Path: utzoo!utgpu!news-server.csri.toronto.edu!rpi!usc!apple!agate!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Visna virus Icelandic strain 1514, complete genome. Message-ID: Date: 19 Mar 91 13:04:09 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 199 Approved: lear@genbank.bio.net Checksum: 45039 14 LOCUS VLVLV1A 9221 bp ds-DNA VRL 19-MAR-1991 DEFINITION Visna virus Icelandic strain 1514, complete genome. ACCESSION M60609 M37977 KEYWORDS complete genome; envelope protein; gag protein; pol protein; protein Q; protein S. SOURCE Visna virus (strain Icelandic 1514) DNA, infectious clone LV1-1KS1. ORGANISM Visna virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Lentivirinae. REFERENCE 1 (bases 1 to 9221) AUTHORS Staskus,K.A., Retzel,E.F., Lewis,E.D., Wietgrefe,S.W., Silsby,J.L., St. Cyr,S., Rank,J.M., Haase,A.T., Fast,D., Geiser,P.T., Harty,J.T., Kong,S.H., Cook,R., Lahti,C.J., Neufeld,T.P., Porter,T.E., Shoop,E. and Zachow,K.R. TITLE Isolation of replication-competent molecular clones of Visna virus JOURNAL Virology 181, 228-240 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers LTR 1..161 /note="U5 region" CDS 340..1818 /gene="gag" /codon_start=340 /partial CDS 1692..5009 /gene="pol" /codon_start=1692 /partial CDS 4957..5658 /gene="protein Q" /codon_start=4957 /partial CDS 5655..5942 /gene="protein S" /codon_start=5655 /partial CDS 5936..8926 /gene="env" /codon_start=5936 /partial LTR 9117..9221 /note="U3 region" BASE COUNT 3421 a 1421 c 2407 g 1972 t ORIGIN 1 gggaaaagca gagtgctttg gagagctcga aggaaagagt ctccgggcct ctcctgcctg 61 cctgaaaagc tcaataaagg agttggctga tatctgagct tgcctggtta ttatcgggat 121 tcgttactaa ttccgtgcaa caccggagcg gatctcgcag ctggcgccca acgtggggct 181 cgacaaagaa tcagaagaaa aatgagagtt atgggaccac ggacgctgct cctgtgagga 241 cggcgaggag agtaacggac acggacaaaa agtgaaagaa agcttcgggg acgcctgaag 301 taaggtaaga gagacaccta ctggggaagt agggaatagc ccttcagtga aggagaaagt 361 gttgcttggg cacaggagga gggttcgcga ccccttagaa agacggaggg gcgcgggcgt 421 cctcttgggc cgaggggaca caagagcaac actggtaagg aagccgccgt ggtgaggcta 481 gctagagaca tggcgaagca aggctcaaag gagaaaaagg gataccccga gctcaaggaa 541 gtaattaaag caacttgtaa aataagggta gggcccggga aggagacctt gacggaaggg 601 aattgtctat gggcattaaa aactatagac tttatatttg aggatttaaa aacagagccg 661 tggacgatta caaaaatgta tacagtatgg gatagattaa aagggctaac tccggaggaa 721 acaagcaaaa gagaattcgc ctccttgcaa gctacgttgg cttgcataat gtgtagtcaa 781 atgggcatga agcccgagac agtgcaggca gcaaagggaa taataagtat gaaagaagga 841 ctacaagaaa ataaggaggc caagggggag aaggtagagc aactctaccc caacttagag 901 aaacataggg aagtttaccc tattgtgaat ttgcaagcag gagggagaag ttggaaggcg 961 gtagagtcag tagtcttcca gcaactgcaa acagtggcaa tgcagcatgg acttgtgtcc 1021 gaggattttg agaggcaatt ggcatattat gctactacct ggactagtaa agatatatta 1081 gaagtattgg ctatgatgcc tgggaataga gcacagaagg aattaataca aggaaaatta 1141 aatgaagaag cagaaaggtg ggtaagacaa aatccacccg ggccgaatgt cctcacggtg 1201 gatcaaataa tgggagtggg acaaaccaat cagcaagcat ctcaagccaa tatggatcag 1261 gcaagacaga tatgccggca gtgggtaata acagcgttaa gatcagtgag gcatatgtca 1321 catagaccag gaaaccctat gttagtgaag cagaagaata ctgagagtta tgaagacttc 1381 atagctcgcc tactagaggc tattgatgcg gaaccagtga cggaccctat aaaaacatat 1441 ttaaaagtaa cattgtcata tacaaatgct agcacagact gtcaaaagca gatggatagg 1501 acattaggga cgagggttca acaagcaacg gtagaagaaa agatgcaagc atgtcgagat 1561 gtgggatccg aaggatttaa gatgcaatta ttagcacaag ctttgagacc gcaagggaag 1621 gcaggacaca aaggggtaaa tcaaaagtgt tataattgtg gaaaaccagg acatctcgca 1681 agacagtgta gacaaggaat aatatgccat cattgtggaa aaagaggaca tatgcaaaag 1741 gactgccggc agaagaaaca gcagggaaac aacaggaggg ggccacgtgt ggtgccgtcc 1801 gcgcccccta tgttgtaaca gaagcaccac ccaaaataga aataaaagta ggaacaaggt 1861 ggaaaaaatt attagtagat acgggggcag ataaaactat agtaacatcc catgatatgt 1921 cagggatacc aaagggaagg ataatattac agggcatagg gggaataata gaaggagaaa 1981 aatgggaaca agtacacttg caatataaag ataaaataat cagaggtacc atagtggtgt 2041 tagctacgag tccggtagaa gtattaggaa gagataatat gagcgaattg ggaataggat 2101 taattatggc aaatttagaa gaaaagaaaa ttcccattac agaagtaaga ttaaaagagg 2161 gatgtaaggg accccacata gcgcaatggc ctttgacgca agaaaaatta gagggattaa 2221 aagaaatagt agacagatta gagaaggaag ggaaagtagg aagagcgccc ccacactgga 2281 cttgtaatac ccctatattt tgtattaaga agaaatcagg aaaatggagg atgttaatag 2341 attttagaga gttaaataag caaacagaag atttagcaga agcacagtta gggttaccgc 2401 atccaggagg attacagaga aagaaacatg taacaatatt agatatagga gatgcatatt 2461 ttacaatacc attatatgag ccatatagac aatatacatg ctttaccatg ttaagtccaa 2521 ataatttagg accatgtgta agatattatt ggaaagtgtt accacaagga tggaaattaa 2581 gtccttcagt gtatcaattt acaatgcaaa aaatattaag aggatggata gaagaacacc 2641 ctatgataca atttggaata tacatggatg atatctatat agggagtgat ttaggattag 2701 aagagcacag gggtatcgtg aacgaactag catcatatat agcgcaatat ggatttatgc 2761 tgcctgaaga taagaggcaa gaaggatacc cggctaaatg gcttggattt gaattacatc 2821 cggagaaatg gaaatttcaa aaacatacgc tcccagagat tacagaagga cccataacct 2881 tgaataaact acagaaatta gtaggagatt tagtttggag acaatcccta ataggaaaaa 2941 gcatcccaaa tatcttaaaa ttaatggaag gagatagggc tttacaaagt gaaagataca 3001 tagagagtat acatgtaaga gaatgggaag cctgtagaca aaagctgaag gaaatggaag 3061 gaaattatta tgatgaagag aaggatatct atgggcaact agattgggga aataaagcaa 3121 tagaatacat agtatttcaa gaaaaaggaa aacctttatg ggtaaatgta gtacatagta 3181 ttaagaattt gagtcaagcc caacaaatta tcaaagcagc acaaaaactg acacaagaag 3241 taataataag aacaggcaag ataccctgga ttttgttgcc gggaagggaa gaagattgga 3301 tattagagtt acaaatggga aacataaatt ggatgccatc attttggtca tgttataaag 3361 gctcggtgag gtggaaaaag aggaatgtaa tagcggaagt agtctcagga ccaacatatt 3421 ataccgatgg aggaaagaaa aatgggcggg gaagcctggg gtatattgcc tccacaggtg 3481 aaaagtttag aatatatgaa gaagggacaa atcagcagtt agaattgagg gccatagaag 3541 aggcatgtaa acagggacca gaaaaaatga atatagtaac agatagcagg tatgcatatg 3601 aatttatgtt gcggaactgg gacgaagaag taataagaaa ccctatacaa gcgagaatca 3661 tggaattaat gcataataaa gaaaaaatag gggtacattg ggtgcctgga cacaagggga 3721 ttcctcaaaa tgaagaaata gataggtata tctcagaaat atttttagca aaagagggaa 3781 gagggatttt acaaaaaagg gcagaagatg ctggatatga cttaatatgt ccacaggaga 3841 taagcattcc ggcgggacaa gtgaaaagga tagcaattga cttgaaaata aatttgaaaa 3901 aggaccaatg ggccatgata gggaccaaaa gcagttttgc aaataaggga gtatttgtac 3961 aaggaggtat catagattcg ggatatcaag gaacaataca agtagtaata tataatagta 4021 ataataaaga agtagtaata ccacagggaa gaaaatttgc acagttgatc ctcatgcctc 4081 taatacatga agagttggag ccatggggag aaacaagaaa aacagaaaga ggggaacagg 4141 gatttggatc aacagggatg tattggatag aaaatattcc cctagcagaa gaagagcata 4201 acaaatggca tcaagatgct gtgtccttgc atttagaatt tgggattccc aggacagctg 4261 cagaagatat agttcaacaa tgtgatgtgt gtcaagaaaa taaaatgcct agtacattaa 4321 gaggcagtaa taaaaggggc atagaccatt ggcaagtaga ctatacccac tatgaagaca 4381 agataatatt ggtctgggta gaaacaaatt caggactaat ctatgcagaa agggtaaaag 4441 gagaaacagg acaagaattt agggtgcaaa ctatgaaatg gtatgcgatg tttgccccga 4501 aatcattgca gtctgataac ggaccagcat ttgtagcaga atctactcag ctcttaatga 4561 aatatttggg catagaacat actacaggga tcccctggaa cccacaatct caagcattag 4621 tagagagaac acatcagacg ttaaagaata cattagaaaa acttatacct atgtttaatg 4681 cgtttgaatc agccctcgca gggaccctca ttactctaaa tataaaaaga aagggtgggc 4741 tagggacaag ccctatggat atatttatat ttaataagga acaacaaaga atacagcaac 4801 aaagtaaatc aaaacaagaa aaaattcgat tttgttatta cagaacaaga aaaagagggc 4861 atccaggaga gtggcaagga ccaacacagg tactttgggg cggggacggt gcgattgtag 4921 tgaaagacag aggcacagat agatatctgg tgatagctaa caaagatgtt aagttcatac 4981 cgccaccaaa agaaatacaa aaagaataaa gcaagggaga taggacccca gttgccacta 5041 tgggcatgga aagaaacagc atttagtata aatcaagaac cctattggta tagtaccata 5101 aggctacaag ggttgatgtg gaataaaaga gggcataaac ttatgtttgt aaaagaaaac 5161 caagggtatg agtattggga aacatcagga aaacagtgga aaatggaggt aagacgagat 5221 ctggatctga tagcccaaat aaactttaga aatgcatggc aatataaaag ccagggagaa 5281 tggaaaacaa taggggtctg gtatgaatca ccaggggatt acaagggaaa agagaatcag 5341 ttttggttcc attggagaat agctctctgc agctgtaaca aaacaggatg ggatatacgg 5401 gaattcatga tagggaagca taggtgggat ttatgtaaat cgtgtataca aggggagata 5461 gttaagaata caaatccaag aagcttacaa cgcttagctt tattgcacct agcaaaagac 5521 catgtatttc aagtaatgcc attgtggaga gctaggagag tcacagtgca gaagttttca 5581 tggtgtcgta gcccaatggg ttacacgata ccttggtctc tgcaggaatg ctgggaaatg 5641 gaatccatct ttgaataatg gaagaagtac caagaaggca gccaggagga ttagtagaag 5701 cagagggagt atttcaagtt tatgaagact gggaatgttg ggactatgta agtcaaagag 5761 tacctgacga aagactacaa cgatggctag ctatgcttac taataatcag cttagaagac 5821 aagtaattag ggaagcacag atctggatat ggaaacataa gggagctgca gttagaagaa 5881 attgtggttg caggctatgt aaccccggct ggggaagcca agtaagaaat gttgaactgt 5941 gataagtctg tctaggatga ccagcaaaga aagtaagcca agcagaacaa cgtggagagg 6001 catggagccc ccactccgag aaacatggaa tcaagtatta caggagctag taaaaagaca 6061 acaacaggag gaagaagaac aacagggact ggtatcaggt aagaaaaaat catgggtaag 6121 tattgacctc ctggggacag aaggaaaaga tattaagaag gtaaacatat gggaaccatg 6181 tgaaaagtgg tttgcacagg tgatatgggg ggtattgtgg gtgctgcaaa ttgtgttgtg 6241 gggatgtctc atgtgggaaa tgagaaaagg aaaccagtgt caagcagaag aagtgatagc 6301 attggtgagt gatcctggag gatttcagag ggtgcaacac gtagaaacag tgcccgtgac 6361 ctgtgtgaca aaaaatttca ctcaatgggg atgtcaaccc gagggggcct atccagatcc 6421 tgaactagag tatagaaata tatctaggga aatcttagag gaagtatata aacaagactg 6481 gccctggaat acttatcatt ggcctttatg gcaaatggaa aatatgaggc aatggatgaa 6541 agaaaatgaa aaggagtata aggaaagaac aaacaaaacg aaggaagata tagatgatct 6601 ggtagcagga agaataaggg gaagattttg tgtgccatat ccctatgctt tactacgatg 6661 tgaggaatgg tgttggtacc ctgaatctat taatcaggaa acaggacatg ctgaaaaaat 6721 aaaaataaac tgcacaaaag caaaagcagt ttcttgtaca gaaaaaatgc ccttagcagc 6781 agtccagcgg gtatattggg aaaaagagga tgaagaaagc atgaagtttt tgaatataaa 6841 agcctgtaat atatcattga ggtgtcaaga tgaaggaaag agtccgggag gatgtgtaca 6901 aggatacccc attccaaagg gagcagaaat aataccagaa gctatgaaat acctcagggg 6961 aaagaaaagt cgatatggag ggatcaagga taaaaatggg gaattaaaat tacctctctc 7021 tgtaagggtg tgggtaagga tggctaatct gtcaggatgg gtgaatggaa cgcctcctta 7081 ctggagtgca agggttaatg ggagtacagg gataaatgga acaaggtggt atggagtagg 7141 aacactacat cacttagggt ataacattag cagtaaccca gagagaggga tatgtgactt 7201 tacaggagaa ctttggatag ggggtgacaa attcccatat tattataagc cctcatggaa 7261 ttgttcacaa aattggacag gtcacccagt atggcaagta tttagatact tggatatgac 7321 agaacatatg acaagcagat gtatacaaag acctgaaaga cataatataa cagtaggaaa 7381 tggaacaata acggggaatt gtagtgtaac aaattgggat ggatgtaact gtacaaggtc 7441 aggaaatcat ttgtataaca gcacaagcgg aggactgtta gtaatcatat gcaggcaaaa 7501 tagcaccata acaggaataa tgggaacgaa cactaattgg acaacaatgt ggaacatcta 7561 ccaaaattgc tcaaaatgta acaacagtag cctagacaga acaggtaatg ggaccttggg 7621 aacagtgaac gaccttaagt gtagcttacc acacagaaat gagagtaaca agtggacatg 7681 tgcggcgaga aggaagggga gccgaagaga ctcattgtat atagctggaa gagacttctg 7741 gggcagagta aaagcaaaat acagttgtga gagtaattta gggggtctag atagtatgat 7801 gcatcagcaa atgttactgc aacgatacca agtaataaga gtaagagctt acacatatgg 7861 tgttgtagaa atgccacaat cgtatatgga ggcacaaggg gaaaacagga ggtcaagaag 7921 gaacctccaa aggaagaaaa gagggatagg cttggttatt gtgctggcca tcatggcaat 7981 aatcgctgct gcaggagctg gtctcggtgt cgcaaacgcc gtgcagcaat cctataccag 8041 gacggctgtc cagtctcttg ctaacgcaac tgctgcccag caggaagtgt tagaagcatc 8101 gtatgccatg gtacagcata tagccaaagg aataagaatc ctagaggcaa gagtggctag 8161 ggtggaagcc ctggtagatc gaatgatggt ataccatgaa ttggattgct ggcattatca 8221 acactactgt gtaacctcaa caagaagtga agtagccaat tatgtaaact ggacaagatt 8281 taaagataac tgtacctggc aacagtggga agaagaaata gaacaacacg agggaaactt 8341 gagtctatta ctcagagaag cagcattaca agtacacata gctcaaagag atgctaggag 8401 aatcccagat gcttggaaag caatacaaga agcatttaac tggtcctctt ggttctcgtg 8461 gctcaaatat ataccctgga ttatcatggg aattgtagga ttaatatgtt ttagaatact 8521 aatgtgtgtg atatcaatgt gtttgcaggc ttacaagcaa gtaaagcaga tcagatatac 8581 acaggtaaca gtggtgatag aagcaccggt ggaattggag gaaaaacaaa aaagaaacgg 8641 ggatggtaca aatggctgcg caagcttaga gcgcgagaga agaacatccc atcgcagttt 8701 tatccagata tggagagcaa catggtgggc atggaaaacc tcaccttgga gacacagctg 8761 gaggacaatg ccctatataa ccttgctacc catgttggtg atatggcagt ggatggaaga 8821 gaatggatgg aatggagaga atcagcacaa aaagaaaaaa gaaagggtgg actgtcagga 8881 cagagaacaa atgcctaccc tggaaaatga ctatgtagag ttataggaag gtcatgtcac 8941 tgttaccaga aatcatagtc aggatgacac agcaaatgta accggttacc agaaatcata 9001 gtcaggatga cacagcaaat gtaaccgcaa gttctgcttt tttgcgctaa gtcatgtagc 9061 agctgatgct tgagtcataa ccgcagatgt aaacaagttg cctatataag ccgcttgcta 9121 gctggggaaa agcagagtgc tttggagagc tcgaaggaaa gagtctccgg gcctctcctg 9181 cctgcctgaa aagctcaata aaggagttgg ctgatatctg a //