Path: utzoo!utgpu!watserv1!watmath!uunet!lll-winken!elroy.jpl.nasa.gov!usc!ucselx!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Dengue virus type 1, capsid, premembrane, membrane, envelope and Message-ID: Date: 5 Mar 91 13:13:59 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 76 Approved: lear@genbank.bio.net Checksum: 04560 5 LOCUS DENP83 2461 bp ss-RNA VRL 05-MAR-1991 DEFINITION Dengue virus type 1, capsid, premembrane, membrane, envelope and nonstructural protein genes. ACCESSION D00503 KEYWORDS capsid protein; envelope protein; membrane protein; nonstructural protein; premembrane protein; structural protein. SOURCE Dengue virus type 1 (strain Philippines 836-1), cDNA to viral RNA. ORGANISM Dengue virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Flaviviridae; Flavivirus (arbovirus group B). REFERENCE 1 (bases 1 to 2461) AUTHORS Chu,M.C., O'Rourke,E.J. and Trent,D.W. TITLE Genetic relatedness among structual protein genes of dengue 1 virus strains JOURNAL J. Gen. Virol. 70, 1701-1712 (1989) STANDARD full staff_entry COMMENT The preM-M coding regions are located between putative signalase cleavage sites that appear to be conserved among DEN-1 strains. FEATURES Location/Qualifiers CDS 91..>2461 /note="polyprotein precursor" mat_peptide 91..432 /note="capsid (C) protein" mat_peptide 433..705 /note="premembrane (prM) protein" mat_peptide 706..930 /note="membrane (M) protein" mat_peptide 931..2412 /note="envelope (E) protein" mat_peptide 2413..>2461 /note="NS1 protein, amino terminus" BASE COUNT 770 a 521 c 635 g 535 t ORIGIN 5'end of virus genome. 1 tcacacaagg aaacagctat caccagatct acgccggaag cttgcttaac gttagactaa 61 cagtttttta ttagagagag cagatctctg atgaacaacc aacggaaaaa gacgggtcga 121 ccgtctttca atatgctgaa acgcgcgaga aaccgcgtgt caactgtttc acagttggcg 181 aagagattct caaaaggatt gctttcaggc caaggaccca tgaaattggt aatggctttt 241 atagcattcc taagatttct agccatacct ccaacagcag gaattttggc tagatggggc 301 tcattcaaga agaatggagc gatcaaagtg ttacggggtt tcaaaaaaga aatctcaaac 361 atgttgaaca taatgaacag gaggaaaaga tctgtgacca tgctcctcat gctgctgccc 421 acagccctgg cgttccatct gaccacccga gggggagagc cgacactgat agttagcaag 481 caggaaagag gaaaatcact tttgtttaag acccctgcag gtgtcaacat gtgcactctc 541 attgcgatgg atttgggaga gttatgtgag gacacaatga cctacaaatg cccccggatc 601 gctgaggcgg aaccagatga cgttgattgc tggtgcaatg ccacagacac atgggtgacc 661 tatgggacgt gttctcaaac cggcgaacac cgacgagaca aacgttccgt ggcactggac 721 ccacacgtgg gacttggtct agaaacaaga accgaaacat ggatgtcctc tgaaggcgcc 781 tggaaacaaa tacaaaaagt ggagacctgg gctctgagac acccaggatt cacggtgata 841 ggcctttttc tagcacatgc tataggaaca tccatcaccc agaaagggat tatttttatt 901 ttgctgatgc tggtaactcc atccatggcc atgcggtgcg tgggaatagg caacagagac 961 ttcgtggaag gactgtcagg agctacgtgg gtggatgtgg tactggagca tggaagttgc 1021 gtcactacca tggcaaaaga caaaccaaca ctggacattg aactcttgaa gacggaggtc 1081 acaaaccctg ccgtcctgcg caaactgtgc attgaagcta aaatatcaaa caccaccacc 1141 gattcgagat gtccaacaca aggagaagcc acgctggtgg aagaacagga cacgaacttt 1201 gtgtgccgac gaacgttcgt ggacagaggc tggggcaatg gttgtgggct attcggaaaa 1261 ggtagcttaa taacgtgtgc taagtttaag tgtgtgacaa aactggaagg aaagatagtc 1321 caatatgaaa acttaaaata ttcagtgata gtcaccgtac acactggaga ccagcaccaa 1381 gttggaaatg agaccacaga acatggaaca attgcaacca taacacctca agctcccacg 1441 tcggaaatac agctgacaga ctacggagct ctaacattgg attgttcacc tagaacaggg 1501 ctagacttta atagaatggt gttgttgaca atggaaaaaa aatcatggct cgtccacaaa 1561 caatggtttc tagacttacc actgccttgg acctcggggg cttcaacatc ccaagagact 1621 tggaatagac aagacttgct ggtcacattt aagacagctc atgcaaaaaa gcaggaagta 1681 gtcgtactag gatcacaaga aggagcaatg cacactgcgt tgactggagc gacagaaatc 1741 caaacgtctg gaacgacaac aatttttgca ggacacctga aatgcagact aaaaatggat 1801 aaactgactt taaaagggat gtcatatgta atgtgcacag ggtcattcaa gttagagaag 1861 gaagtggctg agacccagca tggaactgtt ctagtgcagg ttaaatacga aggaacagat 1921 gcaccatgca agatcccctt ctcgtcccaa gatgagaaag gagtaaccca gaatgggaga 1981 ttgataacag ccaaccccat agtcactgac aaagaaaaac cagtcaacat tgaagcggag 2041 ccaccttttg gtgagagcta cattgtggta ggagcaggtg aaaaagcttt gaaactaagc 2101 tggttcaaga agggaagcac tatagggaaa atgtttgaag caactgcccg tggagcacga 2161 aggatggcca tcctgggaga cactgcatgg gacttcggtt ctataggagg ggtcttcacg 2221 tctgtgggaa aactgataca ccagattttt gggactgcgt atggagtttt gttcagcggt 2281 gtttcttgga ccatgaagat aggaataggg attctgctga catggctagg attaaactca 2341 aggagcacgt ccctttcaat gacgtgtatc gcagttggca tggtcacgct gtacctagga 2401 gtcatggttc aggcggactc gggatgtgta atcaactgga aaggcaaaga actgaaatgt 2461 g //