Path: utzoo!utgpu!watserv1!watmath!uunet!zaphod.mps.ohio-state.edu!usc!ucselx!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Dengue virus type 1, capsid, premembrane, membrane, envelope and Message-ID: Date: 5 Mar 91 13:13:59 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 77 Approved: lear@genbank.bio.net Checksum: 15020 5 LOCUS DENCCV 2474 bp ss-RNA VRL 05-MAR-1991 DEFINITION Dengue virus type 1, capsid, premembrane, membrane, envelope and nonstructural protein genes. ACCESSION D00501 KEYWORDS capsid protein; envelope protein; membrane protein; nonstructural protein; premembrane protein; structural protein. SOURCE Dengue virus type 1 (strain caribbean CV1636/77), cDNA to viral RNA. ORGANISM Dengue virus type 1 Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Flaviviridae; Flavivirus (arbovirus group B). REFERENCE 1 (bases 1 to 2474) AUTHORS Chu,M.C., O'Rourke,E.J. and Trent,D.W. TITLE Genetic relatedness among structual protein genes of dengue 1 virus strains JOURNAL J. Gen. Virol. 70, 1701-1712 (1989) STANDARD full staff_entry COMMENT The preM-M coding regions are located between putative signalase cleavage sites that appear to be conserved among DEN-1 strains. FEATURES Location/Qualifiers CDS 102..>2474 /note="polyprotein precursor" mat_peptide 102..443 /note="capsid (C) protein" mat_peptide 444..716 /note="premembrane (prM) protein" mat_peptide 717..941 /note="membrane (M) protein" mat_peptide 942..2423 /note="envelope (E) protein" mat_peptide 2424..>2474 /note="NS1 protein, amino terminus" BASE COUNT 774 a 515 c 641 g 544 t ORIGIN 5'end of virus genome. 1 ggataaccaa ttcacacaag gaaacagcta tcaccagatc tacgccggaa gcttgcttaa 61 cgttagacta acagtttttt attagagaga gcagatctct gatgaacaac caacggaaaa 121 agacgggtcg accgtctttc aatatgctga aacgcgcgag aaaccgcgtg tcaactggtt 181 cacagttggc gaagagattc tcaaaaggat tgctttcagg ccaaggaccc atgaaattgg 241 tgatggcttt catagcattt ctaagatttc tagccatacc cccaacagca ggaattttgg 301 ctagatggag ctcattcaag aagaatggag cgatcaaagt gttacggggt ttcaaaaaag 361 agatctcaag catgttgaac ataatgaaca ggaggaaaag atccgtgacc atgctcctca 421 tgctgctgcc cacagctctg gcgttccatt tgaccacacg agggggagag ccgacactga 481 tagttagtaa gcaggaaaga ggaaagtcac tcttgtttaa gacctctgca ggtgtcaata 541 tgtgcactct cattgcgatg gatttgggag agttatgtga ggacacaatg acctacaaat 601 gcccccggat cactgagagg caaccagatg acgttgactg ctggtgcaat gccacagaca 661 catgggtgac ctatgggacg tgttctcaaa ccggcgaaca ccgacgagac aaacgttccg 721 tggcactggc cccacacgtg ggacttggtc tagaaacaag aaccgaaaca tggatgtcct 781 ctgaaggcgc ctggaaacaa atacaaaaag tggagacttg ggctttgaga cacccaggat 841 tcacggtgat aggccttttt ttagcacatg ccataggaac atccatcact cagaaaggga 901 tcattttcat tttgctgatg ctggtaacac catcaatggc catgcgatgc gtgggaatag 961 gcaacagaga cttcgttgaa ggactgtcag gagcaacgtg ggtggacgtg gtattggagc 1021 atggaagctg cgtcaccacc atggcaaaaa ataaaccaac attggacatt gaactcttga 1081 agacggaggt cacgaaccct gccgtcctgc gcaaactgtg cattgaagct aaaatatcaa 1141 acaccaccac cgattcaaga tgtccaacac aaggagaggc tacattggtg gaagaacaag 1201 acgcgaactt tgtgtgtcga cgaacgtttg tggacagagg ctggggcaat ggttgtgggc 1261 tattcggaaa aggtagcttc ttgacgtgtg ctaagttcaa gtgtgtgaca aaactggaag 1321 gaaagatagt tcaatatgaa aacttaaaat attcagtcat agtcaccgta cacactgggg 1381 accagcatca agttggaaat gagaccacag aacatggaac aattgcaacc ataacacctc 1441 aagctcccac gtcggaaata cagctgacag actacggagc tctaacattg gattgttcac 1501 ctagaacagg gctagacttt aatagagtgg tgttgttgac aatgaagaaa aaatcatggc 1561 tcgtccacaa acaatggttt ctagacttac cactgccttg gacctcgggg gcttcaacat 1621 cccaagagac ttggaataga caagacttgc tggtcacatt taagacagct catgcaaaga 1681 agcaggaagt agtcgtacta ggatcacaag aaggagcaat gcacactgcg ctgactgggg 1741 cgacagaaat ccagacgtct ggaacgacaa caatttttgc aggacacctg aaatgcagac 1801 taaaaatgga taaactgact ttaaaaggga tgtcatatgt aatgtgcaca gggtcattca 1861 agttagagaa ggaagtggct gagacccagc atggaactgt tctagtgcag gttaaatacg 1921 aaggaacaga tgcaccatgc aagatcccct tctcgtccca agatgagaaa ggagtaaccc 1981 agaatgggag attgataaca gccaacccca tagtcattga caaagaaaaa ccagtcaaca 2041 ttgaagcgga gccacctttt ggtgagagct atattgtggt aggatcaggt gaaaaagctt 2101 tgaaactaag ctggttcaag aagggaagca gtatagggaa aatgtttgaa gcaactgccc 2161 gtggagcacg aaggatggcc atcctgggag acaccgcatg ggacttcggt tctataggag 2221 gggtgttcac gtctgtggga aaactgatac accagatttt tgggactgcg tatggaattt 2281 tgttcagcgg ggtttcttgg accatgaaaa taggaatagg gattctgctg acatggctag 2341 gattaaattc aaggagcacg tccctttcaa tgacgtgtat cgcagttggc atggtcacac 2401 tgtacctagg agtcatggtt caggcggact cgggatgtgt aatcaactgg aaaggcaaag 2461 aactgaaatg tggc //