Path: utzoo!utgpu!news-server.csri.toronto.edu!bonnie.concordia.ca!uunet!bionet!will From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Tomato black ring virus (TBRV-C) satellite RNA Message-ID: Date: 28 May 91 18:42:45 GMT Sender: will@genbank.bio.net Distribution: bionet Lines: 80 Approved: lear@genbank.bio.net Checksum: 11561 4 LOCUS TBRTBRVCS 1374 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Tomato black ring virus (TBRV-C) satellite RNA ACCESSION X05689 KEYWORDS satellite RNA. SOURCE Tomato black ring virus RNA. ORGANISM Tomato black ring virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Nepovirus. REFERENCE 1 (bases 1 to 1371) AUTHORS Hemmer,O., Meyer,M., Greif,C. and Fritsch,C. TITLE Comparison of the Nucleotide Sequences of Five Tomato Black Ring Virus Satellite RNAs JOURNAL J. Gen. Virol. 68, 1823-1833 (1987) STANDARD full staff_review REFERENCE 2 (bases 1 to 1374) AUTHORS Fritsch,C. JOURNAL Unpublished (1988) STANDARD full automatic COMMENT *source: strain=C serotype; Data kindly reviewed (15-FEB-1988) by Fritsch C. From EMBL entry NCTBRVCS; dated 06-JUL-1989. FEATURES Location/Qualifiers old_sequence 33..34 /note="au was a in [1]" /citation=[1] misc_feature 40..42 /note="initiation codon" old_sequence 96..97 /note="uu was u in [1]" /citation=[1] old_sequence 792..792 /note="a was u in [1]" /citation=[1] old_sequence 894..894 /note="c was a in [1]" /citation=[1] old_sequence 1167..1167 /note="u was c in [1]" /citation=[1] misc_feature 1297..1299 /note="in-phase termination codon" misc_feature 1312..1361 /note="pot.stem-loop structure" repeat_unit 1312..1330 /note="imp.inverted repeat A" misc_feature 1321..1323 /note="in-phase termination codon" old_sequence 1328..1329 /note="uu was u in [1]" /citation=[1] repeat_unit 1345..1361 /note="imp.inverted repeat A'" BASE COUNT 399 a 310 c 318 g 347 t ORIGIN 1 tttgaaaata attttgaaag tctctgacaa tcgtaactga tgcagaagac tatgactcga 61 cacttgtcgc gtaaccggaa gcctcatgag aaggtttccc atgttccgcg gcgagggcca 121 cgtacctacc aggatccatg cgatcctggt tggtgtgtgg taaactcttg taggagagtt 181 gcacctcaac caatacctac tagcggtagt ctgggccgca aacctctcaa tcccggctgt 241 ccgagcagga aatggacaga aaaaataatt gctgctccca agcacggctt ctatagtgca 301 aaagaccacg ggtactgggt tcccaaggtc aaagtacaga agaagtacaa ccctctccag 361 aaggttgtag gtggaggaaa atcctataag gatgttctca ccactcctgc tacaatccaa 421 attaaaccca cccctgaaag tattcttttg gctcaaaaga tacaaaattc aaccttcaaa 481 tctaggggaa aagtgacact gagccaagaa aagattccac tggtcaatcg cttccaagaa 541 ctattaattg aaaaagaact tatggaagaa attgaggaat cccaaccctt tgtggctaat 601 gatccaaggg cgcaacacct tatttgtaaa aaggtgccgc gtaaagttgg gcgacgagag 661 atcctcgtct gcccaattac taacgatgag tcacacctta atctcaagtc tgggattagg 721 gctgagattg tggattccat gggttcggtt gtgcatgcag agaaaatagc tgaatataac 781 cgaggccatg tagtgaagtc aatgcgtaag cgcattgtat acgagaggga aagtaagcca 841 attcctatca tcggatcatt tagtgatcgc gcaattagag tctcatgcga cgaccacacc 901 gatgaattgg cctctgcttc cagtgtccct tccgaatgga agccctctaa gaaccaacga 961 gctgtccctt gcttacttca aaatgagtct gggacagttg taagcacgaa gccggattgg 1021 tatacaccgg ttaaggtctg cacccacaag caatatatga aagtgcagcg tgttttcctc 1081 gacgccatga acataatgcg tgctcttcgt tttcacatag attcgaagac acttcgagaa 1141 acatgggtca agtgttggct acaggttcac aaaaaaaatg tggcattccc tggttggatg 1201 atagctccgc tattgtccgg cactgttcct tgtgaacagg agttcctttt acctcgtgta 1261 aatgagactc gggcgtttgt tacaacgtgc tatgcctaga gacctgtagg gtggagtttt 1321 taaaggtaca tgacctatta agattgtata ccttttctcc agagcaaatt tatc //