Path: utzoo!utgpu!news-server.csri.toronto.edu!rpi!crdgw1!uakari.primate.wisc.edu!caen!sol.ctr.columbia.edu!ucselx!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Hepatitis A virus polyprotein RNA, complete cds. Message-ID: Date: 29 Mar 91 13:06:05 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 191 Approved: lear@genbank.bio.net Checksum: 54192 12 LOCUS HPA24A 7436 bp ss-RNA VRL 29-MAR-1991 DEFINITION Hepatitis A virus polyprotein RNA, complete cds. ACCESSION M59810 KEYWORDS hepatitis A; polyprotein. SOURCE Hepatitis A virus (strain HM175, isolate 24a), cDNA to genomic RNA. ORGANISM Hepatitis A virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Picornaviridae; Enterovirus. REFERENCE 1 (bases 1 to 7436) AUTHORS Lemon,S.M., Murphy,P.C., Shields,P.A., Ping,L.-H., Feinstone,S.M., Cromeans,T. and Jansen,R.W. TITLE Antigenic and genetic variation in cytopathic Hepatitis A virus variants during persistent infection: Evidence for genetic recombination JOURNAL Unpublished (1990) STANDARD full staff_entry FEATURES Location/Qualifiers CDS 719..7399 /product="viral protein" /codon_start=719 mat_peptide 719..787 /product="viral protein" /label=vp4 /codon_start=719 mat_peptide 788..1453 /product="viral protein" /label=vp2 /codon_start=788 mat_peptide 1454..2191 /product="viral protein" /label=vp3 /codon_start=1454 mat_peptide 2192..3091 /product="viral protein" /label=vp1 /codon_start=2192 mat_peptide 3092..3658 /product="viral protein" /label=2A /codon_start=3092 mat_peptide 3659..3979 /product="viral protein" /label=2B /codon_start=3659 mat_peptide 3980..4984 /product="viral protein" /label=2C /codon_start=3980 mat_peptide 4985..5203 /product="viral protein" /label=3A /codon_start=4985 mat_peptide 5204..5272 /product="viral protein" /label=3B /codon_start=5204 mat_peptide 5273..5929 /product="viral protein" /label=3C /codon_start=5273 mat_peptide 5930..7396 /product="viral protein" /label=3D /codon_start=5930 BASE COUNT 2167 a 1202 c 1632 g 2435 t ORIGIN 1 gtccctcttg gaagtccatg gtgaggggac ttgatacctc accgccgttt gcctaggcta 61 taggctaaat tttccctttc ccttttctcc tttcctattc cctttgtttt gcttgtaaat 121 attgatttgt aaatattgat tcctgcaggt tcagggttct taaatctgtt tctctataag 181 aacactcatt tcacgctttc tgtcttcttt cttccagggc tctccccttg ccctaggctc 241 tggccgttgc gcccggcggg gtcaactcca tgattagcat ggagctgtag gagtctaaat 301 tggggacaca gatgtttgga acgtcacctt gcagtgttaa cttggctttc atgaatctct 361 ttgatcttcc acaaggggta ggctacgggt gaaacctctt aggctaatac ttctatgaag 421 agatgccttg gatagggtaa cagcggcgga tattggtgag ttgttaagac aaaaaccatt 481 caacgccgga ggactgactc tcatccagtg gatgcattga gtggattgac tgtcggggct 541 gtctttaggc ttaattccag acctctctgt gcttggggca aacatcattt ggccttaaat 601 gggattctgt gagaggggat ccctccattg ccagctggac tgttctttgg ggccttatgt 661 ggtgtttgcc gctgaggtac tcaggggcat ttaggttttt cctcattctt aaataataat 721 gaacatgtct agacaaggta ttttccagac tgttgggagt ggtcttgacc acatcctgtc 781 tttggcagac attgaggaag agcaaatgat tcaatcagtt gataggactg cagtgactgg 841 tgcttcttat tttacttctg tggatcaatc ttcagttcat acagctgagg ttggatcaca 901 ccaggttgaa cctttgagaa cctctgttga taaacccggt tcaaagagga ctcagggaga 961 gaaatttttc ctgattcatt ctgcagattg gcttactaca catgctcttt tccatgaagt 1021 tgcaaaattg gatgtggtga aattattgta caatgagcag tttgctgttc aagggttgtt 1081 gagataccat acatatgcaa gatttggcat tgaaattcaa gttcagataa accctacacc 1141 tttccaacag gggggattga tctgtgctat ggttcctggt gaccagagct atggttctat 1201 agcatcattg actgtttatc ctcatggttt gttaaattgc aatattaaca atgtggttag 1261 aataaaggtt ccatttattt acacaagagg tgcttaccac tttaaagatc cacaataccc 1321 agtttgggaa ttgacaatta gagtttggtc agaattaaat attgggacag gaacttcagc 1381 ttatacttca ctcaatgttt tagctagatt tacagatttg gagttgcatg gattaactcc 1441 tctttctaca caaatgatga gaaatgaatt tagggtcagt actactgaga atgtggtgaa 1501 tctgtcaaat tatgaagatg caagagcaaa gatgtctttt gctttggatc aggaagattg 1561 gaaatctgat ccgtcccagg gtggtgggat caaaattact cattttacta cttggacatc 1621 tattccaact ttggctgctc agtttccatt taatgcttca gcctcagttg gtcaacaaat 1681 taaagttatt ccagttgacc catatttttt ccaaatgaca aatacgaatc ctgaccaaaa 1741 atgtataact gctttggctt ctatttgtca gatgttttgt ttttggagag gagatcttgt 1801 ctttgatttt caagtttttc ccaccaaata tcattcaggt agattactgt tttgttttgt 1861 tcctggcaat gagctaatag atgtttctgg aatcacatta aagcaagcaa ctactgctcc 1921 ttgtgcagta atggatatta caggagtgca gtcaactttg agatttcgtg ttccctggat 1981 ttctgacact ccttacagag tgaacaggta tacaaagtcg gcacatcaga aaggtgagta 2041 cactgccatt gggaagctta ttgtgtattg ttataacaga ttgacctctc cttctaacgt 2101 tgcttcccat gtcagagtga atgtttatct ttcagcaatt aacttggaat gttttgctcc 2161 tctttatcat gctatggatg ttactacaca agttggagat gattctggag gtttttcaac 2221 aacagtttct acagaacaga atgttccaga tccccaagtt ggtataacaa ccatgaaaga 2281 tttgaaagga aaagctaaca gagggaaaat ggatgtttca ggagtacaag cacctgtggg 2341 agctatcaca acaattgagg atccagtttt agcaaagaaa gtacctgaga catttcctga 2401 attgaaacct ggagaatcca gacatacatc agatcatatg tccatctaca agtttatggg 2461 aaggtctcat ttcttgtgca cttttacatt caattcaaat aataaagagt acacatttcc 2521 tataaccttg tcttcaacct ctaatcctcc tcatggtttg ccatcaacac tgaggtggtt 2581 tttcaacttg tttcagttgt atagagggcc tttagatctg acaattattg ttacaggagc 2641 aactgatgta gatggcatgg cctggttcac tccagtaggt cttgccgttg atactccttg 2701 ggtagagaag gagtcagctt tgtctattga ctacaaaact gctcttggag ctgtcagatt 2761 taatacaagg agaacaggga gcattcagat tagattacca tggtattctt atttatatgc 2821 tgtgtctgga gcactggatg gtttgggaga caagacagat tctacatttg gattggtttc 2881 tattcagatt gcaaattaca atcattctga tgagtacttg tcttttagtt gttatttgtc 2941 tgtcacagaa caatcagagt tttattttcc cagagctcca ttgaactcaa atgccatgtt 3001 atccactgaa tcaatggtga gcagaattgc agctggagac ttggagtcat cagtggatga 3061 tcctagatca gaggaagata aaagatttga gagtcatata gaatgcagga agccatataa 3121 agaactgaga ttagaagttg ggaaacaaag actcaagtat gctcaggaag aattgtcaaa 3181 tgaagtactt ccacccccta ggaaaatgaa gggactgttt tcacaagcca atatttctct 3241 tttttatact gaggagcatg aaatgatgaa gttttcctgg agaggtgtga ctgctgatac 3301 tagagcttta aggaggtttg gattctcttt ggccgcaggc agaagtgtgt ggactcttga 3361 aatggatgct ggggttctta ctgggagact gattagattg aatgatgaga aatggacaga 3421 aatgaaggat gacaagattg tttcattgat tgaaaagttt acaagtaaca aatattggtc 3481 caaagtgaat ttcccacatg ggatgttgga tcttgaagaa attgctgcca attctaagga 3541 gtttcctaac atgtctgaaa cggatttgtg tttcttgctg cattggttaa atccaaagaa 3601 aattaattta gcagatagaa tgcttggatt gtctggagtt caggaaatta aagaacaagg 3661 tgttggatta atagcagagt gtagaacttt cttacattct attgctggaa ctttaaaatc 3721 tatgatgttt ggatttcatc attctgtgac tgttgaaatt ataaacactg tgctctgttt 3781 tgttaagagt ggaattttgc tttatgtaat acaacaattg aatcaggatg aacattctca 3841 cataattggt ctgttgagag tcatgaatta tgtagatatt ggttgttcag ttatttcatg 3901 tggcaaagtt ttttccaaaa tgctggaaac agtctttaat tggcaaatgg actccagaat 3961 gatggagtta aggactcaga gtttttccaa ctggttaaga gatatttgtt ctgggatcac 4021 catttttaaa aacttcaagg atggaatttg ttggctttat acaaaattaa aggactttta 4081 tgaagtgaat tatggcaaga agaaggacat tttaaatatt cttaaagata accaacaaaa 4141 aatagagaaa gccattgagg aagccgataa attttgcatt ttgcaaatcc aagatgtgga 4201 aaaatctgaa cagtatcaga aaggggttga cttgatacaa aaattgagaa ctgtttattc 4261 aatggctcag gttgatccaa atttaatggt tcatttgtca cctttgagag attgtatagc 4321 aagagttcat cagaaactta aaaaccttgg atttataaat caggcaatgg taacgagatg 4381 tgagccagtt gtttgttatt tacatggcaa aagaggggga ggaaagagct taacatcaat 4441 tgcattggca accaaaattt gtaaacatta tggtgttgag cctgaaaaga atatctatac 4501 taaacctgtg gcttcagatt actgggatgg atatagtgga caattagttt gcatcattga 4561 tgatattggc caaaacacaa cagatgagga ctggtcagat ttttgtcagt tagtgtcagg 4621 atgtccaatg agattaaaca tggcctctct tgaggagaag ggtaggcatt tttcttctcc 4681 ttttataata gcaacttcaa attggtcaaa tccaagtcca aaaacagttt atgttaagga 4741 agcaattgac cgcagactcc atttcaaggt tgaagttaaa cctgcttcat ttttcaaaaa 4801 tcctcacaat gatatgttga atgttaattt agctaaaaca aatgatgcaa tcaaagatat 4861 gtcttgtgtt gatttgataa tggatggaca taatgtttca ttgatggatt tgctcagttc 4921 tttagtcatg acagttgata ttagaaaaca aaacatgact gaattcatgg agttgtggtc 4981 tcagggaatt tcagatgata atgatagtgc agtagctgag tttttccagt cttttccatc 5041 tggtgaacca tcgaactcta aattatctgg ctttttccaa tctgttacta atcacaagtg 5101 ggttgctgtg ggagctgcag ttggcattct tggagtgctc gttggaggat gggttgtgta 5161 taagcatttc tcccacaaag aggaagaacc aatcccagct gaaggggtat atcatggtgt 5221 aactaagccc aagcatgtga ttaaattaga tgcagatcca gtagaatctc agtcaacttt 5281 ggaaatagca ggactggtta ggaagaactt ggttcagttt ggagttggag agaagaatgg 5341 atgtgtgaga tgggttatga atgccttggg agtgaaagat gattggctgc ttgtgccttc 5401 ccatgcttat aaatttgaga aagattatga aatgatggag ttttatttta atagaggtgg 5461 aacttactat tcaatttcag ctggtaatgt tgttattcaa tctttggatg tgggattcca 5521 ggatgttgtt ctgatgaagg ttcctacaat tcctaagttt agagatatta ctgagcattt 5581 tattaagaaa ggggatgtgc ctagagcttt gaatcgcctg gcaacattag tgacaactgt 5641 aaatggaacc cctatgttaa tttctgaggg cccactaaag atggaagaga aagctactta 5701 tgttcataag aaaaatgatg gtacaacagt tgatttaact gtggatcagg catggagagg 5761 aaaaggcgaa ggtcttcctg gaatgtgtgg tggggccttg gtttcatcga atcaatctat 5821 acagaatgca atcttgggca tccatgttgc tggaggaaat tcaattcttg ttgcaaaatt 5881 ggttactcaa gaaatgttcc aaaatattga taagaaaatt gaaagtcaga gaattatgaa 5941 agtggagttt actcagtgtt caatgaatgt ggtctccaaa acgcttttta gaaagagtcc 6001 catttatcat cacattgata aaaccatgat taattttcct gcagctatgc ccttctctaa 6061 agctgaaatt gatccaatgg ctgtgatgtt atctaagtat tcattaccta ttgtagaaga 6121 accagagggt tataaagagg cttcaatttt ttatcaaaat aaaatagtgg gtaagactca 6181 gttagttgat gattttctag atcttgatat ggccattaca ggggccccag gaattgatgc 6241 tatcaacatg gattcatctc ctggatttcc ttatgtccag gagaagttga ccaaaagaga 6301 tttaatttgg ttggatgaaa atggtttatt gctgggagtt catccaagat tggctcagag 6361 aatcttattc aatactgtca tgatggaaaa ttgttctgat ttggatgttg tttttacaac 6421 ctgtccaaaa gatgaattga gaccattaga gaaagtgttg gaatcaaaaa caagagctat 6481 tgatgcttgt cctctggatt acacaatttt gtgccgaatg tattggggtc cagctattag 6541 ttattttcat ttgaatccag gtttccatac aggtgttgct attggcatag atcctgataa 6601 acagtgggat gaactattta aaacaatgat aagattcgga gatgttggtc ttgatttaga 6661 tttctctgct tttgatgcta gtcttagtcc atttatgatt agagaagcag gtagaatcat 6721 gagtgaacta tctggaactc catcccattt tggcacagct cttatcaata ctatcattta 6781 ttccaagcat ttgttgtata actgttgcta ccatgtctgt ggttcaatgc cctctgggtc 6841 tccttgtaca gctttgctaa attcaattat taataatgtc aatttgtatt atgtgttttc 6901 caagatattt ggaaagtctc cagttttctt ttgtcaggct ttgaagattc tctgttatgg 6961 agatgatgtt ttaatagttt tctctcgaga tgttcagatt gataatcttg atttgattgg 7021 acaaaaaatt gtagatgagt ttaagaaact tggcatgaca gctacttctg ctgacaagaa 7081 tgtacctcag ctgaaaccag tttcggaatt gacttttctc aaaagatctt tcaatttggt 7141 agaggataga attagacctg caatttcgga aaaaacaatt tggtctttaa tagcatggca 7201 gagaagcaac gctgagtttg agcagaattt agaaaatgct cagtggtttg cctttatgca 7261 tggctatgag ttttatcaga aattctatta ttttgttcag tcctgtttgg agaaagagat 7321 gatagaatac agacttaaat cttatgattg gtggagaatg agattttatg accagtgttt 7381 catttgtgac ctttcatgat ttgtttaaat gaactttctt aaaatttctg aggttt //