Path: utzoo!utgpu!news-server.csri.toronto.edu!rpi!crdgw1!uakari.primate.wisc.edu!caen!sol.ctr.columbia.edu!ucselx!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Hepatitis A virus polyprotein RNA, complete cds. Message-ID: Date: 29 Mar 91 13:06:02 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 191 Approved: lear@genbank.bio.net Checksum: 48455 12 LOCUS HPA43C 7419 bp ss-RNA VRL 29-MAR-1991 DEFINITION Hepatitis A virus polyprotein RNA, complete cds. ACCESSION M59809 KEYWORDS hepatitis A; polyprotein. SOURCE Hepatitis A virus (strain HM175, isolate 43c), cDNA to genomic RNA. ORGANISM Hepatitis A virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 1 to 7419) AUTHORS Lemon,S.M., Murphy,P.C., Shields,P.A., Ping,L.-H., Feinstone,S.M., Cromeans,T. and Jansen,R.W. TITLE Antigenic and genetic variation in cytopathic Hepatitis A virus variants during persistent infection: Evidence for genetic recombination JOURNAL Unpublished (1990) STANDARD full staff_entry FEATURES Location/Qualifiers CDS 718..7398 /product="viral protein" /codon_start=718 mat_peptide 718..786 /product="viral protein" /label=vp4 /codon_start=718 mat_peptide 787..1452 /product="viral protein" /label=vp2 /codon_start=787 mat_peptide 1453..2190 /product="viral protein" /label=vp3 /codon_start=1453 mat_peptide 2191..3090 /product="viral protein" /label=vp1 /codon_start=2191 mat_peptide 3091..3657 /product="viral protein" /label=2A /codon_start=3091 mat_peptide 3658..3978 /product="viral protein" /label=2B /codon_start=3658 mat_peptide 3979..4983 /product="viral protein" /label=2C /codon_start=3979 mat_peptide 4984..5202 /product="viral protein" /label=3A /codon_start=4984 mat_peptide 5203..5271 /product="viral protein" /label=3B /codon_start=5203 mat_peptide 5272..5928 /product="viral protein" /label=3C /codon_start=5272 mat_peptide 5929..7395 /product="viral protein" /label=3D /codon_start=5929 BASE COUNT 2162 a 1204 c 1626 g 2427 t ORIGIN 1 gtccctcttg gaagtccatg gtgaggggac ttgatacctc accgccgttt gcctaggcta 61 taggctaaat tttccctttc ccttttccct ttcctattcc ctttgttttg cttgtaaata 121 ttgatttgta aatattgatt cctgcaggtt cagggttctt aaatctgttt ctctataaga 181 acactcattt cacgctttct gtcttctttc ttccagggct ctccccttgc cctaggctct 241 ggccgttgcg cccggcgggg tcaactccat gattagcatg gagctgtagg agtctaaatt 301 ggggacacag atgtttggaa cgtcaccttg cagtgttaac ttggctttca tgaatctctt 361 tgatcttcca caaggggtag gctacgggtg aaacctctta ggctaatact tctatgaaga 421 gatgccttgg atagggtaac agcggcggat attggtgagt tgttaagaca aaaaccattc 481 aacgccggag gactgactct catccagtgg atgcattgag tggattgact gtcggggctg 541 tctttaggct taattccaga cctctctgtg cttggggcaa acatcatttg gccttaaatg 601 ggattctgtg agaggggatc cctccattgc cagctggact gttctttggg gccttatgtg 661 gtgtttgccg ctgaggtact caggggcatt taggtttttc ctcattctta aataataatg 721 aacatgtcta gacaaggtat tttccagact gttgggagtg gtcttgacca catcctgtct 781 ttggcagaca ttgaggaaga gcaaatgatt caatcagttg ataggactgc agtgactggt 841 gcttcttatt ttacttctgt ggatcaatct tcagttcata cagctgaggt tggatcacac 901 caggttgaac ctttgagaac ctctgttgat aaacccggtt caaagaggac tcagggagag 961 aaatttttct tgattcattc tgcagattgg cttactacac atgctctttt ccatgaagtt 1021 gcaaaattgg atgtggtgaa attattatac aatgagcagt ttgctgttca agggttgttg 1081 agataccata catatgcaag atttggcatt gaaattcaag ttcagataaa ccctacacct 1141 ttccaacagg ggggattgat ctgtgctatg gttcctggtg accagagcta tggttctata 1201 gcatcattga ctgtttatcc tcatggtttg ttaaattgca atattaacaa tgtggttaga 1261 ataaaggttc catttattta cacaagaggt gcttaccact ttaaagatcc acaataccca 1321 gtttgggaat tgacaattag agtttggtca gaattaaata ttgggacagg aacttcagct 1381 tatacttcac tcaatgtttt agctagattt acagatttgg agttgcatgg attaactcct 1441 ctttctacac aaatgatgag aaatgaattt agggtcagta ctactgagaa tgtggtgaat 1501 ctgtcaaatt atgaagatgc aagagcaaag atgtcttttg ctttggatca ggaagattgg 1561 aaatctgatc cgtcccaggg tggtgggatc aaaattactc attttactac ttggacatct 1621 attccaactt tggctgctca gtttccattt aatgcttcag cctcagttgg tcaacaaatt 1681 aaagttattc cagttgaccc atattttttc caaatgacaa atacgaatcc tgaccaaaaa 1741 tgtataactg ctttggcttc tatttgtcag atgttttgtt tttggagagg agatcttgtc 1801 tttgattttc aagtttttcc caccaaatat cattcaggta gattactgtt ttgttttgtt 1861 cctggcaatg agctaataga tgtttctgga atcacattaa agcaagcaac tactgctcct 1921 tgtgcagtaa tggatattac aggagtgcag tcaactttga gatttcgtgt tccctggatt 1981 tctgacactc cttacagagt gaacaggtat acaaagtcag cacatcagaa aggtgagtac 2041 actgccattg ggaagcttat tgtgtattgt tataacagat tgacctctcc ttctaacgtt 2101 gcttcccatg tcagagtgaa tgtttatctt tcagcaatta acttggaatg ttttgctcct 2161 ctttatcatg ctatggatgt tactacacaa gttggagatg attctggagg tttttcaaca 2221 acagtttcta cagaacagaa tgttccagat ccccaagttg gtataacaac catgaaagat 2281 ttgaaaggaa aagctaacag agggaaaatg gatgtttcag gagtacaagc acctgtggga 2341 gctatcacaa caattgagga tccagtttta gcaaagaaag tacctgagac atttcctgaa 2401 ttgaaacctg gagaatccag acatacatca gatcatatgt ccatctacaa gtttatggga 2461 aggtctcatt tcttgtgcac ttttacattc aattcaaata ataaagagta cacatttcct 2521 ataaccttgt cttcaacctc taatcctcct catggtttgc catcaacact gaggtggttt 2581 ttcaacttgt ttcagttgta tagagggcct ttagatctga caattattat tacaggagca 2641 actgatgtag atggcatggc ctggttcact ccagtaggtc ttgccgttga tactccttgg 2701 gtagagaagg agtcagcttt gtctattgac tacaaaactg ctcttggagc tgtcagattt 2761 aacacaagga gaacagggag cattcagatt agattaccat ggtattctta tttatatgct 2821 gtgtctggag cactggatgg tttgggtgac aagacagatt ctacatttgg attggtttct 2881 attcagattg caaattacaa tcattctgat gaatacttgt cttttagttg ttatttgtct 2941 gtcacagaac aatcagagtt ttattttccc agagctccat tgaactcaaa tgccatgtta 3001 tccactgaat caatggtgag cagaattgca gctggagact tggagtcatc agtggatgat 3061 cctagatcag aggaagataa aagatttgag agtcatatag aatgcaggaa gccatataaa 3121 gaactgagat tagaagttgg gaaacaaaga ctcaagtatg ctcaggaaga attgtcaaat 3181 gaagtacttc caccccctag gaaaatgaag ggactgtttt cacaagccaa catttctctt 3241 ttttatactg aggagcatga aatgatgaag ttttcctgga gaggtgtgac tgctgatact 3301 agagctttaa ggaggtttgg attctctttg gccgcaggca gaagtgtgtg gactcttgaa 3361 atggatgctg gggttcttac tgggagactg attagattga atgatgagaa atggacagaa 3421 atgaaggatg acaagattgt ttcattgatt gaaaagttta caagtaacaa atattggtcc 3481 aaagtgaatt tcccacatgg gatgttggat cttgaagaaa ttgctgccaa ttctaaggat 3541 tttcctaaca tgtctgaaac ggatttgtgt ttcttgctgc attggttaaa tccaaagaaa 3601 attaatttag cagatagaat gcttggattg tctggagttc aggaaattaa agaacaaggt 3661 gttggattaa tagcagagtg tagaactttc ttacattcta ttgctggaac tttaaaatct 3721 atgatgtttg gatttcatca ttctgtgact gttgaaatta taaacactgt gctctgtttt 3781 gttaagagtg gaattttgct ttatgtaata caacaattga atcaggatga acattctcac 3841 ataattggtc tgttgagagt catgaattat gtagatattg gttgttcagt tatttcatgt 3901 ggcaaagttt tttccaaaat gctggaaaca gtctttaatt ggcaaatgga ctccagaatg 3961 atggagttaa ggactcagag tttttccaac tggttaagag atatttgttc tgggatcacc 4021 atttttaaaa acttcaagga tggaatttgt tggctttata caaaattaaa ggacttttat 4081 gaagtgaatt atggcaagaa gaaggacatt ttaaatattc ttaaagataa ccaacaaaaa 4141 atagagaaag ccattgagga agccgataaa ttttgcattt tgcaaatcca agatgtggaa 4201 aaatctgaac agtatcagaa aggggttgac ttgatacaaa aattgagaac tgtttattca 4261 atggctcagg ttgatccaaa tttaatggtt catttgtcac ctttgagaga ttgtatagca 4321 agagttcatc agaaacttaa aaaccttgga tttataaatc aggcaatggt aacgagatgt 4381 gagccagttg tttgttattt acatggcaaa agagggggag gaaagagctt aacatcaatt 4441 gcattggcaa ccaaaatttg taaacattat ggtgttgagc ctgaaaagaa tatctatact 4501 aaacctgtgg cttcagatta ctgggatgga tatagtggac aattagtttg catcattgat 4561 gatattggcc aaaacacaac agatgaggac tggtcagatt tttgtcagtt agtgtcagga 4621 tgtccaatga gattaaacat ggcctctctt gaggagaagg gtaggcattt ttcttctcct 4681 tttataatag caacttcaaa ttggtcaaat ccaagtccaa aaacagttta tgttaaggaa 4741 gcaattgacc gcagactcca tttcaaggtt gaagttaaac ctgcttcatt tttcaaaaat 4801 cctcacaatg atatgttgaa tgttaattta gctaaaacaa atgatgcaat caaagatatg 4861 tcttgtgttg atttgataat ggatggacat aatgtttcat tgatggattt gctcagttct 4921 ttagtcatga cagttgatat tagaaaacaa aacatgactg aattcatgga gttgtggtct 4981 cagggaattt cagatgataa tgatagtgca gtagctgagt ttttccagtc ttttccatct 5041 ggtgaaccat cgaactctaa attatctggc tttttccaat ctgttactaa tcacaagtgg 5101 gttgctgtgg gagctgcagt tggcattctt ggagtgctcg ttggaggatg ggttgtgtat 5161 aagcatttct cccacaaaga ggaagaacca atcccagctg aaggggtata tcatggtgta 5221 actaagccca agcatgtgat taaattagat gcagatccag tagaatctca gtcaactttg 5281 gaagtagcag gactggttag gaagaacttg gttcagtttg gagttggaga gaagaatgga 5341 tgtgtgagat gggttatgaa tgccttggga gtgaaagatg attggctgct tgtgccttcc 5401 catgcttata aatttgagaa agattatgaa atgatggagt tttattttaa tagaggtgga 5461 acttactatt caatttcagc tggtaatgtt gttattcaat ctttggatgt gggattccag 5521 gatgttgttc tgatgaaggt tcctacaatt cctaagttta gagatattac tcagcatttt 5581 attaagaaag gggatgtgcc tagagctttg aatcgcctgg caacattagt gacaactgta 5641 aatggaaccc ctatgttaat ttctgagggc ccactaaaga tggaagagaa agctacttat 5701 gttcataaga aaaatgatgg tacaacagtt gatttagctg tggatcaggc atggagagga 5761 aaaggcgaag gtcttcctgg aatgtgtggt ggggccttgg tttcatcgaa tcaatctata 5821 cagaatgcaa tcttgggcat ccatgttgct ggaggaaatt caattcttgt tgcaaaattg 5881 gttactcaag aaatgttcca aaatattgat aagaaaattg aaagtcagag aattatgaaa 5941 gtggagttta ctcagtgttc aatgaatgtg gtctccaaaa cgctttttag aaagagtccc 6001 atttatcatc acattgataa aaccatgatt aattttcctg cagctatgcc cttttctaaa 6061 gctgaaattg atccaatggc tgtgatgtta tctaagtatt cattacctat tgtagaagaa 6121 ccagagggtt ataaagaggc ttcaattttt tatcaaaata aaatagtggg taagactcag 6181 ttagttgatg attttctaga tcttgatatg gccattacag gggccccagg aattgatgct 6241 atcaacatgg attcatctcc tggatttcct tatgtccagg agaagttgac caaaagagat 6301 ttaatttggt tggatgaaaa tggtttattg ctgggagttc atccaagatt ggctcagaga 6361 atcttattca atactgtcat gatggaaaat tgttctgatt tggatgttgt ttttacaacc 6421 tgtccaaaag atgaattgag accattagag aaagtgttgg aatcaaaaac aagagctatt 6481 gatgcttgtc ctctggatta cacaattttg tgccgaatgt attggggtcc agctattagt 6541 tattttcatt tgaatccagg tttccataca ggtgttgcta ttggcataga tcctgataaa 6601 cagtgggatg aactatttaa aacaatgata agattcggag atgttggtct tgatttagat 6661 ttctctgctt ttgatgctag tcttagtcca tttatgatta gagaagcagg tagaatcatg 6721 agtgaactat ctggaactcc atcccatttt ggcacagctc tcatcaatac tatcatttat 6781 tccaagcatt tgctgtataa ctgttgctac catgtctgtg gttcaatgcc ctctgggtct 6841 ccttgtacag ctttgctaaa ttcaattatt aataatgtca atttgtatta tgtgttttcc 6901 aagatatttg gaaagtctcc agttttcttt tgtcaggctt tgaagattct ctgttatgga 6961 gatgatgttt taatagtttt ctctcgagat gttcagattg ataatcttga tttgattgga 7021 caaaaaattg tagatgagtt taagaaactt ggcatgacag ctacttctgc tgacaagaat 7081 gtacctcagc tgaaaccagt ttcggaattg acttttctca aaagatcttt caatttggta 7141 gaggatagaa ttagacctgc aatttcggaa aaaacaattt ggtctttaat agcatggcag 7201 agaagcaacg ctgagtttga gcagaattta gagaatgctc agtggtttgc ctttatgcat 7261 ggctatgagt tttatcagaa attctattat tttgttcagt cctgtttgga gaaagagatg 7321 atagaataca gacttaaatc ttatgattgg tggagaatga gattttatga ccagtgtttc 7381 atttgtgacc tttcatgatt tgtttaaatg aactttctt //