M33789 Human type-4 collagenase (CLG4) preproenzyme gene, e xon 1. 4/90 451bp EM:Ssmmp1 X54724 Porcine mmp1 mRNA for matrix metalloproteinase (type I collagenase) (EC 3.4.24.7). 11/90 1,33 ! Sequences searched: 45153 LOCUS HUM4COLA 2334 bp ss-mRNA PRI 15-MAR-1990 DEFINITION Human type IV collagenase mRNA, complete cds. ACCESSION J05070 KEYWORDS collagenase; metalloprotease. SOURCE Human lung fibroblast cDNA to mRNA. ORGANISM Homo sapiens Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (bases 1 to 2334) AUTHORS Wilhelm,S.M., Collier,I.E., Marmer,B.L., Eisen,A.Z., Grant,G.A. and Goldberg,G.I. TITLE SV40-transformed human lung fibroblasts secrete a 92-kDa type IV collagenase which is identical to that secreted by normal human macrophages JOURNAL J. Biol. Chem. 264, 17213-17221 (1989) STANDARD simple staff_review FEATURES Location/Qualifiers CDS 20. .2143 /note="92 kDa type IV collagenase /map='16q21' /hgml_locus_uid='LJ0160L'" /gene="CLG4" BASE COUNT 412 a 760 c 697 g 465 t ORIGIN Pr:Hum4cola Length: 2334 February 15, 1991 10:57 Check: 644 .. 1 AGACACCTCT GCCCTCACCA TGAGCCTCTG GCAGCCCCTG GTCCTGGTGC 51 TCCTGGTGCT GGGCTGCTGC TTTGCTGCCC CCAGACAGCG CCAGTCCACC 101 CTTGTGCTCT TCCCTGGAGA CCTGAGAACC AATCTCACCG ACAGGCAGCT 151 GGCAGAGGAA TACCTGTACC GCTATGGTTA CACTCGGGTG GCAGAGATGC 201 GTGGAGAGTC GAAATCTCTG GGGCCTGCGC TGCTGCTTCT CCAGAAGCAA 251 CTGTCCCTGC CCGAGACCGG TGAGCTGGAT AGCGCCACGC TGAAGGCCAT 301 GCGAACCCCA CGGTGCGGGG TCCCAGACCT GGGCAGATTC CAAACCTTTG 351 AGGGCGACCT CAAGTGGCAC CACCACAACA TCACCTATTG GATCCAAAAC 401 TACTCGGAAG ACTTGCCGCG GGCGGTGATT GACGACGCCT TTGCCCGCGC 451 CTTCGCACTG TGGAGCGCGG TGACGCCGCT CACCTTCACT CGCGTGTACA 501 GCCGGGACGC AGACATCGTC ATCCAGTTTG GTGTCGCGGA GCACGGAGAC 551 GGGTATCCCT TCGACGGGAA GGACGGGCTC CTGGCACACG CCTTTCCTCC 601 TGGCCCCGGC ATTCAGGGAG ACGCCCATTT CGACGATGAC GAGTTGTGGT 651 CCCTGGGCAA GGGCGTCGTG GTTCCAACTC GGTTTGGAAA CGCAGATGGC 701 GCGGCCTGCC ACTTCCCCTT CATCTTCGAG GGCCGCTCCT ACTCTGCCTG 751 CACCACCGAC GGTCGCTCCG ACGGCTTGCC CTGGTGCAGT ACCACGGCCA 801 ACTACGACAC CGACGACCGG TTTGGCTTCT GCCCCAGCGA GAGACTCTAC 851 ACCCGGGACG GCAATGCTGA TGGGAAACCC TGCCAGTTTC CATTCATCTT 901 CCAAGGCCAA TCCTACTCCG CCTGCACCAC GGACGGTCGC TCCGACGGCT 951 ACCGCTGGTG CGCCACCACC GCCAACTACG ACCGGGACAA GCTCTTCGGC 1001 TTCTGCCCGA CCCGAGCTGA CTCGACGGTG ATGGGGGGCA ACTCGGCGGG 1051 GGAGCTGTGC GTCTTCCCCT TCACTTTCCT GGGTAAGGAG TACTCGACCT 1101 GTACCAGCGA GGGCCGCGGA GATGGGCGCC TCTGGTGCGC TACCACCTCG 1151 AACTTTGACA GCGACAAGAA GTGGGGCTTC TGCCCGGACC AAGGATACAG 1201 TTTGTTCCTC GTGGCGGCGC ATGAGTTCGG CCACGCGCTG GGCTTAGATC 1251 ATTCCTCAGT GCCGGAGGCG CTCATGTACC CTATGTACCG CTTCACTGAG 1301 GGGCCCCCCT TGCATAAGGA CGACGTGAAT GGCATCCGGC ACCTCTATGG 1351 TCCTCGCCCT GAACCTGAGC CACGGCCTCC AACCACCACC ACACCGCAGC 1401 CCACGGCTCC CCCGACGGTC TGCCCCACCG GACCCCCCAC TGTCCACCCC 1451 TCAGAGCGCC CCACAGCTGG CCCCACAGGT CCCCCCTCAG CTGGCCCCAC 1501 AGGTCCCCCC ACTGCTGGCC CTTCTACGGC CACTACTGTG CCTTTGAGTC 1551 CGGTGGACGA TGCCTGCAAC GTGAACATCT TCGACGCCAT CGCGGAGATT 1601 GGGAACCAGC TGTATTTGTT CAAGGATGGG AAGTACTGGC GATTCTCTGA 1651 GGGCAGGGGG AGCCGGCCGC AGGGCCCCTT CCTTATCGCC GACAAGTGGC 1701 CCGCGCTGCC CCGCAAGCTG GACTCGGTCT TTGAGGAGCC GCTCTCCAAG 1751 AAGCTTTTCT TCTTCTCTGG GCGCCAGGTG TGGGTGTACA CAGGCGCGTC 1801 GGTGCTGGGC CCGAGGCGTC TGGACAAGCT GGGCCTGGGA GCCGACGTGG 1851 CCCAGGTGAC CGGGGCCCTC CGGAGTGGCA GGGGGAAGAT GCTGCTGTTC 1901 AGCGGGCGGC GCCTCTGGAG GTTCGACGTG AAGGCGCAGA TGGTGGATCC 1951 CCGGAGCGCC AGCGAGGTGG ACCGGATGTT CCCCGGGGTG CCTTTGGACA 2001 CGCACGACGT CTTCCAGTAC CGAGAGAAAG CCTATTTCTG CCAGGACCGC 2051 TTCTACTGGC GCGTGAGTTC CCGGAGTGAG TTGAACCAGG TGGACCAAGT 2101 GGGCTACGTG ACCTATGACA TCCTGCAGTG CCCTGAGGAC TAGGGCTCCC 2151 GTCCTGCTTT GCAGTGCCAT GTAAATCCCC ACTGGGACCA ACCCTGGGGA 2201 AGGAGCCAGT TTGCCGGATA CAAACTGGTA TTCTGTTCTG GAGGAAAGGG 2251 AGGAGTGGAG GTGGGCTGGG CCCTCTCTTC TCACCTTTGT TTTTTGTTGG 2301 AGTGTTTCTA ATAAACTTGG ATTCTCTAAC CTTT TRANSLATE of: hum4cola.pr check: 644 from: 20 to: 2143 generated symbols 1 to: 708. LOCUS HUM4COLA 2334 bp ss-mRNA PRI 15-MAR-1990 DEFINITION Human type IV collagenase mRNA, complete cds. ACCESSION J05070 KEYWORDS collagenase; metalloprotease. SOURCE Human lung fibroblast cDNA to mRNA. . . . Hum4cola.pep Length: 708 February 15, 1991 10:58 Check: 184 .. 1 MSLWQPLVLV LLVLGCCFAA PRQRQSTLVL FPGDLRTNLT DRQLAEEYLY 51 RYGYTRVAEM RGESKSLGPA LLLLQKQLSL PETGELDSAT LKAMRTPRCG 101 VPDLGRFQTF EGDLKWHHHN ITYWIQNYSE DLPRAVIDDA FARAFALWSA 151 VTPLTFTRVY SRDADIVIQF GVAEHGDGYP FDGKDGLLAH AFPPGPGIQG 201 DAHFDDDELW SLGKGVVVPT RFGNADGAAC HFPFIFEGRS YSACTTDGRS 251 DGLPWCSTTA NYDTDDRFGF CPSERLYTRD GNADGKPCQF PFIFQGQSYS 301 ACTTDGRSDG YRWCATTANY DRDKLFGFCP TRADSTVMGG NSAGELCVFP 351 FTFLGKEYST CTSEGRGDGR LWCATTSNFD SDKKWGFCPD QGYSLFLVAA 401 HEFGHALGLD HSSVPEALMY PMYRFTEGPP LHKDDVNGIR HLYGPRPEPE 451 PRPPTTTTPQ PTAPPTVCPT GPPTVHPSER PTAGPTGPPS AGPTGPPTAG 501 PSTATTVPLS PVDDACNVNI FDAIAEIGNQ LYLFKDGKYW RFSEGRGSRP 551 QGPFLIADKW PALPRKLDSV FEEPLSKKLF FFSGRQVWVY TGASVLGPRR 601 LDKLGLGADV AQVTGALRSG RGKMLLFSGR RLWRFDVKAQ MVDPRSASEV 651 DRMFPGVPLD THDVFQYREK AYFCQDRFYW RVSSRSELNQ VDQVGYVTYD 701 ILQCPED*