Xref: utzoo bionet.software:1064 sci.chem:4058 Path: utzoo!utgpu!news-server.csri.toronto.edu!cs.utexas.edu!swrinde!zaphod.mps.ohio-state.edu!think.com!yale!quasi-eli!cs.yale.edu!rtnmr.chem.yale.edu!rescorla From: rescorla@rtnmr.chem.yale.edu (Eric Rescorla) Newsgroups: bionet.software,sci.chem Subject: PDB modification programs Message-ID: <1991Jun6.132122.7973@cs.yale.edu> Date: 6 Jun 91 13:21:22 GMT Sender: news@cs.yale.edu (Usenet News) Organization: The Temples of Syrinx Lines: 14 Originator: rescorla@rtnmr.chem.yale.edu Nntp-Posting-Host: rtnmr.chem.yale.edu Essentially, what I need here is software to mutate a protein according to some sort of data file, replacing amino acids one for one, preferably with specified torsion angles. I want to retain the PDB structure for the backbone, but use torsion angles from the literature to predict the side chain--all this is so that we can use the end result for an MD calculation, the whole thing is comparison modelling... Preferably, this should run in batch mode, so I don't have to sit there and watch it. -Ekr -- ------------------------------------------------------------------------------- Eric Rescorla rescorla@rtnmr.chem.yale.edu Yale University Department of Chemistry rescorla@psun.chem.yale.edu "No his mind is not for rent--to any God or government." Peart/Dubois