Path: utzoo!utgpu!news-server.csri.toronto.edu!bonnie.concordia.ca!uunet!stanford.edu!agate!bionet!will From: GenBank-Updates@genbank.bio.net Newsgroups: bionet.molbio.genbank.updates Subject: Brome mosaic virus (BMV) RNA2 Message-ID: Date: 28 May 91 18:40:16 GMT Sender: will@genbank.bio.net Distribution: bionet Lines: 85 Approved: lear@genbank.bio.net Checksum: 07518 6 LOCUS MBRBMV2 2865 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Brome mosaic virus (BMV) RNA2 ACCESSION X01678 KEYWORDS . SOURCE Brome mosaic virus RNA. ORGANISM Brome mosaic virus Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses; Bromovirus. REFERENCE 1 (bases 1 to 2865) AUTHORS Ahlquist,P., Dasgupta,R. and Kaesberg,P. TITLE Nucleotide sequence of the brome mosaic virus genome and its implications for viral replication JOURNAL J. Mol. Biol. 172, 369-383 (1984) STANDARD full automatic COMMENT SWISS-PROT; P03594; V2A$BMV. Data kindly reviewed (07-MAR-1986) by P. Ahlquist From EMBL entry BRBMV2; dated 06-JUL-1989. FEATURES Location/Qualifiers misc_feature 1..42 /note="region of 96% homology to BMV RNA1" misc_RNA 1..1 /note="pot. cap site" CDS 104..2569 /note="pot. BMV RNA2 translation product (aa 1-822)" /codon_start=104 repeat_region 2606..2640 /note="imperfect direct repeat 1" repeat_region 2642..2680 /note="imperfect direct repeat 1'" misc_feature 2763..2865 /note="193 bp region of common secondary structure of all BMV RNAs" BASE COUNT 774 a 603 c 678 g 810 t ORIGIN 1 gtaaaccacg gaacgaggtt caatcccttg tcgacccacg gtttgcgcaa cacacatctg 61 accttgttgt tgttgtgtgc ttgttctttc tactatcacc aagatgtctt cgaaaacctg 121 ggatgatgat ttcgttcgcc aggtcccgtc tttccaatgg atcatagatc aatccttaga 181 agacgaggtg gaggctgcta gccttcaggt gcaggagccg gcagacggag ttgccattga 241 cggatctctc gcgagtttta aattagctat agcgcccttg gagataggag gggtattcga 301 tccccctttt gaccgagtgc gctggggctc tatttgcgac accgtccaac aaatggttca 361 acagttcacc gatagaccgc tgattcctca agctgaaatg gcacggatgt tatatcttga 421 cattccgggc tctttcgtgc tcgaagatga aattgatgac tggtatcccg aggatactag 481 tgatggttac ggtgtatcgt ttgccgccga tgaagatcat gcgagcgatc taaaactcgc 541 cagtgattcc tcgaactgtg aaattgagga agttcgtgtt actggagata cccccaagga 601 gctgaccctt ggagataggt acatgggcat tgatgaagag tttcagacta ctaatactga 661 ttacgacatc actcttcaaa tcatgaaccc tattgaacat agggtttcgc gtgttattga 721 tacacactgc catccagata accctgacat ctctactggg ccaatttata tggagagagt 781 cagccttgct agaacagaag cgaccagtca ttccatactg ccaacccatg cttatttcga 841 tgattcgtac catcaagccc ttgttgaaaa tggtgattat tccatggact ttgataggat 901 cagacttaag caaagtgatg tagactggta tagggacccc gataaatatt ttcaaccaaa 961 aatgaatatc gggagtgctc agcgaagagt tggtactcag aaagaagtct taaccgcact 1021 caaaaagcga aacgcggacg ttccagaaat gggagacgcg attaacatga aggacactgc 1081 gaaagctata gcaaagcgct ttcgtagcac attccttaat gttgacggtg aagactgtct 1141 gagagcttct atggatgtca tgactaaatg tcttgagtac cataagaagt ggggtaagca 1201 catggacttg caaggtgtga atgtggcagc agagactgat ttatgtcggt accagcatat 1261 gctgaagtct gacgtaaaac ctgttgtaac tgacaccctt cacttggaac gagcagtagc 1321 agctactata acatttcata gtaaaggtgt gactagtaat ttttcaccct ttttcactgc 1381 ttgtttcgag aagttatcac tggccctgaa atccaggttc attgtgccta tcggaaagat 1441 atcctctctg gagcttaaga atgtccgctt gaataacaga tactttcttg aagcggacct 1501 aagcaaattt gataaatctc agggtgagct gcacctagag tttcagagag agatactcct 1561 tgcgctgggc tttccagcgc cgctgacgaa ttggtggtct gattttcatc gcgattctta 1621 tttatcagac cctcatgcca aggtgggaat gtccgtttcc ttccaacgca gaactggtga 1681 cgcgtttaca tatttcggta atactcttgt cactatggct atgattgcat atgcctctga 1741 tctaagtgac tgtgactgtg caatattttc aggagatgat tctttaatca tctctaaagt 1801 taagccagtc ctggataccg atatgtttac gtctctcttc aatatggaga taaaagtcat 1861 ggaccctagt gtgccctacg tttgtagtaa gtttctcgtc gaaactgaaa tgggcaattt 1921 ggtgtctgta ccagatcctc tgagagagat ccagcgctta gctaagcgaa agattctgcg 1981 tgatgaacag atgctcagag cacatttcgt ttccttctgt gatcgaatga agtttattaa 2041 tcaacttgat gagaagatga ttacgacgct ctgtcatttt gtttatctga aatatgggaa 2101 agaaaaacct tggattttcg aggaggttag agctgctctt gcggcttttt ctttatactc 2161 cgagaatttc ctgaggttct ctgattgcta ctgtaccgaa ggcatcagag tttatcagat 2221 gagcgatcct gtatgtaagt tcaaacgcac cacggaagag cgtaaaactg atggtgactg 2281 gtttcacaac tggaagaatc caaagtttcc tggtgtgtta gacaaagtct acagaaccat 2341 tggaatttat tcctcggact gtagtactaa ggagctccct gtcaaacgga tcggacgttt 2401 acatgaggcc cttgagcgtg agtcactcaa attagctaat gatcgtagga ccacacaacg 2461 cttgaaaaag aaggtcgacg attacgctac cggtagagga ggcctaacgt cagttgatgc 2521 tttgctcgtg aagtcccatt gtgagacttt taagccctct gatctgagat gatcggttct 2581 atgatatatg aacctaagct gtgaacagcc ctttggttaa ggttaaaaac tcctggtcag 2641 gcagaccact ttggctaagt ttaaaagctt gttgaatcag tacaataact gatagtcgtg 2701 gttgacacgc agacctctta caagagtgtc taggtgcctt tgagagttac tctttgctct 2761 cttcggaaga acccttaggg gttcgtgcat gggcttgcat agcaagtctt agaatgcggg 2821 tgccgtacag tgttgaaaaa cactgtaaat ctctaaaaga gacca //