Path: utzoo!utgpu!watserv1!watmath!uunet!samsung!uakari.primate.wisc.edu!caen!sol.ctr.columbia.edu!ucselx!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Papaya ringspot virus nuclear inclusion protein (NIb protein) gene, Message-ID: Date: 5 Mar 91 13:15:00 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 76 Approved: lear@genbank.bio.net Checksum: 26492 5 LOCUS PAYW 2250 bp ss-RNA VRL 05-MAR-1991 DEFINITION Papaya ringspot virus nuclear inclusion protein (NIb protein) gene, coat protein gene and 3' untranslated region. ACCESSION D00594 KEYWORDS coat protein; nuclear inclusion protein. SOURCE Papaya ringspot virus (strain W), cDNA to genome RNA, clones W1-18, and W1-77. ORGANISM Papaya ringspot virus Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses; Potyvirus. REFERENCE 1 (bases 1 to 2250) AUTHORS Quemada,H., L'Hostis,B., Gonsalves,D., Reardon,I.M., Heinrikson,R., Hiebert,E.L., Sieu,L.C. and Slightom,J.L. TITLE The nucleotide sequences of the 3'-terminal regions of papaya ringspot virus strains W and P JOURNAL J. Gen. Virol. 71, 203-210 (1990) STANDARD full staff_entry COMMENT These data kindly submitted in computer readable form by: Jerry L. Slightom The Upjohn Company Molecular Biology Unit 7242 Kalamazoo MI 49007 U.S.A. Phone: 616-385-5304 Fax: 616-385-7373 Confirmation of this sequence is provided by amino acid analysis and partial amino acid sequencing. FEATURES Location/Qualifiers CDS <1..2029 /note="polyprotein" mat_peptide <1..1165 /note="nuclear inclusion protein (NIb protein)" mat_peptide 1166..2026 /note="coat protein" BASE COUNT 715 a 400 c 542 g 593 t ORIGIN 824 bp upstream of HindIII site. 1 tcttgtacgg aaaagctgtg agcgtctcta cgaagggaga atgggcgttt ggaacggttc 61 gttgaaggca gaactgagac cagctgaaaa agtgctcgcg aaaaagacaa ggtcatttac 121 agcagctcct cttgacacac tattaggagc caaagtctgc gttgatgatt ttaacaactg 181 gttttacagt aagaatatgg agtgcccatg gaccgtcgga atgacaaaat tttacaaagg 241 ctgggacgag ttcctgagga aatttcctga cggctgggtg tactgtgatg cagatggttc 301 ccagttcgat agctcattaa caccatactt gttgaatgct gtgctatcaa ttcggttatg 361 ggcgatggag gattgggata ttggagagca aatgcttaag aacttgtatg gggaaatcac 421 ttacacgcca atattgacac cagatggaac aattgtcaag aaattcaagg gcaataatag 481 tggccaacct tcgacagttg ttgataatac attgatggtt ttaatcacaa tgtattacgc 541 actacggaag gctggttacg atacgaagac tcaagaagat atgtgtgtat tttatatcaa 601 tggtgatgat ctctgtattg ccattcaccc ggatcatgag catgttcttg actcattctc 661 tagatcgttt gctgagcttg ggcttaagta tgatttcaca caaaggcatc ggaataaaca 721 gaatttgtgg tttatgtcgc atcgaggtat tctgattgat gacatttaca ttccaaaact 781 tgaacctgag cgaattgtcg caattcttga atgggacaaa tctaagcttc cggagcatcg 841 attggaagca atcacagcgg caatgataga gtcatggggt tatggtgatc taacacacca 901 gattcgcaga ttttaccaat gggttcttga gcaagctcca ttcaatgagt tggcgaaaca 961 aggaagggcc ccatacgtct cggaagttgg attaagaaga ttgtacacaa gtgaacgtgg 1021 atcaatggat gaattagaag cgtatataga taaatacttt gagcgtgaga gaggagactc 1081 acccgaatta ctagtgtacc atgaatcaag gagcactgat gattatcaac ttgtttgcag 1141 taacaataca catgtgtttc atcagtccaa aaatgaagct gtggatactg gtttgaatga 1201 aaaattcaaa gaaaaggaaa aacagaaaga aaaagaaaaa gaaaaacaaa aagagaaaga 1261 aaaagacgat gctagtgacg gaaatgatgt gtcaactagc acaaaaactg gagagagaga 1321 tagagatgtc aatgttggga ccagtggaac tttcactgtt ccgagaatta aatcatttac 1381 tgataagatg attctaccga gaattaaggg aaagtctgtc cttaatttaa atcacctact 1441 tcagtataat ccgcaacaaa ttgacatttc taacactcgt gccactcagt cacaatttga 1501 gaagtggtat gagggagtga ggaatgatta tggccttaat gataatgaaa tgcaagtgat 1561 gctaaatggt ttgatggttt ggtgtatcga gaatggtaca tctccagaca tatctggtgt 1621 ctgggttatg atggatgggg aaacccaagt tgattatcca atcaagcctt taattgagca 1681 tgctactccg tcatttaggc aaattatggc tcactttagt aacgcggcag aagcatacat 1741 tgcgaaaaga aatgctactg agaggtacat gccgcggtat ggaatcaaga gaaatttgac 1801 tgacattagc ctcgctagat acgctttcga cttctatgag gtgaattcga aaacacctga 1861 tagggctcgc gaagcccaca tgcagatgaa ggctgcagca ctgcgaaaca ctagtcgcag 1921 aatgtttggt atggacggca gtgttagtaa caaggaagaa aacacggaga gacacacagt 1981 ggaagacgtc aatagagaca tgcactctct cctgggtatg cgcaactaaa tacttgcgct 2041 tgtgtgtttg tcgagcttga ctcgaccctg tttcacctta tagtactata taagcattag 2101 aatacagtgt ggctgcgcca ccgcttctat tttacagtga gggtagccct ccgtgctttt 2161 agtattattc gagttctctg agtctccata cagtgtgggt ggcccacgtg ctattcgagc 2221 ctcttagaat gagagaaaaa aaaaaaaaaa //