Path: utzoo!utgpu!watserv1!watmath!att!news.cs.indiana.edu!bionet!root From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1) Message-ID: Date: 22 May 91 12:18:06 GMT Sender: root@genbank.bio.net Distribution: bionet Lines: 44 Approved: lear@genbank.bio.net Checksum: 62035 3 LOCUS HPCVEC1 576 bp ss-mRNA VRL 22-MAY-1991 DEFINITION Hepatitis C virus (HCV) genomic RNA for a putative envelope (E1) protein and E1-NS1/E2 protein junction (isolate EC1), partial cds. ACCESSION X53135 KEYWORDS NS1 protein; envelope protein; hepatitis; nonstructural protein. SOURCE Hepatitis C virus RNA. ORGANISM Hepatitis C virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Togaviridae incertae sedis. REFERENCE 1 (bases 1 to 576) AUTHORS Weiner,A.J. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 576) AUTHORS Weiner,A.J., Brauer,M.J., Rosenblatt,J., Richman,K.H., Tung,J., Crawford,K., Bonino,F., Saracco,G., Choo,Q.L., Houghton,M. and Han,J.H. TITLE Variable and hypervariable domains found in the regions of HCV corresponding to the flavivirius envelope and NS1 proteins and the pestivirus envelope glycoproteins JOURNAL Virology 180, 842-848 (1991) STANDARD full automatic COMMENT See X53131 to X53136 for the putative envelope sequence of other HCV isolates. From EMBL 26 entry HCVEC1; dated 27-MAR-1991. FEATURES Location/Qualifiers CDS <1..>576 /note="putative envelope protein E1 and E1-NS1/E2 junction" /codon_start=1 BASE COUNT 88 a 187 c 161 g 140 t ORIGIN 1 cgcaatttgg gtaaggtcat cgataccctt acgtgcggct tcgccgacct catggggtac 61 ataccgctcg tcggcgcccc tcttggaggc gctgccaggg ccctggcgca tggcgtccgg 121 gttctggaag acggcgtgaa ctatgcaaca gggaaccttc ctggttgctc tttctctatc 181 ttccttctgg ccttgctctc ttgcttgact gtgcccgctt cggcctacca agtgcgcaac 241 tcctcggggc tttaccatgt caccaatgat tgccctaact cgagcattgt gtacgaggcg 301 gccgatgcca tcctgcacac tccggggtgt gtcccttgcg ttcacgaggg caacgtctcg 361 aggtgttggg tggcgatgac ccccacggtg gccaccaggg acggcaaact ccccacaacg 421 cagcttcgac gtcacatcga tctgcttgtc gggagcgcca ccctctgctc ggccctctac 481 gtgggggacc tgtgcgggtc tgtcttcctt gtcggtcaac tgtttacctt ctctcccagg 541 cgccactgga cgacgcaagg ttgcaattgc tctatc //