Path: utzoo!utgpu!watserv1!watmath!uunet!decwrl!sdd.hp.com!wuarchive!uwm.edu!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Vaccinia virus HindIII-I and G fragments. Message-ID: Date: 6 Mar 91 13:00:46 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 249 Approved: lear@genbank.bio.net Checksum: 44661 16 LOCUS VACHIND3IG 9826 bp ds-DNA VRL 06-MAR-1991 DEFINITION Vaccinia virus HindIII-I and G fragments. ACCESSION J03399 M29901 KEYWORDS ribonucleotide reductase. SOURCE Vaccinia virus (strain WR) DNA. ORGANISM Vaccinia virus Viridae; ds-DNA enveloped viruses; Poxvirinae; Orthopoxvirus. REFERENCE 1 (bases 1 to 6498) AUTHORS Schmitt,J.F. and Stunnenberg,H.G. TITLE Sequence and transcriptional analysis of the Vaccinia virus HindIII I fragment JOURNAL J. Virol. 62, 1889-1897 (1988) STANDARD full staff_entry REFERENCE 2 (bases 6494 to 9826) AUTHORS Fathi,Z. and Condit,R.C. TITLE Genetic and molecular biological characterization of a vaccinia virus temperature-senstive complementation group affecting a virion component JOURNAL Virology 181, 258-272 (1991) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [J. Virol. 62, 1889-1897 (1988)] kindly submitted by J.F.C.Schmitt, 29-MAR-1988. Draft entry and computer-readable sequence for [Virology 181, 258-272 (1991)] kindly submitted by R.C.Condit, 15-NOV-1989. FEATURES Location/Qualifiers mRNA complement(<1..62) /note="mRNA I1 late" mRNA complement(<68..290) /note="mRNA I2 late" mRNA complement(<290..1160) /note="mRNA I3 late" mRNA complement(<3524..3765) /note="mRNA I5 late" mRNA complement(<4923..6195) /note="mRNA I7 late" CDS complement(<1..61) /note="ORF I1" /codon_start=61 CDS complement(68..289) /note="ORF I2" /codon_start=289 mRNA complement(103..1126) /note="mRNA I3 early" CDS complement(290..1099) /note="ORF I3" /codon_start=1099 mRNA complement(1135..3516) /note="mRNA I4 early" CDS complement(1182..3497) /note="pot. ribonucleotide reductase" /codon_start=3497 CDS complement(3524..3763) /note="ORF I5" /codon_start=3763 CDS complement(4923..6194) /note="ORF I7" /codon_start=6194 mRNA 5681..7632 /note="mRNA early (smaller)" mRNA 5681..>8261 /note="mRNA early" CDS 6200..8230 /note="ORF I8" /codon_start=6200 mutation 6821..6821 /note="g in wild type, a in mutant ts 18" mutation 7128..7128 /note="c in wild type, a in mutant ts 10" mutation 7604..7604 /note="g in wild type, a in mutant ts 39" misc_signal 7611..7617 /note="early transcription terminator" mutation 7835..7835 /note="c in wild type, t in mutants ts 38, 44" CDS complement(8234..>9826) /note="ORF G1" /codon_start=9826 misc_signal 8255..8261 /note="early transcription terminator" BASE COUNT 3170 a 1745 c 1559 g 3352 t ORIGIN 1 bp upstream of HindIII site. 1 aagctttcaa tgcacgggca ctgatactat tgaaaacgag ttgatcttca aattccgcca 61 tttaagttca ccaaacaact tttaaataca aatatatcaa tagtagtaga ataagaacta 121 taaaaaaaat aataattaac caataccaac cccaacaacc ggtattatta gttgatgtga 181 ctgttttctc atcacttaga acagatttaa caatttctat aaagtctgtc aaatcatctt 241 ccggagaccc cataaataca ccaaatatag cggcgtacaa cttatccatt tatacattga 301 atattggctt ttctttatcg ctatcttcat catattcatc atcaatatca acaagtccca 361 gattacgagc cagatcttct tctacatttt cagtcattga tacacgttca ctatctccag 421 agagtccgat aacgttagcc accacttctc tatcaatgat tagtttcttg agtgcgaatg 481 taatttttgt ttccgttccg gatctataga aaactacagg tgtgataatt gccttggcca 541 attgtctttc tcttttactg agtgattcta gttcaccttc tatagatctg agaatggatg 601 attctccagt cgaaacatat tctaccatgg ctccgtttaa tttgttgatg aagatggatt 661 catccttaaa tgttttctct gtaatagttt ccaccgaaag actatgcaaa gaatttggaa 721 tgcgttcctt gtgcttaatg tttccataga cggcttctag aagttgatac aacataggac 781 tagccgcggt aacttttatt tttagaaagt atccatcgct tctatcttgt ttagatttat 841 ttttataaag tttagtctct ccttccaaca taataaaagt ggaagtcatt tgactagata 901 aactatcagt aagttttata gagatagacg aacaattagc gtattgagaa gcatttagtg 961 taacgtattc gatacatttt gcattagatt tactaatcga ttttgcatac tctataacac 1021 ccgcacaagt ctgtagagaa tcgctagatg cagtaggtct tggtgaagtt tcaactctct 1081 tcttgattac cttactcatg attaaaccta aataattgta ctttgtaata taatgatata 1141 tattttcact ttatctcatt tgagaataaa aatgtttttg tttaaccact gcatgatgta 1201 cagatttcgg aatcacaaac caccggtggt tttattttat ccttgtccaa tgtgaattga 1261 atgggagcgg atgcgggttt cgtacgtaga tagtacattc ccgtttttag accgagactc 1321 catccgtaaa aatgcatact cgttagtttg gaataactcg gatctgctat atggatattc 1381 atagattgac tttgatcgat gaaggctccc ctgtctgcag ccatttttat gatcgtcttt 1441 tgtggaattt cccaaatagt tttataaact cgcttaatat cttctggaag gtttgtattc 1501 tgaatggatc caccatctgc cataatccta ttcttgatct catcattcca taattttctc 1561 tcggttaaaa ctctaaggag atgcggatta actacttgaa attctccaga caatactctc 1621 cgagtgtaaa tattactggt atacggttcc accgactcat tatttcccaa aatttgagca 1681 gttgatgcag tcggcatagg tgccaccaat aaactatttc taagaccgta tgttctgatt 1741 ttatctttta gaggttccca attccaaaga tccgacggta caacattcca aagatcatat 1801 tgtagaatac cgttactggc gtacgatcct acatatgtat cgtatggtcc ttccttctca 1861 gctagttcac aactcgcctc taatgcaccg taataaatgg tttcgaagat cttcttattt 1921 agatcttgtg cttccaggct atcaaatgga taatttaaga gaataaacgc gtccgctaat 1981 ccttgaacac caataccgat aggtctatgt ctcttattag agatttcagc ttctggaata 2041 ggataataat taatatctat aattttattg agatttctga caattacttt gaccacatcc 2101 ttcagtttga gaaaatcaaa tcgcccatct attacaaaca tgttcaaggc aacagatgcc 2161 agattacaaa cggctacctc attagcatcc gcatattgta ttatctcagt gcaaagatta 2221 ctacacttga tagttcctaa attttgttga ttactctttt tgttacacgc atccttataa 2281 agaatgaatg gagtaccagt ttcaatctga gattctataa tcgctttcca gacgactcga 2341 gcctttatta tagatttgta tctcctttct ctttcgtata gtgtatacaa tcgttcgaac 2401 tcgtctcccc aaacattgtc caatccagga cattcatccg gacacatcaa cgaccactct 2461 ccgtcatcct tcactcgttt cataaagaga tcaggaatcc aaagagctat aaatagatct 2521 ctggttctat gttcctcgtt tcctgtattc tttttaagat cgaggaacgc cataatatca 2581 gaatgccacg gttccaagta tatggccata actccaggcc gtttgtttcc tccctgatct 2641 atgtatctag cggtgttatt ataaactctc aacattggaa taataccgtt tgatatacca 2701 ttggtaccgg agatatagct tccactggca cgaatattac taattgatag acctattccc 2761 cctgccattt tagagattaa tgcgcatcgt tttaacgtgt catagatacc ctctatgcta 2821 tcatcgatca tgttaagtag aaaacagcta gacatttggt gacgactagt tcccgcatta 2881 aataaggtag gagaagcgtg cgtaaaccat ttttcagaaa gtagattgta cgtctcaata 2941 gctgagtcta tatcccattg atgaattcct actgcgacac gcattaacat gtgctgaggt 3001 ctttcaacga tcttgttgtt tattttcaac aagtaggatt tttccaaagt tttaaaacca 3061 aaatagttgt atgaaaagtc tcgttcgtaa ataataaccg agttgagttt atccttatat 3121 ttgttaacta tatccatggt gatacttgaa ataatcggag aatgtttccc atttttagga 3181 ttaacatagt tgaataaatc ctccatcact tcactaaata gtttttttgt ttccttgtgt 3241 agatttgata cggctattct ggcggctaga atggcataat ccggatgttg tgtagtacaa 3301 gtggctgcta tttcggctgc cagagtgtcc aattctaccg ttgttactcc attatatatt 3361 ccttgaataa ccttcatagc tattttaata ggatctatat gatccgtgtt taagccataa 3421 cataattttc taatacgaga cgtgatttta tcaaacatga cattttcctt gtatccattt 3481 cgtttaatga caaacatttt tgttggtgta ataaaaaaat tatttaactt ttcattaata 3541 gggatttgac gtacgtagcg tacaaaatga ttgttcctgg tatatagata aagagtccta 3601 tatatttgaa aatcgttacg gctcgattaa actttaatga ttgcatagtg aatatatcat 3661 taggatttaa ctccttgact atcagggcgg caccagaaat taccatcaaa agcattaata 3721 cagttatgcc tatcgcagtt agaacggtta tagcatccac catttatatc taaaaattag 3781 atcaaagaat atgtgacaaa gtcctagttg tatattgaga attgacaaaa caatgtttct 3841 tacatatttt ttttttatta gtaaccgact taatagtagg aactggaaaa ctagacttga 3901 ttattctata agtatagata cccttccaaa taatattctc tttgataaaa gttccagaaa 3961 atgtagaatt ttttaaaaag ttatcttttg ctattaccaa gattgtgttt agacgcttat 4021 tattaatatg agtgatgaaa tccacaccgc ctctagatat cgcctttatt tccacattag 4081 atggtaaatc caatagtgaa actatctttt taggaatgta tggactcgcg tttagaggag 4141 tgaacgtctt gggcgtcgga aaggatgatt cgtcaaacga ataaacaatt tcacaaatgg 4201 atgttaatgt attagtagga aattttttga cgctagtgga attgaaaatt ctaatggatg 4261 atgttctacc tatttcatcc gataacatgt taatttccga caccaacggt tttaatattt 4321 cgatgatata cggtagtctc tctttcggac ttatatagct tattccacaa tacgagtcat 4381 tatatactcc aaaaaacaaa ataactagta taaaatctgt atcgaatggg aaaaacgaaa 4441 ttatcgacat aggtatagaa tccggaacat tgaacgtatt aatacttaat tctttttctg 4501 tggtaagtac cgataggtta ttgacattgt atggttttaa atattctata acttgagact 4561 tgatagatat tagtgatgaa ttgaaaatta tttttatcac cacgtgtgtt tcaggatcat 4621 cgtcgacgcc cgtcaaccaa ccgaacggag taaaataaat atcattaata tatgctctag 4681 atattagtat ttttatcaat cctttgatta tcatcttctc gtaggcgaat gattccatga 4741 tcaagagtga tttaagaaca tcctccggag tattaatggg cttagtaaac agtccatcgt 4801 tgcaataata aaagttatcc aagttaaagg atattatgca ttcgtttaaa gatatcacct 4861 catctgacgg agacaatttt ttggtaggtt ttagagactt tgaagctact tgtttaacaa 4921 agttattcat cgtcgtttac tattctattt aattttgtag ttaatttatc acatatcaca 4981 ttaattgact ttttggtcca tttttccata cgtttatatt cttttaatcc tgcgttatcc 5041 gtttccgtta tatccagtga tagatcgtgc aggttaaata gaatgctctt aaataatgtc 5101 atttttttat ccgctaaaaa tttaaagaat gtataaactt ttttcaaaga tttaaaactt 5161 ttaggtggtg tcctagtaca caatatcata aacaaactaa taaacatccc gcattcagat 5221 tccaacagct gattaacttc cacattaata cagcctattt tcgctccaaa tgtacattcg 5281 aaaaatctga ataaaacatc aatgtcgcaa tttgtattat ccaatacaga atgtttgtga 5341 ttcgtgttaa aaccatcgga gaaggaatag aaataaaaat tattatagtg gtggaattca 5401 gttggaatat tgcctccgga gtcataaaag gatactaaac attgtttttt atcataaatt 5461 acacatttcc aatgagacaa ataacaaaat ccaaacatta caaatctaga ggtagaactt 5521 ttaattttgt ctttaagtat atacgataag atatgtttat tcataaacgc gtcaaatttt 5581 tcatgaatcg ctaaggagtt taagaatctc atgtcaaatt gtcctatata atccacttcg 5641 gatccataag caaactgaga gactaagttc ttaatacttc gattgctcat ccaggctcct 5701 ctctcaggct ctattttcat cttgacgacc tttggatttt caccagtatg tattccttta 5761 cgtgataaat catcgatttt caaatccatt tgtgagaagt ctatcgcctt agatactttt 5821 tcccgtagtc gaggtttaaa gaaatacgct aacggtatac tagtaggtaa ctcaaaaaca 5881 tcatatatag aatggtaacg cgtctttaac tcgtcggtta actctttctt ttgatcgagt 5941 tcgtcgctac tattgggtct gctcaggtgc cccgactcta ctagttccaa catcataccg 6001 ataggaatac aagacacttt gccggcggtt gtagatttat catatttttc cactacatat 6061 ccgttacaat ttgttaaaaa tttagataca tctatattgc tacataatcc agctagtgaa 6121 tatatatgac ataataaatt ggtaaatcct agttctggta ttttactaat tactaaatct 6181 gtatatcttt ccatttatca tggaaaagaa tttaccagat atcttctttt ttccaaactg 6241 cgttaatgta ttctcttaca aatattcaca agatgaattc agtaatatga gtaaaacgga 6301 acgtgatagt ttctcattgg ccgtgtttcc agttataaaa catagatggc ataacgcaca 6361 cgttgtaaaa cataaaggaa tatacaaagt tagtacagaa gcacgtggaa aaaaagtatc 6421 tcctccatca ctaggaaaac ccgcacacat aaacctaacc gcgaagcaat atatatacag 6481 tgaacacaca ataagctttg aatgttatag ttttctaaaa tgtataacaa atacagaaat 6541 caattcgttc gatgagtata tattaagagg actattagaa gctggtaata gtttacagat 6601 attttccaat tccgtaggta aacgaacaga tactataggt gtactaggga ataagtatcc 6661 atttagcaaa attccattgg cctcattaac tcctaaagca caacgagaga tattttcagc 6721 gtggatttct catagacctg tagttttaac tggaggaact ggagtgggta agacgtcaca 6781 ggtacccaag ttattgcttt ggtttaatta tttatttggt ggattctcta ctctagataa 6841 aatcactaac tttcacgaaa gaccagtcat tctatctctt cctaggatag ctttagttag 6901 attgcatagc aataccattt taaaatcatt gggatttaag gtactagatg gatctcctat 6961 ttctttacgg tacggatcta taccggaaga attaataaac aaacaaccaa aaaaatatgg 7021 aattgtattt tctacccata agttatctct aacaaaacta tttagttatg gcactcttat 7081 tatagacgaa gttcatgagc atgatcaaat aggagatatt attatagcag tagcgagaaa 7141 gcatcatacg aaaatagatt ctatgttttt aatgactgcc acgttagagg atgaccgaga 7201 acggctaaaa gtatttttac ctaatcccgc atttatacat attcctggag atacactgtt 7261 taaaattagc gaggtattta ttcataataa gataaatcca tcttccagaa tggcatacat 7321 agaagaagaa aagagaaatt tagttactgc tatacagatg tatactcctc ctgatggatc 7381 atccggtata gtctttgtgg catccgttgc acagtgtcac gaatataaat catatttaga 7441 aaaaagatta ccgtatgata tgtatattat tcatggtaag gtcttagata tagacgaaat 7501 attagaaaaa gtgtattcat cacctaatgt atcgataatt atttctactc cttatttgga 7561 atccagcgtt actatacgca atgttacaca catttatgat atgggtaaag tttttgtccc 7621 cgctcctttt ggaggatcgc aagaatttat ttctaaatct atgagagatc aacgaaaagg 7681 aagagtagga agagttaatc ctggtacata cgtctatttc tatgatctgt cttatatgaa 7741 gtctatacag cgaatagatt cagaatttct acataattat atattgtacg ctaataagtt 7801 taatctaaca ctccccgaag atttgtttat aatccctaca aatttggata ttctatggcg 7861 tacaaaggaa tatatagact cgttcgatat tagtacagaa acatggaata aattattatc 7921 caattattat atgaagatga tagagtatgc taaactttat gtactaagtc ctattctcgc 7981 tgaggagttg gataactttg agaggacggg agaattaact agtattgtac gagaagccat 8041 tttatctcta aatttacgaa ttaagatttt aaattttaaa cataaagatg atgatacgta 8101 tatacacttt tgtaaaatat tattcggtgt ctataacgga acaaacgcta ctatatatta 8161 tcatagacct ctaacgggat atatgaatat gatttcagat actatatttg ttcctgtaga 8221 taataactaa aaatcaaact ctaatgacca catctttttt tagagatgaa aaattttcta 8281 catctccttt tgtagacacg actaaacatt ttgcaaaaaa aagtttatta gtgtttagat 8341 aatcgtatac ttcatcagtg tagatagtaa atgtgaacaa ataaaaggta ttcttactca 8401 atagattggt aaattccata gaatatatta atcctttctt cttgagatcc cacatcattt 8461 caaccagaga cgttttatcc aatgatttac ctcgtactat accacataca aaactagatt 8521 ttgcagtgac gtcgtacctg gtattcctac caaacaaaat tttactttta gttcttttag 8581 aaaattctaa ggtagaatct ctatttgcca atatgtcatc tatggaatta ccactagcaa 8641 aaaatgatag aaatatatat tgatacatcg cagctggttt tgatctacta tactttaaaa 8701 acgaatcaga ttccataatt gcctgtatat catcagctga aaaactatgt tttacacgta 8761 ttccttcggc atttcttttt aatgatatat cttgtttaga caatgataaa gttatcatgt 8821 ccatgagaga cgcgtctccg tatcgtataa atatttcatt agatgttaga cgcttcatta 8881 ggggtatact tctataaggt ttcttaatca gtccatcatt ggttgcgtca agaactacta 8941 tcggatgttg ttgggtatct ctagtgttac acatggcctt actaaagttt gggtaaataa 9001 ctatgatatc tctattaatt atagatgcat atatttcatt cgtcaaggat attagtatcg 9061 acttgctatc gtcattaata cgtgtaatgt aatcatataa atcatgcgat agccaaggaa 9121 aattcaaata gatgttcatc atataatcgt cgctataatt catattaata cgttgacatt 9181 gactaatttg taatatagcc tcgccacgaa gaaagctctc gtattcagtt tcatcgataa 9241 aggataccgt taaatataac tggttgccga tagtctcata gtctattaag tggtaagttt 9301 cgtacaaata cagaatccct aaaatattat ctaatgttgg attaatcttt accataactg 9361 tataaaatgg agacggagtc ataactattt taccgtttgt acttactgga atagacgaag 9421 gaataatctc cggacatgct ggtaaagacc caaatgtctg tttgaagaaa tccaatgttc 9481 caggtcctaa tctcttaaca aaaattacga tattcgatcc cgatatcctt tgcattctat 9541 ttaccagcat atcacgaact atattaagat tatctatcat gtctattctc ccaccgttat 9601 ataaatcgcc tccgctaaga aacgttagta tatccataca atggaatact tcatttctaa 9661 aatagtattc gttttctaat tctttaatgt gaaatcgtat actagaaagg gaaaaattat 9721 ctttgagttt tccgttagaa aagaaccacg aaactaatgt tctgattgcg tccgattccg 9781 ttgctgaatt aatggattta caccaaaaac tcatataact tctaga //