Path: utzoo!utgpu!watserv1!watmath!uunet!samsung!uakari.primate.wisc.edu!caen!sol.ctr.columbia.edu!ucselx!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Papaya ringspot virus nuclear inclusion protein (NIb protein) gene, Message-ID: Date: 5 Mar 91 13:14:58 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 75 Approved: lear@genbank.bio.net Checksum: 08487 5 LOCUS PAYP 2241 bp ss-RNA VRL 05-MAR-1991 DEFINITION Papaya ringspot virus nuclear inclusion protein (NIb protein) gene, coat protein gene and 3' untranslated region. ACCESSION D00595 KEYWORDS coat protein; nuclear inclusion protein. SOURCE Papaya ringspot virus (strain P), cDNA to genome RNA, clone PRV117. ORGANISM Papaya ringspot virus Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses; Potyvirus. REFERENCE 1 (bases 1 to 2241) AUTHORS Quemada,H., L'Hostis,B., Gonsalves,D., Reardon,I.M., Heinrikson,R., Hiebert,E.L., Sieu,L.C. and Slightom,J.L. TITLE The nucleotide sequences of the 3'-terminal regions of papaya ringspot virus strains W and P JOURNAL J. Gen. Virol. 71, 203-210 (1990) STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Jerry L. Slightom The Upjohn Company Molecular Biology Unit 7242 Kalamazoo MI 49007 U.S.A. Phone: 616-385-5304 Fax: 616-385-7373 Confirmation of this sequence is provided by amino acid analysis and partial amino acid sequencing. FEATURES Location/Qualifiers CDS <1..2016 /note="polyprotein" mat_peptide <1..1152 /note="nuclear inclusion protein (NIb protein)" mat_peptide 1153..2013 /note="coat protein" BASE COUNT 700 a 403 c 551 g 587 t ORIGIN 811 bp upstream of HindIII site. 1 cgctgtgagc gtctctacga agggagaatg ggcgtctgga acggttcgct gaaggcagaa 61 ctgagaccag ctgagatagt gctcgcgaaa aagacaaggt catttacagc agcccctctt 121 gacacactat taggagccaa agtctgcgtt gatgatttca acaactggtt ttacagtaag 181 aatatggagt gcccatggac cgtcgggatg acaaaatttt acaaaggctg ggatgagttc 241 ctgaggaaat ttcctgacgg ctgggtgtac tgtgatgcag atggttccca gttcgatagc 301 tcattaacac catacttgtt gaatgctgtg ctatcaattc ggttatgggc gatggaggat 361 tgggatattg gagagcaaat gcttaagaac ttgtatgggg aaatcactta cacgccaata 421 ttgacaccag atggaacaat tgtcaagaaa ttcaagggca ataatagtgg ccaaccttcg 481 acagttgttg ataatacatt aatggtttta atcacaatgt attacgcact acggaaggct 541 ggttacgata cgaagactca agaagatatg tgtgtatttt atatcaatgg tgatgatctc 601 tgtattgcca ttcacccgga tcatgagcat gttcttgact cattctctag ttcatttgct 661 gagcttgggc ttaagtatga tttcgcacaa aggcatcgga ataaacagaa tttgtggttt 721 atgtcgcatc gaggtattct gattgatgac atttacattc caaaacttga acctgagcga 781 attgtcgcaa ttcttgaatg ggacaaatct aagcttccgg agcatcgatt ggaggcaatc 841 acagcggcaa tgatagagtc atggggtcat ggtgatctaa cacaccagat tcgcagattt 901 taccaatggg ttcttgagca agctccattc aatgagttgg cgaaacaagg aagggcccca 961 tacgtctcgg aagttggatt aagaagattg tacacaagtg aacgtggatc aatggacgaa 1021 ttagaagcgt atatagataa atactttgag cgtgagagag gagactcgcc cgaattacta 1081 gtgtaccatg aatcaaggag cactgatgat tatcaacttg tttgtagcaa caatacgcat 1141 gtgtttcatc agtccaagaa tgaagctgtg gatgctggtt tgaatgaaaa actcaaagag 1201 aaggaaaatc agaaagaaaa agaaaaagaa aaacaaaaag agaaagaaaa agacggtgct 1261 agtgacggaa atgatgtgtc aactagcaca aaaactggag agagagatag agatgtcaat 1321 gttgggacca gtggaacttt cactgttccg agaattaaat catttactga taagatggtt 1381 ctaccgagaa ttaaggggaa gactgtcctt aatttaaatc atcttcttca gtacaatccg 1441 caacaaattg acatttctaa cactcgtgcc actcattcac aatttgagaa gtggtatgag 1501 ggagtgagga atgattatgg ccttaatgat aatgaaatgc aagtgatgct aaatggtttg 1561 atggtttggt gtatcgagaa tggtacatct ccagacatat ctggtgtctg ggttatgatg 1621 gatggggaaa cccaagttga ttatccaatc aagcctttga ttgagcatgc tactccgtca 1681 tttaggcaaa ttatggctca ctttagtaac gcggcagaag catacattgc gaagagaaat 1741 gctactgaga ggtacatgcc gcggtatgga atcaagagaa atttgactga cattagcctc 1801 gctagatacg ctttcgactt ctatgaggtg aattcgaaaa cacctgatag ggctcgcgaa 1861 gctcacatgc agatgaaggc tgcagcgctg cgaaacacca gtcgcaaaat gtttggtatg 1921 gacggcagtg ttagtaacaa ggaagaaaac acggagagac acacagtgga agatgtcaat 1981 agagacatgc actctctcct gggtatgcgc aactaaatac ctgcgcttgt gtgtttgttg 2041 agtctgactc gaccctgttt caccttatgg tactatataa gcattagaat acagagtggc 2101 tgcgccaccg cttctatttt acagtgaggg tagccctccg tgcttttagt attattcgag 2161 ttctctgagt ctccatacag tgtgggtggc ccacgtgata ttcgagcctc ttagaatgag 2221 agaaaaaaaa aaaaaaaaaa a //