Path: utzoo!utgpu!news-server.csri.toronto.edu!rpi!usc!samsung!news.cs.indiana.edu!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Bean golden mosaic virus (BGMV), DNA A, complete sequence. Message-ID: Date: 16 May 91 12:00:50 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 77 Approved: lear@genbank.bio.net Checksum: 35348 5 LOCUS MBGACG 2585 bp ss-DNA Circular VRL 16-MAY-1991 DEFINITION Bean golden mosaic virus (BGMV), DNA A, complete sequence. ACCESSION D00200 KEYWORDS DNA A; complete genome. SOURCE Bean golden mosaic virus DNA, clone pBGH1. ORGANISM Bean golden mosaic virus Viridae; ss-DNA nonenveloped viruses; Geminiviridae. REFERENCE 1 (bases 1 to 2585) AUTHORS Morinaga,T., Ikegami,M., Shimotohno,K. and Miura,K. TITLE Total nucleotide sequences of the infectious cloned DNAs of bean golden mosaic virus JOURNAL Microbiol. Immunol. 31, 147-154 (1987) STANDARD simple automatic COMMENT The genome of BGMV is composed of two single-stranded circular DNAs, A and B. Nucleotide sequences of DNAs A and B revealed the presence of 8 potential coding regions for proteins (ORF1,2 in A, ORF3~8 in B). ORFs 5,6,7, and 8 have not the TATA sequence or the AATAA sequence near the coding regions (see [1]). Authors of [1] originally named the major DNA component(shorter DNA) "DNA A" andthe minor one (longer DNA) "DNA B", although it is now more common to call the longer DNA as "DNA A" and the shorter one as "DNA B". FEATURES Location/Qualifiers CDS 510..1280 /note="ORF1 (putative)" /codon_start=510 CDS complement(1314..2195) /note="ORF2 (putative)" /codon_start=2195 BASE COUNT 761 a 438 c 511 g 875 t ORIGIN 5' end of the 205 base sequence common to both DNAs A and B. 1 tggcatattt gtaaatatgc gagtgtctcc aaatgagttt gcgagtgtct ccaattgagg 61 ctcctcaaac tctcgctatg caattggaga ctggagtaca atatatacta gaaccctcaa 121 tctcttgaat tatcacattc atacacgtgg cggccatccg atataatatt accggatggc 181 cgcccgcgcc cctttatatc cgtacgccgc atttcgattc cagaaatgcc cttcccacgc 241 tttatacacg gtattctata ccgttggata aagcttattg cactctatca ttgaattttg 301 aattattgtc attgcttttg tgtttcgata tttatggatg ggtctgacac attactgaca 361 ttgtacaatt cgaccaatca aaattcacga tagaagtcta gttaaatcgt ttattaatat 421 gagatcctta taagtaaaca tatttgataa agaaaaaacg atcatcgttt ttaatgtttg 481 tcttgttatt ttaggcaaac gatttaacaa tgtatgcgtc taaatataaa cgtggttcgt 541 ctaactatca acgacgaggt tattcacgtt atcaaggttt tcgacgaacg gcaattgtta 601 cacgacacga tggtaagcgt cgacaacatc aatctaataa gtctaatgaa gatcctaaga 661 tgttagtgca atgtatacgt gaaaatcagt ttggtcctga ttttgttatg tcccataata 721 ctgcaatatc gacgttcatt aattatcctc aacttggtaa gatcgaacct aatcgatgta 781 ggtcatatat caagttgaaa cgcttgcgtt tcaaagggac ggttaagatt gaacgcatgc 841 acactgatgt taacatggat ggattatctc ctaagattga aggcgtattt agtattgtta 901 ttgtggttga tcggaaacca catttaagtc ctagtggatg tctccataca tttgacgaat 961 tgtttggagc aaggataaat agccatggaa acctagctgt gatgccttct ttgaaagata 1021 gattttacat acggcatttg ttgaagcgtg ttttatctgt ggacaaagac acgactatga 1081 tagacgttga gggttctact ttgttgtcta ataagcgtta taatatgtgg tctacattta 1141 atgattttga tcatgactca tgtaatggtg tttatgctaa tattgctaag aacgctttat 1201 tagtctatta ttgctggatg tcagatatta tgtctaaggc atccacattt gtatcatatg 1261 atcttgatta tgttggttga acgtcgatct aacacaagaa taaatatacg tatttatttc 1321 aaagactttg gttgaacatg aatacaattg ttgttgatac attcatttac cgttgatcgc 1381 acaatttcgt ttaattgtgc aattgacagt gttatgtttg attgggctct ctgagccccg 1441 ataattgacg ctgaatctcc cgggtccaaa acactgcttc ccagtctgtt taaattcttg 1501 tatggatgta ttgcgctatc taagtccgag tccgcatcta aatgagatac accgattgta 1561 ctttttgagg cccatgactc acccggcttt aattcgattg ggccttgtag tccatacttt 1621 gataatgatg cggatcgtat caatttcctt tcccacttcc cgtagtcgac atgtgagaag 1681 tcgatgtcct tattggaaaa ctgctttgat aatattttta ctgttggtgc ccggaagggg 1741 atatctaccg aatgtttagc cgttgataat ttcagttttc ccttgaattt tgcgaaatgt 1801 gtcctttgat gaacgttggt gtctgaaact ctgtaataga gtttccatgg tatcgggtct 1861 tttaacgaga aaaatgacga agagaagtag tggagatcta tgttgcatct tatgggaaac 1921 gtccatgatg cttgtaatga ttcattgtct gtcatccttt tgtcgtgaat ctccactaca 1981 accgatcctg tcgcgtttat aggcacctgt tgcctatact caattacaca atgatcgatc 2041 ttcatacaac tgcgactgaa tcgtgctgat agttgagacg ctgtggaagg aaattgaagg 2101 attatctcag ttagatcatg agacaattga tattcgtctc tgtgagactc tatgtaatta 2161 aatgcatttg gaggatttgc taactgagaa tccatttaag aataaatggc cgcagcggaa 2221 ttgctcagag agataaggtc cactcaacta atggatagct aacaaataag aactatattt 2281 gtgaaacact catacaactg atatactgac aaggagaatg tgaaatagat tatagtgaga 2341 tagagaagca ttgttgtaac ttatatagac agttgtatgc gattaaagct ctttttgaaa 2401 aagaacatat tatttaagta atgatcatga aatatatatc ttatatatat atattgtatg 2461 aattggacat gattattgtt atactaaatg tcgtacgatg atcagaagtt aatatggatt 2521 atattgtttt ttatgaatta tttgaaggtt aataagcaaa acgaagccgt tttgaactta 2581 ttcgt //