Path: utzoo!utgpu!news-server.csri.toronto.edu!bonnie.concordia.ca!uunet!bionet!will From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Tomato black ring virus (TBRV-E) satellite RNA Message-ID: Date: 28 May 91 18:42:48 GMT Sender: will@genbank.bio.net Distribution: bionet Lines: 71 Approved: lear@genbank.bio.net Checksum: 25482 4 LOCUS TBRTBRVES 1372 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Tomato black ring virus (TBRV-E) satellite RNA ACCESSION X05688 KEYWORDS satellite RNA. SOURCE Tomato black ring virus RNA. ORGANISM Tomato black ring virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Nepovirus. REFERENCE 1 (bases 1 to 1370) AUTHORS Hemmer,O., Meyer,M., Greif,C. and Fritsch,C. TITLE Comparison of the Nucleotide Sequences of Five Tomato Black Ring Virus Satellite RNAs JOURNAL J. Gen. Virol. 68, 1823-1833 (1987) STANDARD full automatic REFERENCE 2 (bases 1 to 1372) AUTHORS Fritsch,C. JOURNAL Unpublished (1988) STANDARD full automatic COMMENT *source: strain=E serotype; serotype G was also seqenced and was identical to serotype E except for a substitution at pos. 570 :u(in E) corr. g(in G); the authors cannot rule out an arteficial event and have chosen to to consider sat-RNAs E and G as identical Data kindly reviewed (15-FEB-1988) by Fritsch C. From EMBL entry NCTBRVES; dated 06-JUL-1989. FEATURES Location/Qualifiers misc_feature 40..42 /note="initiation codon" old_sequence 347..348 /note="au was a in [1]" /citation=[1] old_sequence 708..709 /note="aa was a in [1]" /citation=[1] misc_feature 1297..1299 /note="in-phase termination codon" misc_feature 1312..1359 /note="pot.stem-loop structure" repeat_unit 1312..1330 /note="imp.inverted repeat A" misc_feature 1321..1323 /note="in-phase termination codon" repeat_unit 1343..1359 /note="imp.inverted repeat A'" BASE COUNT 388 a 314 c 326 g 344 t ORIGIN 1 cttgaaaata attttgaaag tctctgacaa tcgtaacaga tgcagaagac tatgactcga 61 cacttgtcgc gtaaccggaa accacatgag aaggtttccc atgttccgcg gcgagggcca 121 cgtacctacc aggacccatg tgatcctggt tggtatgtgg taaactctcg taggggagtt 181 gcacctcaac caacacctac tagcggtagt ctgggccgca aaccttataa tcccggttgt 241 ccgagcagga aatggacaaa aaaaataatt gctgccccca agcacggctt ctacagtgca 301 aaagaccatg ggtactgggt tcccaaggtt caggcacaga agaagtataa cccccctcgg 361 aaggttgtag gtggaggaag atcttacaag gatgttcttt ccacccctgc gaaaatccaa 421 attaaaccca cccctgaaag tattcttttg gctcaaaaga tacaaaattc aaccttcaaa 481 tctaggggaa aagtgacact gagccaagaa aagattccac taatcaatcg cttccaagaa 541 ctattaattg aaaaagagct tatggaagat gttgaggaat cccaaccctt tgtggccaac 601 gattcaaggg cgcaacacct tttttgtaaa aaggtgttgc gtaaggttgg acggcgggag 661 atcctcgtct gtccaattac taatgaagag tcacacgtta atctcaaaac tgggattaag 721 gctcggattg tggattccat gggttcggtc gtgcatgaag agaatatacc tgcatataac 781 cgaggccatg ttgtgaaatc gatgcgcaag cgcatcgtgc atgagaggga gagcaagcca 841 attcctgtca tcggatcatt tagtgatcgc gcaattagag tcttatgcga cgatcacacc 901 gatgagttgg cctctgcttc cagtgtccct tccgaatgga agccctctaa gaaccaacga 961 gctgtccctt gcttacttca aaatgagtct gcgacagttg taagcgcgaa accggactgg 1021 tatgcaccgg ttaaggtctg cacccacaag caatatatga aggtgcagcg cgtcttcctt 1081 gacgccatgt tcatcatgcg tgctcttcgc ttccatatag atgcgaagat acttcgagaa 1141 acatgggtca agtgttggct acaggtccac agaaaaaatg tggcattccc tggttggatg 1201 atagctccgc tattatctgg cactgttcct tgtgaacagg agtttctttt acctcgtgta 1261 aatgagactc gggcgtttgc cacagtgtgc tatgcctaga gacctgtagg gttgagtttt 1321 taaaggtaca tgactttaag attgtatacc ctttctcaag agcaaattaa tc //