Path: utzoo!utgpu!news-server.csri.toronto.edu!bonnie.concordia.ca!uunet!stanford.edu!agate!bionet!will From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Brome mosaic virus (BMV) RNA1 sequence Message-ID: Date: 28 May 91 18:40:14 GMT Sender: will@genbank.bio.net Distribution: bionet Lines: 87 Approved: lear@genbank.bio.net Checksum: 06640 6 LOCUS MBRBMV1 3234 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Brome mosaic virus (BMV) RNA1 sequence ACCESSION X02380 KEYWORDS . SOURCE Brome mosaic virus RNA. ORGANISM Brome mosaic virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Bromovirus. REFERENCE 1 (bases 1 to 3234) AUTHORS Ahlquist,P., Dasgupta,R. and Kaesberg,P. TITLE Nucleotide sequence of the brome mosaic virus genome and its implications for viral replication JOURNAL J. Mol. Biol. 172, 369-383 (1984) STANDARD full automatic COMMENT SWISS-PROT; P03588; V1A$BMV. Data kindly reviewed (07-MAR-1986) by P. Ahlquist From EMBL entry BRBMV1; dated 06-JUL-1989. FEATURES Location/Qualifiers misc_feature 1..42 /note="region of 96% homology to BMV RNA2" misc_RNA 1..1 /note="pot. cap site" CDS 75..2957 /note="RNA1 translation product aa 1-961" /codon_start=75 misc_feature 3042..3234 /note="193 bp region of common secondary structure of all BMV RNAs" BASE COUNT 827 a 680 c 848 g 879 t ORIGIN 1 gtagaccacg gaacgaggtt caatcccttg tcgaccacgg ttctgctact tgttctttgt 61 ttttcaccaa caaaatgtca agttctatcg atttgctgaa gttgattgct gagaagggtg 121 ctgacagcca gagtgcccaa gacatcgtag acaatcaggt tgcgcaacag ttatctgcgc 181 agattgaata cgcgaaaagg tctaagaaaa tcaacgttcg caataagctc tctattgagg 241 aggctgacgc cttccgtgac cgttatggtg gtgcctttga cttaaatttg actcagcagt 301 atcatgcgcc ccatagcctg gctggtgctc tgcgtgtagc ggagcattat gactgtctcg 361 acagttttcc ccctgaagac cccgttatag atttcggagg gtcttggtgg catcactttt 421 caagaaggga taaaagggtg cacagttgtt gtcctgtgtt gggtgttaga gacgctgccc 481 gacatgagga gaggatgtgc cgcatgcgaa aaattttgca agaaagcgat gatttcgatg 541 aagtcccgaa cttttgtctt aaccgagctc aagattgtga tgtccaagct gattgggcta 601 tctgtatcca cggcggttat gatatgggct tccaaggtct gtgtgacgcc atgcattcgc 661 atggagtacg cgtactacgt ggtaccgtta tgttcgacgg cgccatgttg tttgaccgcg 721 agggttttct tcccttgctt aaatgtcact ggcaacgtga cgggtcaggc gcggatgagg 781 tgatcaaatt cgattttgaa aatgaaagca cattatctta catccacgga tggcaagatt 841 tgggctcatt tttcaccgag tcggtgcatt gcatcgatgg aaccacctat ctgttggagc 901 gcgaaatgct gaaatgtaac atcatgacct ataagatcat cgctacaaat ttacgctgcc 961 cccgggagac actacgtcac tgtgtatggt ttgaagacat atctaagtac gtaggggtct 1021 caatacctga agactggagt ctcaatcgct ggaaatgtgt gcgcgtcgcc aaaaccacag 1081 tgagagaggt agaggagata gctttcagat gtttcaagga aagtaaagaa tggactgaga 1141 acatgaaagc tgtcgcatct atcttatccg ccaagtcgtc gactgttatt attaacggtc 1201 aggctatcat ggctggtgag cgcttagaca ttgaagatta tcatctagtg gcctttgctt 1261 tgactttgaa tctgtatcaa aagtacgaaa agcttacggc cctccgcgat gggatggaat 1321 ggaaaggttg gtgccatcac ttcaaaacta ggttttggtg gggtggagat tcatccaggg 1381 cgaaagtagg atggctgaga acattggcta gcagatttcc cctactacgt ctggattctt 1441 atgcggacag ttttaagttt ctgactcgtc tctcaaacgt tgaagaattt gagcaagatt 1501 ctgtaccgat atcacgtttg agaacgtttt ggactgaaga ggacttattc gaccggctgg 1561 agcatgaagt gcagacagcc aagaccaagc gctcgaagaa gaaggcgaaa gtcccgccag 1621 ctgctgagat acctcaggag gagtttcatg atgcccctga gagttcgagc cctgagtccg 1681 tcagtgatga cgttaaaccg gtgactgatg tggtcccgga tgccgaggtg tctgttgagg 1741 taccaacgga ccctcgtggc atatctagac acggagccat gaaggaattt gtgcgttatt 1801 gtaagagatt acataacaac tccgagtcta atcttcgtca cctatgggac atttccggcg 1861 gtcgcggaag tgagatcgca aataagagca tctttgagac ctaccatcgc atagacgata 1921 tggtgaatgt ccatttggcc aacggtaact ggttgtatcc taaaaaatac gattacactg 1981 ttggatataa tgagcatggt ttaggtccga agcacgcaga tgaaacgtac attgttgata 2041 aaacatgtgc atgctctaac ttgagggaca ttgcagaagc tagcgccaaa gtttctgtcc 2101 ctacatgcga tatttccatg gttgatggag ttgcgggatg cggtaaaacc actgccataa 2161 aagatgcatt ccgtatggga gaggacctaa ttgtgacggc gaatcgtaaa tcggccgagg 2221 acgtcaggat ggctttattc cctgacactt ataattccaa ggtagctttg gacgttgtgc 2281 gcaccgcgga ttctgcgatc atgcacggtg taccgtcctg tcataggctg cttgttgatg 2341 aggctggttt actacattat ggtcaactcc tggtggtggc tgctctgtct aaatgttcac 2401 aagttcttgc ctttggggac acagagcaga tttcgttcaa gtctcgtgac gcgggtttta 2461 aattgctcca cggtaatctg caatatgatc gccgtgacgt tgttcacaag acttaccggt 2521 gtccgcaaga tgttatcgct gctgttaatc tgctgaagcg taaatgcggt aatagggaca 2581 cgaagtatca atcctggaca tctgagtcca aagtttctag aagtctcacg aagcgtcgta 2641 ttacttctgg tttgcaggtc actattgatc cgaacagaac gtatcttacg atgactcaag 2701 ctgataaagc ggcccttcaa acgagggcta aggattttcc cgtgagcaag gactggattg 2761 atggacacat aaaaacagta cacgaagcgc aagggatctc tgttgacaac gtcactttgg 2821 ttcggcttaa gtcgaccaaa tgtgatttgt ttaaacatga ggagtactgt ttggttgcct 2881 taacacgaca caagaagtcc tttgagtatt gctttaacgg cgagctcgct ggtgatttga 2941 tctttaattg tgttaagtga tgcgcttgtc tctgtgtgag acctctgctc gaggagagcc 3001 ctgttccagg taggaacgtt gtggtctaac tcaagactag ctgaatcggt gctataaccg 3061 atagtcgtgg ttgacacgca gacctcttac aagagtgtct aggcgccttt gagagttact 3121 ctttgctctc ttcggaagaa cccttagggg ttcgtgcatg ggcttgcata gcaagtctta 3181 gaatgcgggt gtcgtacagt gttgaaaaac actgtaaatc tctaaaagag acca //